Wall clock time and date at job start Tue Mar 31 2020 17:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.27948 * 2 1 4 4 C 1.50689 * 109.37506 * 119.70765 * 2 1 3 5 5 O 1.21297 * 120.32123 * 265.14744 * 4 2 1 6 6 N 1.35155 * 119.36222 * 85.42089 * 4 2 1 7 7 C 1.40360 * 118.50539 * 0.25746 * 6 4 2 8 8 C 1.38010 * 120.38618 * 198.51951 * 7 6 4 9 9 C 1.39887 * 119.76527 * 180.02562 * 8 7 6 10 10 C 1.47381 * 120.08675 * 179.97438 * 9 8 7 11 11 O 1.21519 * 120.00523 * 359.97438 * 10 9 8 12 12 O 1.34766 * 119.99908 * 179.97438 * 10 9 8 13 13 C 1.45205 * 116.99714 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46730 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47127 * 179.97438 * 14 13 12 16 16 C 1.50694 * 109.47187 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00210 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99981 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99981 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99943 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47297 * 59.99778 * 20 18 16 22 22 H 1.48496 * 109.46909 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46886 * 299.99604 * 20 18 16 24 24 C 1.39832 * 119.82309 * 359.97438 * 9 8 7 25 25 C 1.37662 * 120.14937 * 0.06498 * 24 9 8 26 26 C 1.39137 * 120.17479 * 359.97438 * 25 24 9 27 27 N 1.39045 * 119.97499 * 179.86631 * 26 25 24 28 28 C 1.46905 * 110.99957 * 19.49067 * 27 26 25 29 29 H 1.08997 * 109.47568 * 300.28851 * 1 2 3 30 30 H 1.08998 * 109.47399 * 60.29485 * 1 2 3 31 31 H 1.09004 * 109.47073 * 180.29218 * 1 2 3 32 32 H 0.97002 * 120.74746 * 180.50601 * 6 4 2 33 33 H 1.08003 * 120.11642 * 0.03308 * 8 7 6 34 34 H 1.09002 * 109.47237 * 299.99733 * 13 12 10 35 35 H 1.08993 * 109.47242 * 60.00063 * 13 12 10 36 36 H 1.08997 * 109.47266 * 300.00347 * 14 13 12 37 37 H 1.09005 * 109.47433 * 60.00277 * 14 13 12 38 38 H 1.09002 * 109.47264 * 300.00121 * 15 14 13 39 39 H 1.09002 * 109.46827 * 60.00406 * 15 14 13 40 40 H 0.96995 * 119.99923 * 180.02562 * 19 18 16 41 41 H 1.07998 * 119.92447 * 180.02562 * 24 9 8 42 42 H 1.07993 * 119.91289 * 179.97438 * 25 24 9 43 43 H 1.08997 * 109.46875 * 177.52208 * 28 27 26 44 44 H 1.09000 * 109.46926 * 297.52223 * 28 27 26 45 45 H 1.09000 * 109.47022 * 57.52048 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8899 1.0288 0.0000 4 6 2.0299 -0.7045 1.2347 5 8 2.3166 -0.0700 2.2280 6 7 2.1610 -2.0496 1.2229 7 6 1.8291 -2.7447 0.0496 8 6 1.5775 -4.1011 0.0893 9 6 1.2483 -4.7811 -1.0880 10 6 0.9787 -6.2297 -1.0539 11 8 1.0428 -6.8351 -0.0022 12 8 0.6612 -6.8829 -2.1891 13 6 0.4093 -8.3088 -2.0806 14 6 0.0663 -8.8725 -3.4610 15 6 -0.1986 -10.3751 -3.3469 16 6 -0.5358 -10.9304 -4.7067 17 1 -0.5593 -10.2769 -5.5662 18 6 -0.8154 -12.2726 -4.8532 19 7 -0.7872 -13.0682 -3.8065 20 14 -1.2341 -12.9608 -6.5387 21 1 -0.0970 -12.7279 -7.4649 22 1 -1.4910 -14.4191 -6.4279 23 1 -2.4466 -12.2825 -7.0630 24 6 1.1756 -4.0828 -2.2973 25 6 1.4284 -2.7300 -2.3308 26 6 1.7569 -2.0508 -1.1618 27 7 2.0142 -0.6849 -1.2009 28 6 1.4539 -0.0782 -2.4159 29 1 -0.3634 0.5183 0.8873 30 1 -0.3634 0.5092 -0.8926 31 1 -0.3633 -1.0277 0.0052 32 1 2.4740 -2.5243 2.0088 33 1 1.6344 -4.6357 1.0260 34 1 1.2991 -8.8068 -1.6953 35 1 -0.4256 -8.4796 -1.4011 36 1 -0.8236 -8.3745 -3.8460 37 1 0.9010 -8.7017 -4.1410 38 1 0.6916 -10.8728 -2.9622 39 1 -1.0332 -10.5463 -2.6670 40 1 -0.9835 -14.0125 -3.9097 41 1 0.9212 -4.6061 -3.2072 42 1 1.3716 -2.1946 -3.2669 43 1 1.6310 0.9971 -2.3998 44 1 1.9335 -0.5124 -3.2931 45 1 0.3816 -0.2693 -2.4561 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750567706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:06 Heat of formation + Delta-G solvation = -90.521963 kcal Electronic energy + Delta-G solvation = -27408.185310 eV Core-core repulsion = 23390.543638 eV Total energy + Delta-G solvation = -4017.641671 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.11961 -40.28808 -39.11776 -37.60760 -36.37668 -35.63921 -34.00089 -32.28552 -31.68539 -30.42235 -29.74152 -27.83269 -27.00075 -24.89735 -23.71678 -23.41848 -22.62350 -21.49166 -20.39018 -19.40442 -18.96332 -18.30452 -17.09535 -16.65123 -16.57803 -16.34635 -16.17375 -16.04908 -15.54869 -15.12436 -14.74435 -14.69445 -14.48295 -14.16420 -14.01075 -13.61894 -13.49361 -13.23527 -12.95257 -12.69667 -12.55333 -12.24057 -12.17155 -12.15270 -11.92401 -11.61733 -11.14998 -10.96859 -10.76178 -10.68188 -10.65824 -10.48555 -10.44329 -10.40773 -9.74225 -9.53208 -9.19451 -9.03051 -8.39863 -8.13948 -6.04724 -4.07960 0.28730 0.75942 1.81881 2.38335 2.45625 2.82954 2.96079 3.31285 3.35872 3.38108 3.41481 3.58721 4.00946 4.20662 4.33173 4.41576 4.55315 4.61275 4.64051 4.78117 4.81382 4.83304 4.98461 5.00908 5.15403 5.28088 5.31115 5.32428 5.39432 5.55872 5.60238 5.63401 5.91318 5.98840 6.02758 6.05850 6.13359 6.36473 6.46631 6.51710 6.64598 6.79999 6.95809 7.41374 7.58420 7.69559 7.86251 7.93359 8.34198 8.98053 9.56280 11.06631 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027689 B = 0.001891 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.005364 B =14802.889128 C =15558.478215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.067 3.933 3 H 0.131 0.869 4 C 0.531 3.469 5 O -0.516 6.516 6 N -0.658 5.658 7 C 0.103 3.897 8 C -0.058 4.058 9 C -0.119 4.119 10 C 0.506 3.494 11 O -0.510 6.510 12 O -0.352 6.352 13 C 0.069 3.931 14 C -0.109 4.109 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.896 3.104 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.045 4.045 25 C -0.151 4.151 26 C 0.116 3.884 27 N -0.482 5.482 28 C 0.016 3.984 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.418 0.582 33 H 0.147 0.853 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.020 0.980 39 H 0.019 0.981 40 H 0.262 0.738 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.003 29.639 5.122 30.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.042 4.042 3 H 0.149 0.851 4 C 0.318 3.682 5 O -0.389 6.389 6 N -0.304 5.304 7 C 0.005 3.995 8 C -0.080 4.080 9 C -0.122 4.122 10 C 0.350 3.650 11 O -0.400 6.400 12 O -0.269 6.269 13 C -0.004 4.004 14 C -0.146 4.146 15 C -0.013 4.013 16 C -0.560 4.560 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.065 4.065 25 C -0.172 4.172 26 C 0.015 3.985 27 N -0.196 5.196 28 C -0.129 4.129 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.257 0.743 33 H 0.164 0.836 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.072 0.928 41 H 0.166 0.834 42 H 0.163 0.837 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.612 29.902 5.920 30.829 hybrid contribution -0.697 -1.034 -0.396 1.309 sum 3.915 28.867 5.524 29.651 Atomic orbital electron populations 1.22447 0.93305 1.03991 1.04582 1.22034 0.96048 0.99768 0.86379 0.85094 1.20562 0.76521 0.81753 0.89378 1.90808 1.48078 1.65171 1.34884 1.43708 1.65099 1.07220 1.14405 1.17181 1.05556 0.91735 0.84979 1.20646 0.97045 0.91331 0.98957 1.18884 1.08349 0.90633 0.94320 1.20887 0.73846 0.87900 0.82339 1.90843 1.48322 1.69005 1.31809 1.86537 1.79071 1.26451 1.34810 1.23547 1.01296 0.74065 1.01452 1.21770 1.01262 0.99397 0.92197 1.19050 0.97342 0.87195 0.97736 1.21126 1.47480 0.93548 0.93893 0.92471 1.25036 0.95456 0.97160 0.96843 1.69953 1.49122 1.04950 1.29294 0.86600 0.78949 0.77837 0.84279 1.20182 1.21277 1.20186 1.21405 0.93928 0.93346 0.97774 1.20969 1.04177 0.94844 0.97195 1.18813 0.97654 0.89404 0.92640 1.58416 1.56158 1.00866 1.04150 1.22686 0.98963 1.00650 0.90646 0.90253 0.89963 0.91392 0.74298 0.83579 0.91360 0.91387 0.92100 0.92081 0.96212 0.96227 0.92823 0.83365 0.83745 0.89839 0.89354 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.94 8.47 37.16 0.31 -0.62 16 2 C 0.07 0.44 2.92 -69.10 -0.20 0.23 16 3 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 4 C 0.53 4.95 7.17 -10.82 -0.08 4.87 16 5 O -0.52 -6.38 17.96 5.54 0.10 -6.28 16 6 N -0.66 -5.56 5.49 -9.65 -0.05 -5.61 16 7 C 0.10 0.90 6.17 -83.45 -0.51 0.39 16 8 C -0.06 -0.58 9.48 -39.05 -0.37 -0.95 16 9 C -0.12 -1.34 5.88 -104.96 -0.62 -1.96 16 10 C 0.51 7.53 7.89 34.45 0.27 7.80 16 11 O -0.51 -8.90 16.13 -19.28 -0.31 -9.21 16 12 O -0.35 -5.58 9.46 -40.67 -0.38 -5.96 16 13 C 0.07 1.24 5.48 37.16 0.20 1.44 16 14 C -0.11 -2.18 5.53 -26.73 -0.15 -2.32 16 15 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 16 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 20 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.04 -0.41 9.60 -39.20 -0.38 -0.78 16 25 C -0.15 -1.07 8.95 -39.46 -0.35 -1.42 16 26 C 0.12 0.91 5.06 -83.67 -0.42 0.49 16 27 N -0.48 -3.11 4.85 -172.85 -0.84 -3.95 16 28 C 0.02 0.05 7.67 60.07 0.46 0.52 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.27 6.46 -51.93 -0.34 -0.07 16 31 H 0.07 0.43 7.28 -51.93 -0.38 0.05 16 32 H 0.42 2.99 8.90 -40.82 -0.36 2.63 16 33 H 0.15 1.40 7.65 -52.48 -0.40 1.00 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.15 1.25 7.59 -52.49 -0.40 0.85 16 42 H 0.14 0.65 5.91 -52.49 -0.31 0.34 16 43 H 0.08 0.17 8.10 -51.93 -0.42 -0.25 16 44 H 0.09 0.24 6.68 -51.93 -0.35 -0.10 16 45 H 0.05 0.15 6.57 -51.93 -0.34 -0.19 16 LS Contribution 374.15 15.07 5.64 5.64 Total: -1.00 -33.83 374.15 -8.73 -42.56 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -6.22 Total: -2.48 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -2.38 Total: -5.14 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: -0.15 Total: -35.40 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.60 Total: -21.46 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.83 -8.73 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750567706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.963 kcal (2) G-P(sol) polarization free energy of solvation -33.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds