Wall clock time and date at job start Tue Mar 31 2020 17:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.88604 * 2 1 4 4 C 1.55153 * 111.00453 * 123.92149 * 2 1 3 5 5 C 1.54327 * 102.94652 * 153.57492 * 4 2 1 6 6 H 1.09000 * 109.88349 * 218.38998 * 5 4 2 7 7 C 1.53001 * 110.00587 * 97.29692 * 5 4 2 8 8 N 1.47024 * 107.26870 * 337.81049 * 5 4 2 9 9 C 1.34773 * 125.64790 * 178.97321 * 8 5 4 10 10 O 1.21356 * 119.99824 * 359.97438 * 9 8 5 11 11 C 1.49350 * 120.00038 * 179.97438 * 9 8 5 12 12 O 1.21380 * 120.00208 * 0.02562 * 11 9 8 13 13 N 1.34773 * 120.00038 * 180.02562 * 11 9 8 14 14 C 1.39730 * 119.99850 * 174.78336 * 13 11 9 15 15 C 1.39027 * 120.03854 * 146.02479 * 14 13 11 16 16 C 1.38141 * 120.05719 * 179.74144 * 15 14 13 17 17 C 1.38183 * 120.14494 * 0.56107 * 16 15 14 18 18 C 1.38913 * 120.08140 * 359.69180 * 17 16 15 19 19 O 1.35752 * 120.03309 * 180.02562 * 18 17 16 20 20 C 1.34835 * 116.99927 * 5.92257 * 19 18 17 21 21 H 1.08005 * 119.99575 * 5.41234 * 20 19 18 22 22 C 1.38648 * 120.00586 * 185.40462 * 20 19 18 23 23 N 1.31565 * 119.99450 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00512 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46631 * 59.99757 * 24 22 20 26 26 H 1.48494 * 109.47139 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46720 * 300.00078 * 24 22 20 28 28 C 1.38759 * 119.94361 * 0.02741 * 18 17 16 29 29 C 1.47426 * 108.70330 * 358.93604 * 8 5 4 30 30 H 1.09002 * 109.46896 * 182.42632 * 1 2 3 31 31 H 1.08995 * 109.47478 * 302.42798 * 1 2 3 32 32 H 1.09007 * 109.46790 * 62.42746 * 1 2 3 33 33 H 1.09004 * 110.72511 * 271.94306 * 4 2 1 34 34 H 1.09004 * 110.72082 * 35.21108 * 4 2 1 35 35 H 1.09000 * 109.47189 * 300.65930 * 7 5 4 36 36 H 1.08995 * 109.47405 * 60.66811 * 7 5 4 37 37 H 1.09006 * 109.46792 * 180.66210 * 7 5 4 38 38 H 0.96995 * 120.00265 * 354.77933 * 13 11 9 39 39 H 1.08000 * 119.97184 * 0.02562 * 15 14 13 40 40 H 1.08001 * 119.92937 * 180.27806 * 16 15 14 41 41 H 1.07997 * 119.95992 * 179.72341 * 17 16 15 42 42 H 0.96999 * 119.99679 * 180.02562 * 23 22 20 43 43 H 1.07994 * 120.07604 * 179.97438 * 28 18 17 44 44 H 1.08998 * 110.37120 * 265.29457 * 29 8 5 45 45 H 1.09004 * 110.46190 * 143.01088 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0861 -0.8083 1.2019 5 6 3.4675 -1.2744 0.6956 6 1 3.6650 -2.2898 1.0393 7 6 4.5580 -0.3308 1.2067 8 7 3.4272 -1.2428 -0.7737 9 6 4.4477 -1.5610 -1.5945 10 8 5.5135 -1.9096 -1.1305 11 6 4.2670 -1.4847 -3.0750 12 8 3.2011 -1.1355 -3.5392 13 7 5.2873 -1.8034 -3.8958 14 6 5.0873 -1.8376 -5.2783 15 6 6.1129 -1.4636 -6.1393 16 6 5.9173 -1.5024 -7.5063 17 6 4.6991 -1.9016 -8.0219 18 6 3.6686 -2.2715 -7.1670 19 8 2.4723 -2.6640 -7.6746 20 6 2.3878 -2.7906 -9.0144 21 1 3.2702 -2.6680 -9.6251 22 6 1.1683 -3.0783 -9.6081 23 7 0.0935 -3.2272 -8.8641 24 14 1.0514 -3.2543 -11.4641 25 1 1.9383 -4.3574 -11.9134 26 1 -0.3508 -3.5608 -11.8449 27 1 1.4740 -1.9853 -12.1092 28 6 3.8630 -2.2394 -5.7934 29 6 2.0853 -0.8063 -1.2006 30 1 -0.3633 -1.0268 0.0435 31 1 -0.3634 0.5510 0.8674 32 1 -0.3633 0.4757 -0.9110 33 1 2.1921 -0.1707 2.0796 34 1 1.4467 -1.6637 1.4204 35 1 4.3584 0.6807 0.8529 36 1 4.5649 -0.3399 2.2966 37 1 5.5279 -0.6611 0.8346 38 1 6.1605 -2.0089 -3.5269 39 1 7.0647 -1.1469 -5.7392 40 1 6.7169 -1.2157 -8.1733 41 1 4.5480 -1.9265 -9.0910 42 1 -0.7596 -3.4288 -9.2794 43 1 3.0633 -2.5262 -5.1268 44 1 1.4519 -1.6699 -1.4030 45 1 2.1542 -0.1717 -2.0842 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741098866.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:34 Heat of formation + Delta-G solvation = -82.575391 kcal Electronic energy + Delta-G solvation = -28215.110645 eV Core-core repulsion = 24197.813563 eV Total energy + Delta-G solvation = -4017.297082 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.32464 -41.05806 -40.16032 -38.94134 -38.29414 -35.75771 -34.27580 -33.98459 -32.85684 -31.31963 -30.28513 -28.05723 -27.40852 -27.00028 -26.12544 -23.94966 -23.19788 -22.30917 -21.46342 -20.63291 -20.02563 -19.28095 -18.69962 -18.01524 -17.43733 -17.05815 -16.88306 -16.79117 -16.09284 -16.04523 -15.80980 -15.51469 -15.26645 -14.89477 -14.79470 -14.41506 -14.34258 -14.27610 -13.87098 -13.61787 -13.54953 -13.27846 -13.23790 -13.09445 -12.92367 -12.65991 -12.60990 -12.52060 -12.38736 -12.16094 -11.79471 -11.62296 -11.48490 -11.44863 -11.30835 -10.77150 -10.60627 -9.97382 -9.42718 -8.95280 -8.46793 -6.16376 -0.08074 0.59371 0.67909 1.06005 1.35654 1.47074 1.52635 1.95636 2.16003 2.28299 2.79769 3.03557 3.15262 3.44114 3.51566 3.59497 3.87402 4.05935 4.08336 4.26812 4.32124 4.34071 4.36276 4.46629 4.53441 4.62694 4.66469 4.74899 4.78733 4.85167 4.88754 4.93397 5.00518 5.07887 5.09570 5.17439 5.23051 5.28726 5.32679 5.35045 5.43574 5.58927 5.69260 5.90449 6.01429 6.07019 6.12469 6.53926 6.77988 6.96852 7.77315 8.76502 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014717 B = 0.002839 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.085351 B = 9859.974903 C =11484.340002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 H 0.091 0.909 4 C -0.113 4.113 5 C 0.122 3.878 6 H 0.080 0.920 7 C -0.158 4.158 8 N -0.582 5.582 9 C 0.528 3.472 10 O -0.533 6.533 11 C 0.497 3.503 12 O -0.516 6.516 13 N -0.628 5.628 14 C 0.177 3.823 15 C -0.201 4.201 16 C -0.045 4.045 17 C -0.249 4.249 18 C 0.130 3.870 19 O -0.231 6.231 20 C -0.415 4.415 21 H 0.107 0.893 22 C -0.024 4.024 23 N -0.922 5.922 24 Si 1.022 2.978 25 H -0.255 1.255 26 H -0.273 1.273 27 H -0.255 1.255 28 C -0.207 4.207 29 C 0.091 3.909 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.048 0.952 38 H 0.433 0.567 39 H 0.162 0.838 40 H 0.163 0.837 41 H 0.127 0.873 42 H 0.273 0.727 43 H 0.101 0.899 44 H 0.068 0.932 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.267 6.988 19.111 21.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.117 4.117 3 H 0.109 0.891 4 C -0.151 4.151 5 C 0.021 3.979 6 H 0.098 0.902 7 C -0.216 4.216 8 N -0.315 5.315 9 C 0.310 3.690 10 O -0.411 6.411 11 C 0.280 3.720 12 O -0.390 6.390 13 N -0.276 5.276 14 C 0.084 3.916 15 C -0.221 4.221 16 C -0.064 4.064 17 C -0.268 4.268 18 C 0.079 3.921 19 O -0.138 6.138 20 C -0.491 4.491 21 H 0.124 0.876 22 C -0.222 4.222 23 N -0.560 5.560 24 Si 0.840 3.160 25 H -0.180 1.180 26 H -0.198 1.198 27 H -0.179 1.179 28 C -0.229 4.229 29 C -0.031 4.031 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.131 0.869 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.068 0.932 38 H 0.273 0.727 39 H 0.179 0.821 40 H 0.181 0.819 41 H 0.145 0.855 42 H 0.082 0.918 43 H 0.119 0.881 44 H 0.086 0.914 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.693 6.913 19.157 21.771 hybrid contribution -0.178 -0.471 -0.880 1.014 sum 7.515 6.442 18.277 20.785 Atomic orbital electron populations 1.21691 0.92493 1.02702 1.02815 1.22385 0.97149 0.99206 0.92952 0.89110 1.22853 0.92784 1.01061 0.98353 1.22031 0.98308 1.00832 0.76747 0.90184 1.22116 0.97927 0.98808 1.02725 1.48491 1.12258 1.62814 1.07919 1.19309 0.84070 0.79418 0.86173 1.90725 1.25891 1.47529 1.76947 1.20577 0.84492 0.78400 0.88568 1.90829 1.26639 1.44021 1.77538 1.42961 1.14630 1.66141 1.03893 1.17287 0.94154 0.98112 0.82088 1.20903 0.99853 1.08656 0.92691 1.21048 0.95630 0.94694 0.95006 1.21388 0.94999 1.10144 1.00296 1.19576 0.86761 0.92790 0.92961 1.83967 1.28676 1.76057 1.25066 1.21859 0.97246 1.50544 0.79403 0.87587 1.26675 0.93343 0.95853 1.06307 1.70211 1.00414 1.46864 1.38518 0.84612 0.78244 0.79943 0.73175 1.17953 1.19799 1.17907 1.19992 0.98939 1.11514 0.92441 1.22881 0.81448 0.99385 0.99432 0.92193 0.90023 0.92940 0.86905 0.89231 0.92305 0.88669 0.93240 0.72667 0.82093 0.81945 0.85485 0.91844 0.88050 0.91391 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.29 71.98 0.67 -1.18 16 2 C -0.10 -1.47 3.64 -9.40 -0.03 -1.51 16 3 H 0.09 1.29 8.14 -2.39 -0.02 1.28 16 4 C -0.11 -1.29 5.97 31.78 0.19 -1.10 16 5 C 0.12 2.12 3.49 45.34 0.16 2.27 16 6 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 7 C -0.16 -2.45 9.07 71.98 0.65 -1.80 16 8 N -0.58 -14.21 3.08 -789.71 -2.43 -16.64 16 9 C 0.53 15.40 7.69 87.24 0.67 16.07 16 10 O -0.53 -16.05 15.37 -3.27 -0.05 -16.10 16 11 C 0.50 16.76 7.59 87.24 0.66 17.42 16 12 O -0.52 -20.76 11.48 -3.34 -0.04 -20.80 16 13 N -0.63 -19.53 5.32 -304.88 -1.62 -21.15 16 14 C 0.18 6.56 6.27 38.20 0.24 6.80 16 15 C -0.20 -6.14 9.96 22.44 0.22 -5.92 16 16 C -0.05 -1.48 10.03 22.23 0.22 -1.25 16 17 C -0.25 -10.74 9.13 22.42 0.20 -10.53 16 18 C 0.13 6.79 6.64 22.56 0.15 6.94 16 19 O -0.23 -14.48 9.76 -22.80 -0.22 -14.71 16 20 C -0.41 -24.51 9.44 67.92 0.64 -23.87 16 21 H 0.11 5.63 5.29 -2.91 -0.02 5.62 16 22 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 23 N -0.92 -57.94 13.67 21.61 0.30 -57.64 16 24 Si 1.02 43.10 29.55 68.60 2.03 45.13 16 25 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 28 C -0.21 -9.86 8.60 22.52 0.19 -9.66 16 29 C 0.09 2.14 5.53 86.86 0.48 2.62 16 30 H 0.06 0.80 8.11 -2.39 -0.02 0.78 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.11 0.74 7.83 -2.38 -0.02 0.72 16 34 H 0.09 0.90 8.01 -2.39 -0.02 0.88 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.05 1.01 6.73 -2.38 -0.02 1.00 16 38 H 0.43 10.59 8.30 -92.71 -0.77 9.82 16 39 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 40 H 0.16 3.80 8.06 -2.91 -0.02 3.77 16 41 H 0.13 5.46 5.71 -2.91 -0.02 5.44 16 42 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 43 H 0.10 5.28 6.44 -2.91 -0.02 5.26 16 44 H 0.07 1.72 8.04 -2.39 -0.02 1.70 16 45 H 0.08 2.29 6.16 -2.38 -0.01 2.27 16 Total: -1.00 -78.98 371.28 4.01 -74.98 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.26 Total: 32.57 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 5.79 Total: -5.63 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -3.76 Total: -95.44 kcal Atomic # 8 Polarization: -51.29 SS G_CDS: -0.31 Total: -51.60 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -78.98 4.01 -74.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741098866.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.599 kcal (2) G-P(sol) polarization free energy of solvation -78.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds