Wall clock time and date at job start Tue Mar 31 2020 17:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47175 * 2 1 4 4 N 1.46506 * 109.47259 * 239.99821 * 2 1 3 5 5 C 1.34775 * 119.99878 * 84.99577 * 4 2 1 6 6 O 1.21370 * 119.99911 * 0.02562 * 5 4 2 7 7 C 1.49351 * 120.00335 * 179.97438 * 5 4 2 8 8 O 1.21376 * 119.99407 * 0.02562 * 7 5 4 9 9 N 1.34775 * 120.00335 * 179.97438 * 7 5 4 10 10 C 1.39720 * 120.00070 * 174.78848 * 9 7 5 11 11 C 1.39019 * 120.04024 * 326.28570 * 10 9 7 12 12 C 1.38142 * 120.06190 * 180.02562 * 11 10 9 13 13 C 1.38187 * 120.14375 * 359.71238 * 12 11 10 14 14 C 1.38921 * 120.07736 * 0.56063 * 13 12 11 15 15 O 1.35751 * 120.02480 * 179.71382 * 14 13 12 16 16 C 1.34838 * 116.99319 * 173.82372 * 15 14 13 17 17 H 1.07993 * 120.00104 * 354.65418 * 16 15 14 18 18 C 1.38656 * 119.99350 * 174.65508 * 16 15 14 19 19 N 1.31559 * 120.00447 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99634 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47295 * 89.99885 * 20 18 16 22 22 H 1.48499 * 109.47168 * 209.99864 * 20 18 16 23 23 H 1.48504 * 109.47157 * 330.00043 * 20 18 16 24 24 C 1.38756 * 119.93953 * 359.44464 * 14 13 12 25 25 C 1.52997 * 109.47269 * 119.99968 * 2 1 3 26 26 C 1.53779 * 113.61387 * 283.70769 * 25 2 1 27 27 C 1.53959 * 87.02064 * 220.04553 * 26 25 2 28 28 C 1.53784 * 113.61358 * 186.09760 * 25 2 1 29 29 H 1.08995 * 109.47146 * 302.57777 * 1 2 3 30 30 H 1.09001 * 109.47218 * 62.58077 * 1 2 3 31 31 H 1.09009 * 109.46974 * 182.58221 * 1 2 3 32 32 H 0.96999 * 120.00094 * 265.00585 * 4 2 1 33 33 H 0.97001 * 119.99902 * 354.79282 * 9 7 5 34 34 H 1.08003 * 119.97463 * 359.97438 * 11 10 9 35 35 H 1.07997 * 119.92991 * 180.02562 * 12 11 10 36 36 H 1.07996 * 119.95953 * 180.30607 * 13 12 11 37 37 H 0.96999 * 120.00020 * 179.97438 * 19 18 16 38 38 H 1.07999 * 120.07462 * 180.24838 * 24 14 13 39 39 H 1.09002 * 112.84881 * 54.90394 * 25 2 1 40 40 H 1.08998 * 113.61348 * 334.56499 * 26 25 2 41 41 H 1.09004 * 113.61425 * 105.47315 * 26 25 2 42 42 H 1.08995 * 113.53916 * 270.81523 * 27 26 25 43 43 H 1.09000 * 113.74278 * 139.93674 * 27 26 25 44 44 H 1.08999 * 113.61656 * 254.52408 * 28 25 2 45 45 H 1.08994 * 113.61673 * 25.43935 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1470 -0.0184 -2.3572 6 8 1.8587 1.1593 -2.4116 7 6 2.6454 -0.7222 -3.5765 8 8 2.9342 -1.8998 -3.5219 9 7 2.7736 -0.0500 -4.7376 10 6 3.3414 -0.6777 -5.8492 11 6 4.3538 -1.6148 -5.6777 12 6 4.9159 -2.2353 -6.7765 13 6 4.4701 -1.9313 -8.0486 14 6 3.4627 -0.9916 -8.2273 15 8 3.0295 -0.6896 -9.4779 16 6 1.9653 0.1326 -9.5750 17 1 1.4447 0.4497 -8.6835 18 6 1.5393 0.5709 -10.8196 19 7 2.1731 0.1842 -11.9056 20 14 0.0653 1.7106 -10.9542 21 1 0.5231 3.1218 -10.8897 22 1 -0.6274 1.4735 -12.2462 23 1 -0.8717 1.4424 -9.8337 24 6 2.8957 -0.3663 -7.1260 25 6 2.0400 -0.7212 1.2492 26 6 1.9306 0.1182 2.5330 27 6 3.3072 -0.4487 2.9252 28 6 3.5663 -0.6485 1.4225 29 1 -0.3633 0.5533 0.8659 30 1 -0.3634 0.4732 -0.9122 31 1 -0.3633 -1.0267 0.0463 32 1 2.2490 -1.6318 -1.1526 33 1 2.4717 0.8696 -4.8015 34 1 4.7019 -1.8575 -4.6844 35 1 5.7020 -2.9633 -6.6407 36 1 4.9082 -2.4219 -8.9052 37 1 1.8748 0.4906 -12.7763 38 1 2.1096 0.3617 -7.2621 39 1 1.6366 -1.7288 1.3506 40 1 1.9362 1.1933 2.3535 41 1 1.1231 -0.1975 3.1936 42 1 3.2501 -1.3814 3.4862 43 1 3.9678 0.2842 3.3885 44 1 4.0775 -1.5822 1.1880 45 1 4.0199 0.2166 0.9390 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756805321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:57 Heat of formation + Delta-G solvation = -72.469482 kcal Electronic energy + Delta-G solvation = -27473.775145 eV Core-core repulsion = 23456.916288 eV Total energy + Delta-G solvation = -4016.858857 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.20318 -40.98932 -40.24248 -39.40045 -38.18765 -36.37585 -35.51557 -34.24625 -31.89209 -31.13544 -30.37388 -27.46787 -27.09068 -26.23570 -26.07622 -23.58549 -23.39678 -22.12376 -21.51445 -20.64450 -19.92002 -19.66741 -18.97721 -17.95501 -17.29743 -17.04546 -16.94191 -16.72475 -16.19061 -16.07438 -15.97229 -15.63955 -15.50058 -15.24879 -15.01103 -14.61155 -14.25966 -14.13899 -13.60126 -13.57198 -13.36658 -13.31522 -13.20059 -13.04121 -12.74126 -12.70477 -12.55189 -12.42233 -12.23196 -12.12403 -11.54291 -11.45991 -11.35793 -11.28978 -11.16395 -10.81273 -10.69568 -10.29236 -9.44241 -8.95392 -8.48017 -6.16617 -0.06073 0.58431 0.70093 1.15429 1.35393 1.44066 1.52076 2.00873 2.16649 2.46185 2.80085 3.13292 3.24729 3.46520 3.60915 3.67485 3.79500 4.00436 4.07372 4.22963 4.27480 4.28204 4.37851 4.38749 4.56906 4.58497 4.68613 4.84296 4.88229 4.89301 4.96520 4.98664 5.08793 5.09435 5.12234 5.19712 5.23902 5.26976 5.30841 5.37737 5.59835 5.61617 5.63337 5.85948 5.99704 6.11929 6.24668 6.60618 6.80801 6.96454 7.74586 8.74548 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018135 B = 0.002333 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.611565 B =12000.973926 C =13276.508561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 H 0.081 0.919 4 N -0.677 5.677 5 C 0.518 3.482 6 O -0.539 6.539 7 C 0.506 3.494 8 O -0.515 6.515 9 N -0.636 5.636 10 C 0.178 3.822 11 C -0.194 4.194 12 C -0.048 4.048 13 C -0.206 4.206 14 C 0.134 3.866 15 O -0.223 6.223 16 C -0.413 4.413 17 H 0.100 0.900 18 C -0.020 4.020 19 N -0.916 5.916 20 Si 1.016 2.984 21 H -0.262 1.262 22 H -0.271 1.271 23 H -0.255 1.255 24 C -0.257 4.257 25 C -0.115 4.115 26 C -0.125 4.125 27 C -0.140 4.140 28 C -0.143 4.143 29 H 0.086 0.914 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.419 0.581 33 H 0.426 0.574 34 H 0.137 0.863 35 H 0.161 0.839 36 H 0.124 0.876 37 H 0.273 0.727 38 H 0.127 0.873 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.686 -1.069 30.113 30.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.099 0.901 4 N -0.330 5.330 5 C 0.298 3.702 6 O -0.416 6.416 7 C 0.289 3.711 8 O -0.390 6.390 9 N -0.283 5.283 10 C 0.084 3.916 11 C -0.214 4.214 12 C -0.066 4.066 13 C -0.225 4.225 14 C 0.083 3.917 15 O -0.129 6.129 16 C -0.489 4.489 17 H 0.117 0.883 18 C -0.218 4.218 19 N -0.554 5.554 20 Si 0.835 3.165 21 H -0.187 1.187 22 H -0.196 1.196 23 H -0.179 1.179 24 C -0.278 4.278 25 C -0.134 4.134 26 C -0.163 4.163 27 C -0.177 4.177 28 C -0.180 4.180 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.257 0.743 33 H 0.264 0.736 34 H 0.155 0.845 35 H 0.179 0.821 36 H 0.142 0.858 37 H 0.082 0.918 38 H 0.144 0.856 39 H 0.128 0.872 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.635 -1.094 29.761 29.788 hybrid contribution -0.612 0.601 -0.840 1.201 sum -1.247 -0.493 28.921 28.952 Atomic orbital electron populations 1.22149 0.94100 1.03136 1.02549 1.21314 0.94829 0.96836 0.82489 0.90138 1.45824 1.63769 1.15228 1.08149 1.19671 0.79281 0.86591 0.84659 1.90780 1.49842 1.15994 1.84996 1.20487 0.79094 0.86839 0.84727 1.90768 1.48096 1.15315 1.84798 1.43139 1.58903 1.17433 1.08776 1.17433 0.93435 0.95799 0.84910 1.20888 0.98848 1.01712 0.99997 1.20961 0.98183 0.97744 0.89732 1.20561 1.01038 1.01991 0.98957 1.19611 0.93485 0.93658 0.84988 1.83987 1.45173 1.60445 1.23310 1.21751 1.05261 1.26645 0.95258 0.88287 1.26538 1.02382 0.99370 0.93502 1.70172 1.41890 1.44552 0.98767 0.84626 0.75791 0.77330 0.78738 1.18713 1.19555 1.17917 1.20851 1.07060 1.08677 0.91241 1.22906 0.96691 1.00822 0.92975 1.22911 0.98222 0.99672 0.95501 1.22852 0.97244 1.01839 0.95784 1.22946 0.95502 1.02157 0.97409 0.89472 0.94089 0.91241 0.74307 0.73560 0.84502 0.82144 0.85838 0.91762 0.85557 0.87160 0.89943 0.89875 0.89218 0.91246 0.91114 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.41 71.98 0.68 -1.44 16 2 C 0.15 2.06 2.27 44.99 0.10 2.17 16 3 H 0.08 1.37 7.51 -2.39 -0.02 1.35 16 4 N -0.68 -11.83 4.95 -443.95 -2.20 -14.03 16 5 C 0.52 12.58 7.85 87.24 0.68 13.26 16 6 O -0.54 -15.26 16.15 -3.31 -0.05 -15.31 16 7 C 0.51 14.41 7.62 87.24 0.66 15.08 16 8 O -0.51 -15.99 14.18 -3.33 -0.05 -16.03 16 9 N -0.64 -19.73 5.32 -304.90 -1.62 -21.35 16 10 C 0.18 6.62 6.27 38.20 0.24 6.86 16 11 C -0.19 -6.74 8.65 22.43 0.19 -6.55 16 12 C -0.05 -1.63 10.03 22.23 0.22 -1.40 16 13 C -0.21 -8.62 9.99 22.42 0.22 -8.40 16 14 C 0.13 6.62 6.64 22.56 0.15 6.77 16 15 O -0.22 -13.23 9.76 -22.82 -0.22 -13.45 16 16 C -0.41 -23.80 9.44 67.92 0.64 -23.16 16 17 H 0.10 5.26 5.30 -2.91 -0.02 5.24 16 18 C -0.02 -1.12 5.49 84.83 0.47 -0.65 16 19 N -0.92 -55.64 13.67 21.61 0.30 -55.34 16 20 Si 1.02 42.70 29.55 68.60 2.03 44.73 16 21 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 22 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 23 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 24 C -0.26 -11.27 9.05 22.52 0.20 -11.07 16 25 C -0.12 -1.06 3.17 -10.27 -0.03 -1.09 16 26 C -0.13 -0.94 7.49 31.18 0.23 -0.71 16 27 C -0.14 -1.11 8.09 31.18 0.25 -0.86 16 28 C -0.14 -1.49 7.53 31.13 0.23 -1.25 16 29 H 0.09 0.84 8.06 -2.39 -0.02 0.82 16 30 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.78 8.14 -2.38 -0.02 0.77 16 32 H 0.42 6.31 8.07 -92.71 -0.75 5.56 16 33 H 0.43 12.01 8.30 -92.71 -0.77 11.24 16 34 H 0.14 4.34 6.44 -2.91 -0.02 4.32 16 35 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 36 H 0.12 4.99 8.06 -2.91 -0.02 4.96 16 37 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 38 H 0.13 5.58 5.71 -2.91 -0.02 5.56 16 39 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.08 0.67 8.05 -2.39 -0.02 0.65 16 41 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 42 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.07 0.92 8.10 -2.39 -0.02 0.90 16 Total: -1.00 -71.85 380.86 2.86 -69.00 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: -0.48 Total: 34.25 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 5.16 Total: -12.44 kcal Atomic # 7 Polarization: -87.20 SS G_CDS: -3.53 Total: -90.73 kcal Atomic # 8 Polarization: -44.47 SS G_CDS: -0.32 Total: -44.80 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -71.85 2.86 -69.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756805321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.474 kcal (2) G-P(sol) polarization free energy of solvation -71.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds