Wall clock time and date at job start Tue Mar 31 2020 17:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.88604 * 2 1 4 4 C 1.55153 * 111.00453 * 123.92149 * 2 1 3 5 5 C 1.54327 * 102.94652 * 153.57492 * 4 2 1 6 6 H 1.09000 * 109.88349 * 218.38998 * 5 4 2 7 7 C 1.53001 * 110.00587 * 97.29692 * 5 4 2 8 8 N 1.47024 * 107.26870 * 337.81049 * 5 4 2 9 9 C 1.34773 * 125.64790 * 178.97321 * 8 5 4 10 10 O 1.21356 * 119.99824 * 359.97438 * 9 8 5 11 11 C 1.49350 * 120.00038 * 179.97438 * 9 8 5 12 12 O 1.21380 * 120.00208 * 0.02562 * 11 9 8 13 13 N 1.34773 * 120.00038 * 180.02562 * 11 9 8 14 14 C 1.39730 * 119.99850 * 174.78336 * 13 11 9 15 15 C 1.39027 * 120.03854 * 146.02479 * 14 13 11 16 16 C 1.38141 * 120.05719 * 179.74144 * 15 14 13 17 17 C 1.38183 * 120.14494 * 0.56107 * 16 15 14 18 18 C 1.38913 * 120.08140 * 359.69180 * 17 16 15 19 19 O 1.35752 * 120.03309 * 180.02562 * 18 17 16 20 20 C 1.34835 * 116.99927 * 5.92257 * 19 18 17 21 21 H 1.08005 * 119.99575 * 5.41234 * 20 19 18 22 22 C 1.38648 * 120.00586 * 185.40462 * 20 19 18 23 23 N 1.31565 * 119.99450 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00512 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46631 * 59.99757 * 24 22 20 26 26 H 1.48494 * 109.47139 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46720 * 300.00078 * 24 22 20 28 28 C 1.38759 * 119.94361 * 0.02741 * 18 17 16 29 29 C 1.47426 * 108.70330 * 358.93604 * 8 5 4 30 30 H 1.09002 * 109.46896 * 182.42632 * 1 2 3 31 31 H 1.08995 * 109.47478 * 302.42798 * 1 2 3 32 32 H 1.09007 * 109.46790 * 62.42746 * 1 2 3 33 33 H 1.09004 * 110.72511 * 271.94306 * 4 2 1 34 34 H 1.09004 * 110.72082 * 35.21108 * 4 2 1 35 35 H 1.09000 * 109.47189 * 300.65930 * 7 5 4 36 36 H 1.08995 * 109.47405 * 60.66811 * 7 5 4 37 37 H 1.09006 * 109.46792 * 180.66210 * 7 5 4 38 38 H 0.96995 * 120.00265 * 354.77933 * 13 11 9 39 39 H 1.08000 * 119.97184 * 0.02562 * 15 14 13 40 40 H 1.08001 * 119.92937 * 180.27806 * 16 15 14 41 41 H 1.07997 * 119.95992 * 179.72341 * 17 16 15 42 42 H 0.96999 * 119.99679 * 180.02562 * 23 22 20 43 43 H 1.07994 * 120.07604 * 179.97438 * 28 18 17 44 44 H 1.08998 * 110.37120 * 265.29457 * 29 8 5 45 45 H 1.09004 * 110.46190 * 143.01088 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0861 -0.8083 1.2019 5 6 3.4675 -1.2744 0.6956 6 1 3.6650 -2.2898 1.0393 7 6 4.5580 -0.3308 1.2067 8 7 3.4272 -1.2428 -0.7737 9 6 4.4477 -1.5610 -1.5945 10 8 5.5135 -1.9096 -1.1305 11 6 4.2670 -1.4847 -3.0750 12 8 3.2011 -1.1355 -3.5392 13 7 5.2873 -1.8034 -3.8958 14 6 5.0873 -1.8376 -5.2783 15 6 6.1129 -1.4636 -6.1393 16 6 5.9173 -1.5024 -7.5063 17 6 4.6991 -1.9016 -8.0219 18 6 3.6686 -2.2715 -7.1670 19 8 2.4723 -2.6640 -7.6746 20 6 2.3878 -2.7906 -9.0144 21 1 3.2702 -2.6680 -9.6251 22 6 1.1683 -3.0783 -9.6081 23 7 0.0935 -3.2272 -8.8641 24 14 1.0514 -3.2543 -11.4641 25 1 1.9383 -4.3574 -11.9134 26 1 -0.3508 -3.5608 -11.8449 27 1 1.4740 -1.9853 -12.1092 28 6 3.8630 -2.2394 -5.7934 29 6 2.0853 -0.8063 -1.2006 30 1 -0.3633 -1.0268 0.0435 31 1 -0.3634 0.5510 0.8674 32 1 -0.3633 0.4757 -0.9110 33 1 2.1921 -0.1707 2.0796 34 1 1.4467 -1.6637 1.4204 35 1 4.3584 0.6807 0.8529 36 1 4.5649 -0.3399 2.2966 37 1 5.5279 -0.6611 0.8346 38 1 6.1605 -2.0089 -3.5269 39 1 7.0647 -1.1469 -5.7392 40 1 6.7169 -1.2157 -8.1733 41 1 4.5480 -1.9265 -9.0910 42 1 -0.7596 -3.4288 -9.2794 43 1 3.0633 -2.5262 -5.1268 44 1 1.4519 -1.6699 -1.4030 45 1 2.1542 -0.1717 -2.0842 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741098866.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:35 Heat of formation + Delta-G solvation = -60.794968 kcal Electronic energy + Delta-G solvation = -28214.166175 eV Core-core repulsion = 24197.813563 eV Total energy + Delta-G solvation = -4016.352612 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.08940 -39.71176 -38.60055 -37.83431 -36.61051 -34.27264 -33.15094 -32.27171 -31.99659 -29.65043 -28.65895 -27.31223 -26.15694 -25.44385 -24.87612 -22.57689 -21.69424 -21.03222 -20.50908 -19.51398 -18.36296 -17.81861 -17.05259 -16.83549 -16.38282 -15.79404 -15.44237 -15.11987 -14.77585 -14.57012 -14.25265 -14.02244 -13.87990 -13.76213 -13.59818 -13.53912 -13.01864 -12.88109 -12.76536 -12.58574 -12.51092 -12.24027 -11.91710 -11.79184 -11.60403 -11.55677 -11.13716 -10.99580 -10.95748 -10.94087 -10.79534 -10.77253 -10.49181 -9.87982 -9.57713 -9.20971 -8.94929 -8.83239 -7.77499 -7.23290 -6.44340 -4.03680 1.27817 2.09238 2.26884 2.32659 3.13542 3.14082 3.17558 3.25707 3.42444 3.96191 4.15426 4.21924 4.42859 4.52312 4.56815 4.78347 5.03816 5.06509 5.10712 5.15002 5.27053 5.33518 5.40595 5.48508 5.53142 5.58700 5.63177 5.68517 5.77811 5.81038 5.90083 5.93967 6.03323 6.05658 6.11546 6.16617 6.29914 6.55363 6.72564 6.95727 7.02434 7.07517 7.30180 7.38119 7.42183 7.67375 7.76178 7.99857 8.09316 9.00445 9.70500 10.73354 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014717 B = 0.002839 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.085351 B = 9859.974903 C =11484.340002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 H 0.085 0.915 4 C -0.125 4.125 5 C 0.132 3.868 6 H 0.080 0.920 7 C -0.164 4.164 8 N -0.586 5.586 9 C 0.526 3.474 10 O -0.523 6.523 11 C 0.501 3.499 12 O -0.486 6.486 13 N -0.638 5.638 14 C 0.172 3.828 15 C -0.230 4.230 16 C -0.057 4.057 17 C -0.241 4.241 18 C 0.168 3.832 19 O -0.172 6.172 20 C -0.392 4.392 21 H 0.092 0.908 22 C 0.040 3.960 23 N -0.860 5.860 24 Si 0.941 3.059 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.186 4.186 29 C 0.096 3.904 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.417 0.583 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.129 0.871 42 H 0.271 0.729 43 H 0.129 0.871 44 H 0.077 0.923 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.572 5.748 18.008 19.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 H 0.103 0.897 4 C -0.163 4.163 5 C 0.029 3.971 6 H 0.098 0.902 7 C -0.222 4.222 8 N -0.320 5.320 9 C 0.309 3.691 10 O -0.400 6.400 11 C 0.282 3.718 12 O -0.359 6.359 13 N -0.284 5.284 14 C 0.079 3.921 15 C -0.251 4.251 16 C -0.076 4.076 17 C -0.261 4.261 18 C 0.113 3.887 19 O -0.075 6.075 20 C -0.469 4.469 21 H 0.110 0.890 22 C -0.165 4.165 23 N -0.495 5.495 24 Si 0.766 3.234 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.207 4.207 29 C -0.026 4.026 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.254 0.746 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.147 0.853 42 H 0.081 0.919 43 H 0.147 0.853 44 H 0.096 0.904 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.932 5.656 17.989 19.491 hybrid contribution 0.421 -0.172 -0.787 0.909 sum 5.354 5.484 17.202 18.832 Atomic orbital electron populations 1.21694 0.93357 1.02464 1.02401 1.22416 0.96593 0.99398 0.94215 0.89697 1.22832 0.94623 1.00526 0.98310 1.21694 0.96270 1.00262 0.78833 0.90237 1.22159 0.99669 0.99334 1.01043 1.48327 1.12734 1.64411 1.06577 1.19744 0.83484 0.78701 0.87126 1.90732 1.25529 1.46521 1.77203 1.20042 0.85029 0.79311 0.87370 1.90818 1.25439 1.42876 1.76724 1.43026 1.13847 1.66512 1.05054 1.17158 0.95130 0.99419 0.80390 1.20298 0.98963 1.12593 0.93230 1.20524 0.96222 0.96980 0.93876 1.21215 0.94251 1.09983 1.00631 1.19075 0.86738 0.91195 0.91721 1.84004 1.26138 1.72982 1.24398 1.21295 0.96226 1.50185 0.79153 0.89031 1.25302 0.94145 0.96561 1.00472 1.70044 0.99580 1.43932 1.35900 0.85778 0.77919 0.79151 0.80562 1.19477 1.20280 1.19470 1.19989 0.97703 1.09737 0.93251 1.22842 0.81652 0.99639 0.98454 0.92146 0.92175 0.91782 0.89704 0.90201 0.92344 0.91477 0.90936 0.74580 0.87085 0.86812 0.85300 0.91937 0.85335 0.90429 0.87750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.29 37.16 0.35 -0.67 16 2 C -0.11 -0.87 3.64 -88.47 -0.32 -1.20 16 3 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.13 -0.88 5.97 -24.90 -0.15 -1.03 16 5 C 0.13 1.25 3.49 -66.95 -0.23 1.02 16 6 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 7 C -0.16 -1.45 9.07 37.16 0.34 -1.11 16 8 N -0.59 -7.19 3.08 -163.55 -0.50 -7.69 16 9 C 0.53 7.65 7.69 -11.63 -0.09 7.56 16 10 O -0.52 -8.06 15.37 5.49 0.08 -7.97 16 11 C 0.50 8.25 7.59 -11.63 -0.09 8.16 16 12 O -0.49 -9.19 11.48 5.47 0.06 -9.13 16 13 N -0.64 -10.17 5.32 -10.31 -0.05 -10.22 16 14 C 0.17 3.25 6.27 -83.77 -0.53 2.72 16 15 C -0.23 -3.97 9.96 -39.32 -0.39 -4.36 16 16 C -0.06 -1.03 10.03 -39.64 -0.40 -1.43 16 17 C -0.24 -5.23 9.13 -39.35 -0.36 -5.59 16 18 C 0.17 4.15 6.64 -39.14 -0.26 3.89 16 19 O -0.17 -5.00 9.76 0.03 0.00 -5.00 16 20 C -0.39 -11.00 9.44 30.88 0.29 -10.71 16 21 H 0.09 2.35 5.29 -52.48 -0.28 2.07 16 22 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 23 N -0.86 -25.37 13.67 55.48 0.76 -24.61 16 24 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 28 C -0.19 -4.19 8.60 -39.19 -0.34 -4.53 16 29 C 0.10 1.10 5.53 -2.53 -0.01 1.08 16 30 H 0.06 0.43 8.11 -51.93 -0.42 0.01 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.46 7.83 -51.93 -0.41 0.06 16 34 H 0.08 0.51 8.01 -51.93 -0.42 0.10 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.80 6.73 -51.93 -0.35 0.45 16 38 H 0.42 5.53 8.30 -40.82 -0.34 5.19 16 39 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 40 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.13 2.76 5.71 -52.49 -0.30 2.46 16 42 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.13 3.05 6.44 -52.49 -0.34 2.71 16 44 H 0.08 0.91 8.04 -51.93 -0.42 0.50 16 45 H 0.10 1.40 6.16 -51.93 -0.32 1.08 16 LS Contribution 371.28 15.07 5.60 5.60 Total: -1.00 -32.62 371.28 -7.47 -40.09 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.10 Total: 8.68 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -2.29 Total: -5.19 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.20 Total: -42.53 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: 0.15 Total: -22.10 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.62 -7.47 -40.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741098866.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.701 kcal (2) G-P(sol) polarization free energy of solvation -32.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds