Wall clock time and date at job start Tue Mar 31 2020 17:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47175 * 2 1 4 4 N 1.46506 * 109.47259 * 239.99821 * 2 1 3 5 5 C 1.34775 * 119.99878 * 84.99577 * 4 2 1 6 6 O 1.21370 * 119.99911 * 0.02562 * 5 4 2 7 7 C 1.49351 * 120.00335 * 179.97438 * 5 4 2 8 8 O 1.21376 * 119.99407 * 0.02562 * 7 5 4 9 9 N 1.34775 * 120.00335 * 179.97438 * 7 5 4 10 10 C 1.39720 * 120.00070 * 174.78848 * 9 7 5 11 11 C 1.39019 * 120.04024 * 326.28570 * 10 9 7 12 12 C 1.38142 * 120.06190 * 180.02562 * 11 10 9 13 13 C 1.38187 * 120.14375 * 359.71238 * 12 11 10 14 14 C 1.38921 * 120.07736 * 0.56063 * 13 12 11 15 15 O 1.35751 * 120.02480 * 179.71382 * 14 13 12 16 16 C 1.34838 * 116.99319 * 173.82372 * 15 14 13 17 17 H 1.07993 * 120.00104 * 354.65418 * 16 15 14 18 18 C 1.38656 * 119.99350 * 174.65508 * 16 15 14 19 19 N 1.31559 * 120.00447 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99634 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47295 * 89.99885 * 20 18 16 22 22 H 1.48499 * 109.47168 * 209.99864 * 20 18 16 23 23 H 1.48504 * 109.47157 * 330.00043 * 20 18 16 24 24 C 1.38756 * 119.93953 * 359.44464 * 14 13 12 25 25 C 1.52997 * 109.47269 * 119.99968 * 2 1 3 26 26 C 1.53779 * 113.61387 * 283.70769 * 25 2 1 27 27 C 1.53959 * 87.02064 * 220.04553 * 26 25 2 28 28 C 1.53784 * 113.61358 * 186.09760 * 25 2 1 29 29 H 1.08995 * 109.47146 * 302.57777 * 1 2 3 30 30 H 1.09001 * 109.47218 * 62.58077 * 1 2 3 31 31 H 1.09009 * 109.46974 * 182.58221 * 1 2 3 32 32 H 0.96999 * 120.00094 * 265.00585 * 4 2 1 33 33 H 0.97001 * 119.99902 * 354.79282 * 9 7 5 34 34 H 1.08003 * 119.97463 * 359.97438 * 11 10 9 35 35 H 1.07997 * 119.92991 * 180.02562 * 12 11 10 36 36 H 1.07996 * 119.95953 * 180.30607 * 13 12 11 37 37 H 0.96999 * 120.00020 * 179.97438 * 19 18 16 38 38 H 1.07999 * 120.07462 * 180.24838 * 24 14 13 39 39 H 1.09002 * 112.84881 * 54.90394 * 25 2 1 40 40 H 1.08998 * 113.61348 * 334.56499 * 26 25 2 41 41 H 1.09004 * 113.61425 * 105.47315 * 26 25 2 42 42 H 1.08995 * 113.53916 * 270.81523 * 27 26 25 43 43 H 1.09000 * 113.74278 * 139.93674 * 27 26 25 44 44 H 1.08999 * 113.61656 * 254.52408 * 28 25 2 45 45 H 1.08994 * 113.61673 * 25.43935 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1470 -0.0184 -2.3572 6 8 1.8587 1.1593 -2.4116 7 6 2.6454 -0.7222 -3.5765 8 8 2.9342 -1.8998 -3.5219 9 7 2.7736 -0.0500 -4.7376 10 6 3.3414 -0.6777 -5.8492 11 6 4.3538 -1.6148 -5.6777 12 6 4.9159 -2.2353 -6.7765 13 6 4.4701 -1.9313 -8.0486 14 6 3.4627 -0.9916 -8.2273 15 8 3.0295 -0.6896 -9.4779 16 6 1.9653 0.1326 -9.5750 17 1 1.4447 0.4497 -8.6835 18 6 1.5393 0.5709 -10.8196 19 7 2.1731 0.1842 -11.9056 20 14 0.0653 1.7106 -10.9542 21 1 0.5231 3.1218 -10.8897 22 1 -0.6274 1.4735 -12.2462 23 1 -0.8717 1.4424 -9.8337 24 6 2.8957 -0.3663 -7.1260 25 6 2.0400 -0.7212 1.2492 26 6 1.9306 0.1182 2.5330 27 6 3.3072 -0.4487 2.9252 28 6 3.5663 -0.6485 1.4225 29 1 -0.3633 0.5533 0.8659 30 1 -0.3634 0.4732 -0.9122 31 1 -0.3633 -1.0267 0.0463 32 1 2.2490 -1.6318 -1.1526 33 1 2.4717 0.8696 -4.8015 34 1 4.7019 -1.8575 -4.6844 35 1 5.7020 -2.9633 -6.6407 36 1 4.9082 -2.4219 -8.9052 37 1 1.8748 0.4906 -12.7763 38 1 2.1096 0.3617 -7.2621 39 1 1.6366 -1.7288 1.3506 40 1 1.9362 1.1933 2.3535 41 1 1.1231 -0.1975 3.1936 42 1 3.2501 -1.3814 3.4862 43 1 3.9678 0.2842 3.3885 44 1 4.0775 -1.5822 1.1880 45 1 4.0199 0.2166 0.9390 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756805321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:58 Heat of formation + Delta-G solvation = -51.587896 kcal Electronic energy + Delta-G solvation = -27472.869651 eV Core-core repulsion = 23456.916288 eV Total energy + Delta-G solvation = -4015.953364 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.02965 -39.87194 -38.98945 -38.28182 -36.55475 -35.38730 -34.21997 -32.26598 -31.11766 -29.54699 -28.72070 -26.53720 -25.77696 -25.50090 -24.92719 -22.28383 -21.88959 -21.14286 -20.42543 -19.77564 -18.77589 -18.02470 -17.38357 -16.84611 -16.23085 -15.87595 -15.63294 -15.47092 -15.10565 -14.93219 -14.60783 -14.26688 -13.98327 -13.95550 -13.59934 -13.38939 -13.05045 -13.01336 -12.86484 -12.55980 -12.42027 -12.23511 -11.92534 -11.75429 -11.65262 -11.59068 -11.08789 -11.01818 -10.97900 -10.81111 -10.78089 -10.68049 -10.45075 -9.96332 -9.61185 -9.49284 -9.42618 -8.83484 -7.83167 -7.23563 -6.47437 -4.07249 1.19816 2.07348 2.25318 2.36901 3.11390 3.12842 3.17468 3.19916 3.53080 3.94789 4.10702 4.16279 4.23891 4.39355 4.44442 4.53826 4.75125 4.83729 4.99857 5.07686 5.22386 5.25000 5.29639 5.32429 5.38286 5.49620 5.54914 5.58136 5.61651 5.75687 5.86526 5.90140 5.96234 6.00155 6.09546 6.13608 6.18148 6.52887 6.71734 6.86326 6.98156 7.08662 7.22396 7.36203 7.46015 7.66893 7.73204 7.95838 8.01866 8.97927 9.66473 10.70256 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018135 B = 0.002333 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.611565 B =12000.973926 C =13276.508561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.150 3.850 3 H 0.092 0.908 4 N -0.695 5.695 5 C 0.512 3.488 6 O -0.519 6.519 7 C 0.503 3.497 8 O -0.502 6.502 9 N -0.636 5.636 10 C 0.173 3.827 11 C -0.204 4.204 12 C -0.063 4.063 13 C -0.195 4.195 14 C 0.168 3.832 15 O -0.174 6.174 16 C -0.393 4.393 17 H 0.091 0.909 18 C 0.040 3.960 19 N -0.861 5.861 20 Si 0.940 3.060 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.250 4.250 25 C -0.122 4.122 26 C -0.129 4.129 27 C -0.143 4.143 28 C -0.137 4.137 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.413 0.587 33 H 0.419 0.581 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.270 0.730 38 H 0.132 0.868 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.271 -0.707 26.672 26.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.046 3.954 3 H 0.110 0.890 4 N -0.348 5.348 5 C 0.293 3.707 6 O -0.394 6.394 7 C 0.284 3.716 8 O -0.376 6.376 9 N -0.282 5.282 10 C 0.081 3.919 11 C -0.225 4.225 12 C -0.082 4.082 13 C -0.215 4.215 14 C 0.113 3.887 15 O -0.077 6.077 16 C -0.469 4.469 17 H 0.108 0.892 18 C -0.164 4.164 19 N -0.495 5.495 20 Si 0.765 3.235 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.192 1.192 24 C -0.271 4.271 25 C -0.141 4.141 26 C -0.167 4.167 27 C -0.180 4.180 28 C -0.174 4.174 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.249 0.751 33 H 0.256 0.744 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.080 0.920 38 H 0.150 0.850 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.233 -0.708 26.228 26.238 hybrid contribution -0.894 0.629 -0.087 1.097 sum -1.127 -0.079 26.140 26.165 Atomic orbital electron populations 1.22171 0.94707 1.02491 1.02887 1.21139 0.94430 0.97252 0.82588 0.88966 1.45789 1.65376 1.14979 1.08674 1.20106 0.78998 0.86970 0.84660 1.90775 1.48501 1.15293 1.84828 1.20087 0.79939 0.87034 0.84548 1.90784 1.47585 1.14698 1.84522 1.43149 1.58828 1.17033 1.09164 1.17393 0.93624 0.96007 0.84891 1.20517 1.00014 1.02967 0.99003 1.20522 0.98233 0.98041 0.91357 1.20291 1.01466 1.02393 0.97349 1.19075 0.91984 0.92243 0.85396 1.84025 1.43946 1.58650 1.21043 1.21287 1.04650 1.26496 0.94469 0.89175 1.25285 0.99154 0.97785 0.94204 1.70034 1.39332 1.42077 0.98077 0.85726 0.79832 0.79613 0.78365 1.19825 1.20217 1.19197 1.20844 1.07073 1.08647 0.90578 1.22899 0.97043 1.00262 0.93869 1.22907 0.97837 0.99883 0.96028 1.22847 0.97263 1.01366 0.96555 1.22930 0.95362 1.02645 0.96476 0.91241 0.91833 0.92190 0.75136 0.74428 0.86345 0.86416 0.86199 0.91963 0.84996 0.88452 0.89741 0.91094 0.90117 0.91291 0.91158 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.41 37.16 0.35 -0.90 16 2 C 0.15 1.19 2.27 -67.93 -0.15 1.03 16 3 H 0.09 0.84 7.51 -51.93 -0.39 0.45 16 4 N -0.70 -6.74 4.95 -54.26 -0.27 -7.01 16 5 C 0.51 6.59 7.85 -11.63 -0.09 6.50 16 6 O -0.52 -7.60 16.15 5.48 0.09 -7.51 16 7 C 0.50 7.59 7.62 -11.63 -0.09 7.50 16 8 O -0.50 -8.37 14.18 5.47 0.08 -8.29 16 9 N -0.64 -10.23 5.32 -10.31 -0.05 -10.29 16 10 C 0.17 3.32 6.27 -83.78 -0.52 2.79 16 11 C -0.20 -3.80 8.65 -39.33 -0.34 -4.14 16 12 C -0.06 -1.14 10.03 -39.64 -0.40 -1.54 16 13 C -0.20 -4.10 9.99 -39.35 -0.39 -4.49 16 14 C 0.17 4.01 6.64 -39.14 -0.26 3.75 16 15 O -0.17 -4.88 9.76 0.03 0.00 -4.88 16 16 C -0.39 -10.85 9.44 30.89 0.29 -10.55 16 17 H 0.09 2.31 5.30 -52.49 -0.28 2.03 16 18 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 19 N -0.86 -25.00 13.67 55.48 0.76 -24.24 16 20 Si 0.94 20.41 29.55 -169.99 -5.02 15.38 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 C -0.25 -5.41 9.05 -39.19 -0.35 -5.76 16 25 C -0.12 -0.72 3.17 -89.81 -0.29 -1.00 16 26 C -0.13 -0.65 7.49 -25.83 -0.19 -0.85 16 27 C -0.14 -0.74 8.09 -25.82 -0.21 -0.95 16 28 C -0.14 -0.85 7.53 -25.91 -0.20 -1.04 16 29 H 0.07 0.42 8.06 -51.93 -0.42 0.01 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.41 3.60 8.07 -40.82 -0.33 3.27 16 33 H 0.42 6.05 8.30 -40.82 -0.34 5.71 16 34 H 0.12 2.09 6.44 -52.48 -0.34 1.75 16 35 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 36 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 37 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.13 2.83 5.71 -52.49 -0.30 2.53 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.44 8.05 -51.93 -0.42 0.02 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 LS Contribution 380.86 15.07 5.74 5.74 Total: -1.00 -31.88 380.86 -7.80 -39.67 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.17 Total: 10.08 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -2.94 Total: -8.65 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.43 Total: -41.54 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: 0.17 Total: -20.69 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.88 -7.80 -39.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756805321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.917 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds