Wall clock time and date at job start Tue Mar 31 2020 17:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.27948 * 2 1 4 4 C 1.50689 * 109.37506 * 119.70765 * 2 1 3 5 5 O 1.21297 * 120.32123 * 265.14744 * 4 2 1 6 6 N 1.35155 * 119.36222 * 85.42089 * 4 2 1 7 7 C 1.40360 * 118.50539 * 0.25746 * 6 4 2 8 8 C 1.38010 * 120.38618 * 198.51951 * 7 6 4 9 9 C 1.39887 * 119.76527 * 180.02562 * 8 7 6 10 10 C 1.47381 * 120.08675 * 179.97438 * 9 8 7 11 11 O 1.21519 * 120.00523 * 359.97438 * 10 9 8 12 12 O 1.34766 * 119.99908 * 179.97438 * 10 9 8 13 13 C 1.45205 * 116.99714 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46730 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47127 * 179.97438 * 14 13 12 16 16 C 1.50694 * 109.47187 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00210 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99981 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99981 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99943 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47297 * 59.99778 * 20 18 16 22 22 H 1.48496 * 109.46909 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46886 * 299.99604 * 20 18 16 24 24 C 1.39832 * 119.82309 * 359.97438 * 9 8 7 25 25 C 1.37662 * 120.14937 * 0.06498 * 24 9 8 26 26 C 1.39137 * 120.17479 * 359.97438 * 25 24 9 27 27 N 1.39045 * 119.97499 * 179.86631 * 26 25 24 28 28 C 1.46905 * 110.99957 * 19.49067 * 27 26 25 29 29 H 1.08997 * 109.47568 * 300.28851 * 1 2 3 30 30 H 1.08998 * 109.47399 * 60.29485 * 1 2 3 31 31 H 1.09004 * 109.47073 * 180.29218 * 1 2 3 32 32 H 0.97002 * 120.74746 * 180.50601 * 6 4 2 33 33 H 1.08003 * 120.11642 * 0.03308 * 8 7 6 34 34 H 1.09002 * 109.47237 * 299.99733 * 13 12 10 35 35 H 1.08993 * 109.47242 * 60.00063 * 13 12 10 36 36 H 1.08997 * 109.47266 * 300.00347 * 14 13 12 37 37 H 1.09005 * 109.47433 * 60.00277 * 14 13 12 38 38 H 1.09002 * 109.47264 * 300.00121 * 15 14 13 39 39 H 1.09002 * 109.46827 * 60.00406 * 15 14 13 40 40 H 0.96995 * 119.99923 * 180.02562 * 19 18 16 41 41 H 1.07998 * 119.92447 * 180.02562 * 24 9 8 42 42 H 1.07993 * 119.91289 * 179.97438 * 25 24 9 43 43 H 1.08997 * 109.46875 * 177.52208 * 28 27 26 44 44 H 1.09000 * 109.46926 * 297.52223 * 28 27 26 45 45 H 1.09000 * 109.47022 * 57.52048 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8899 1.0288 0.0000 4 6 2.0299 -0.7045 1.2347 5 8 2.3166 -0.0700 2.2280 6 7 2.1610 -2.0496 1.2229 7 6 1.8291 -2.7447 0.0496 8 6 1.5775 -4.1011 0.0893 9 6 1.2483 -4.7811 -1.0880 10 6 0.9787 -6.2297 -1.0539 11 8 1.0428 -6.8351 -0.0022 12 8 0.6612 -6.8829 -2.1891 13 6 0.4093 -8.3088 -2.0806 14 6 0.0663 -8.8725 -3.4610 15 6 -0.1986 -10.3751 -3.3469 16 6 -0.5358 -10.9304 -4.7067 17 1 -0.5593 -10.2769 -5.5662 18 6 -0.8154 -12.2726 -4.8532 19 7 -0.7872 -13.0682 -3.8065 20 14 -1.2341 -12.9608 -6.5387 21 1 -0.0970 -12.7279 -7.4649 22 1 -1.4910 -14.4191 -6.4279 23 1 -2.4466 -12.2825 -7.0630 24 6 1.1756 -4.0828 -2.2973 25 6 1.4284 -2.7300 -2.3308 26 6 1.7569 -2.0508 -1.1618 27 7 2.0142 -0.6849 -1.2009 28 6 1.4539 -0.0782 -2.4159 29 1 -0.3634 0.5183 0.8873 30 1 -0.3634 0.5092 -0.8926 31 1 -0.3633 -1.0277 0.0052 32 1 2.4740 -2.5243 2.0088 33 1 1.6344 -4.6357 1.0260 34 1 1.2991 -8.8068 -1.6953 35 1 -0.4256 -8.4796 -1.4011 36 1 -0.8236 -8.3745 -3.8460 37 1 0.9010 -8.7017 -4.1410 38 1 0.6916 -10.8728 -2.9622 39 1 -1.0332 -10.5463 -2.6670 40 1 -0.9835 -14.0125 -3.9097 41 1 0.9212 -4.6061 -3.2072 42 1 1.3716 -2.1946 -3.2669 43 1 1.6310 0.9971 -2.3998 44 1 1.9335 -0.5124 -3.2931 45 1 0.3816 -0.2693 -2.4561 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750567706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:05 Heat of formation + Delta-G solvation = -112.512838 kcal Electronic energy + Delta-G solvation = -27409.138906 eV Core-core repulsion = 23390.543638 eV Total energy + Delta-G solvation = -4018.595267 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.75725 -41.45695 -39.90235 -38.32591 -37.62023 -36.37984 -35.89674 -33.68636 -32.80969 -31.08817 -30.42658 -28.99663 -28.07839 -25.88257 -24.85454 -24.35665 -23.44684 -22.44648 -22.13570 -20.22059 -19.73273 -19.05448 -18.58087 -18.00493 -17.64617 -17.39988 -17.12286 -16.87053 -16.48304 -16.13205 -15.75640 -15.65406 -15.42247 -15.28401 -14.88284 -14.50196 -14.21642 -14.14284 -13.91898 -13.80530 -13.71207 -13.63625 -13.06705 -12.92896 -12.78386 -12.67288 -12.51917 -12.41008 -12.18814 -12.05628 -11.90385 -11.84338 -11.47071 -11.39084 -11.33803 -11.22058 -11.07720 -10.54805 -9.69563 -8.77182 -8.19745 -6.31244 -0.50011 0.06920 1.09203 1.42868 1.46533 1.49739 1.50890 1.54999 1.87477 2.39783 2.43255 2.66392 2.96915 3.14150 3.42857 3.55811 3.73524 3.89489 4.01068 4.02879 4.06809 4.08614 4.15340 4.39425 4.43498 4.47423 4.54413 4.60210 4.64229 4.68480 4.82899 4.86479 4.98595 4.99727 5.10398 5.11160 5.22636 5.38994 5.39407 5.43623 5.52629 5.59935 5.66408 5.77353 5.82295 6.01130 6.20908 6.65226 6.72355 6.84919 7.38193 8.92205 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027689 B = 0.001891 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.005364 B =14802.889128 C =15558.478215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.071 3.929 3 H 0.147 0.853 4 C 0.525 3.475 5 O -0.554 6.554 6 N -0.657 5.657 7 C 0.094 3.906 8 C -0.059 4.059 9 C -0.144 4.144 10 C 0.505 3.495 11 O -0.545 6.545 12 O -0.347 6.347 13 C 0.079 3.921 14 C -0.092 4.092 15 C 0.025 3.975 16 C -0.542 4.542 17 H 0.067 0.933 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.969 3.031 21 H -0.265 1.265 22 H -0.286 1.286 23 H -0.265 1.265 24 C -0.037 4.037 25 C -0.141 4.141 26 C 0.127 3.873 27 N -0.487 5.487 28 C 0.008 3.992 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.054 0.946 32 H 0.419 0.581 33 H 0.140 0.860 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.069 0.931 38 H -0.005 1.005 39 H -0.004 1.004 40 H 0.264 0.736 41 H 0.157 0.843 42 H 0.180 0.820 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.735 32.336 2.391 32.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.038 4.038 3 H 0.165 0.835 4 C 0.313 3.687 5 O -0.431 6.431 6 N -0.302 5.302 7 C -0.003 4.003 8 C -0.081 4.081 9 C -0.147 4.147 10 C 0.353 3.647 11 O -0.437 6.437 12 O -0.263 6.263 13 C 0.005 3.995 14 C -0.130 4.130 15 C -0.013 4.013 16 C -0.580 4.580 17 H 0.086 0.914 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.793 3.207 21 H -0.190 1.190 22 H -0.212 1.212 23 H -0.189 1.189 24 C -0.057 4.057 25 C -0.162 4.162 26 C 0.025 3.975 27 N -0.201 5.201 28 C -0.136 4.136 29 H 0.096 0.904 30 H 0.126 0.874 31 H 0.073 0.927 32 H 0.259 0.741 33 H 0.157 0.843 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.014 0.986 39 H 0.014 0.986 40 H 0.072 0.928 41 H 0.174 0.826 42 H 0.197 0.803 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.346 32.630 3.161 33.070 hybrid contribution -0.558 -1.736 0.502 1.891 sum 3.788 30.894 3.663 31.340 Atomic orbital electron populations 1.22440 0.91969 1.03496 1.05860 1.22092 0.96925 0.99895 0.84930 0.83529 1.21173 0.75780 0.81739 0.89977 1.90786 1.49942 1.65823 1.36502 1.43754 1.64613 1.07309 1.14571 1.17199 1.06196 0.91351 0.85601 1.20568 0.97166 0.91874 0.98456 1.18713 1.11573 0.88456 0.95930 1.21550 0.72644 0.89172 0.81373 1.90823 1.50154 1.69971 1.32771 1.86510 1.79389 1.24967 1.35471 1.23165 1.00826 0.75566 0.99929 1.21451 1.02016 0.95943 0.93558 1.18942 0.95248 0.90688 0.96378 1.21603 1.47170 0.94163 0.95030 0.91438 1.26035 0.95257 0.97670 1.01142 1.70098 1.50232 1.05293 1.31831 0.85435 0.79247 0.76902 0.79078 1.18991 1.21166 1.18942 1.21538 0.93060 0.94137 0.96940 1.21261 1.02747 0.93950 0.98205 1.19055 0.95777 0.90381 0.92319 1.58409 1.56210 1.00101 1.05335 1.22925 0.99725 1.01752 0.89241 0.90379 0.87350 0.92688 0.74117 0.84261 0.92003 0.91953 0.91130 0.91194 0.98619 0.98586 0.92753 0.82560 0.80315 0.88002 0.88168 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 8.47 71.98 0.61 -0.74 16 2 C 0.07 0.75 2.92 44.24 0.13 0.88 16 3 H 0.15 1.13 8.14 -2.39 -0.02 1.11 16 4 C 0.53 9.43 7.17 87.59 0.63 10.06 16 5 O -0.55 -13.76 17.96 -3.08 -0.06 -13.81 16 6 N -0.66 -10.99 5.49 -302.62 -1.66 -12.66 16 7 C 0.09 1.57 6.17 38.10 0.24 1.80 16 8 C -0.06 -1.18 9.48 22.62 0.21 -0.97 16 9 C -0.14 -3.19 5.88 -20.09 -0.12 -3.31 16 10 C 0.51 15.31 7.89 70.23 0.55 15.86 16 11 O -0.55 -19.84 16.13 19.77 0.32 -19.53 16 12 O -0.35 -10.93 9.46 -56.77 -0.54 -11.47 16 13 C 0.08 2.86 5.48 71.98 0.39 3.26 16 14 C -0.09 -3.69 5.53 30.60 0.17 -3.52 16 15 C 0.02 1.28 4.97 29.85 0.15 1.43 16 16 C -0.54 -30.15 9.11 25.60 0.23 -29.91 16 17 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 18 C 0.00 -0.19 5.46 84.66 0.46 0.28 16 19 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16 20 Si 0.97 43.42 29.54 68.60 2.03 45.45 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 24 C -0.04 -0.59 9.60 22.52 0.22 -0.38 16 25 C -0.14 -1.52 8.95 22.35 0.20 -1.32 16 26 C 0.13 1.67 5.06 38.59 0.20 1.87 16 27 N -0.49 -4.71 4.85 -700.77 -3.40 -8.11 16 28 C 0.01 0.02 7.67 127.69 0.98 1.00 16 29 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.11 0.26 6.46 -2.39 -0.02 0.24 16 31 H 0.05 0.58 7.28 -2.38 -0.02 0.56 16 32 H 0.42 6.31 8.90 -92.71 -0.83 5.48 16 33 H 0.14 2.87 7.65 -2.91 -0.02 2.85 16 34 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 38 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 39 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 40 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 41 H 0.16 2.23 7.59 -2.91 -0.02 2.21 16 42 H 0.18 0.70 5.91 -2.91 -0.02 0.68 16 43 H 0.10 -0.08 8.10 -2.39 -0.02 -0.10 16 44 H 0.10 0.04 6.68 -2.39 -0.02 0.02 16 45 H 0.07 0.03 6.57 -2.39 -0.02 0.02 16 Total: -1.00 -74.91 374.15 2.43 -72.48 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 0.20 Total: 7.70 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 5.25 Total: -3.71 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -4.77 Total: -77.11 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -0.27 Total: -44.81 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -74.91 2.43 -72.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750567706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.031 kcal (2) G-P(sol) polarization free energy of solvation -74.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds