Wall clock time and date at job start Tue Mar 31 2020 16:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 119.99888 * 2 1 4 4 O 1.42904 * 109.47453 * 134.99856 * 3 2 1 5 5 C 1.35633 * 116.99932 * 179.97438 * 4 3 2 6 6 C 1.39356 * 120.54761 * 0.27392 * 5 4 3 7 7 C 1.38282 * 118.44331 * 180.26236 * 6 5 4 8 8 C 1.38804 * 119.44980 * 359.72975 * 7 6 5 9 9 N 1.31346 * 121.07577 * 359.97438 * 8 7 6 10 10 C 1.32896 * 121.69268 * 0.02562 * 9 8 7 11 11 C 1.47719 * 119.78540 * 180.02562 * 10 9 8 12 12 O 1.21477 * 119.99501 * 179.97438 * 11 10 9 13 13 O 1.34724 * 119.99909 * 359.97438 * 11 10 9 14 14 C 1.45201 * 116.99673 * 180.02562 * 13 11 10 15 15 C 1.53071 * 109.45280 * 89.78708 * 14 13 11 16 16 C 1.53201 * 109.29371 * 181.24320 * 15 14 13 17 17 N 1.46928 * 108.89275 * 305.57634 * 16 15 14 18 18 C 1.36934 * 120.63265 * 233.51651 * 17 16 15 19 19 H 1.07997 * 119.99862 * 151.82898 * 18 17 16 20 20 C 1.38806 * 120.00015 * 331.83027 * 18 17 16 21 21 N 1.31624 * 120.00191 * 343.08772 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 163.08448 * 20 18 17 23 23 H 1.48503 * 109.47142 * 60.00161 * 22 20 18 24 24 H 1.48498 * 109.47084 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47267 * 300.00095 * 22 20 18 26 26 C 1.46932 * 118.73342 * 53.53882 * 17 16 15 27 27 C 1.53045 * 109.45767 * 209.99934 * 14 13 11 28 28 H 1.08006 * 120.00218 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00018 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.00066 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47541 * 14.99741 * 3 2 1 32 32 H 1.09008 * 109.47039 * 254.99917 * 3 2 1 33 33 H 1.08003 * 120.77761 * 359.96318 * 6 5 4 34 34 H 1.07995 * 120.27820 * 179.70452 * 7 6 5 35 35 H 1.08001 * 119.45977 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.45728 * 329.97010 * 14 13 11 37 37 H 1.09002 * 109.39343 * 61.36562 * 15 14 13 38 38 H 1.09003 * 109.62467 * 301.25789 * 15 14 13 39 39 H 1.09000 * 109.58250 * 185.72113 * 16 15 14 40 40 H 1.08995 * 109.58477 * 65.43833 * 16 15 14 41 41 H 0.96995 * 120.00379 * 180.02562 * 21 20 18 42 42 H 1.08996 * 109.59017 * 66.18099 * 26 17 16 43 43 H 1.09009 * 109.58200 * 186.46074 * 26 17 16 44 44 H 1.09002 * 109.49555 * 58.66178 * 27 14 13 45 45 H 1.08999 * 109.49562 * 298.56681 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9081 2.3429 1.0779 6 6 3.6628 3.4768 0.3059 7 6 4.4899 4.5735 0.4649 8 6 5.5283 4.5175 1.3843 9 7 5.7375 3.4401 2.1059 10 6 4.9700 2.3615 1.9890 11 6 5.2431 1.1727 2.8222 12 8 4.5436 0.1849 2.7187 13 8 6.2678 1.1841 3.6968 14 6 6.4776 -0.0191 4.4820 15 6 7.4257 -0.9583 3.7323 16 6 7.6199 -2.2395 4.5495 17 7 8.0680 -1.8783 5.9014 18 6 9.2033 -2.4310 6.4311 19 1 9.7778 -1.8854 7.1649 20 6 9.6157 -3.6926 6.0248 21 7 8.7744 -4.4917 5.4033 22 14 11.3648 -4.2565 6.3600 23 1 11.6145 -4.2516 7.8238 24 1 11.5519 -5.6310 5.8300 25 1 12.3186 -3.3349 5.6920 26 6 7.2744 -0.9129 6.6742 27 6 7.0868 0.3550 5.8352 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3855 2.1161 0.2659 32 1 2.4755 1.4867 -0.9927 33 1 2.8487 3.4968 -0.4036 34 1 4.3296 5.4660 -0.1216 35 1 6.1741 5.3741 1.5090 36 1 5.5228 -0.5207 4.6398 37 1 8.3882 -0.4658 3.5937 38 1 7.0009 -1.2078 2.7600 39 1 8.3714 -2.8676 4.0711 40 1 6.6759 -2.7809 4.6099 41 1 9.0625 -5.3734 5.1198 42 1 6.3009 -1.3440 6.9077 43 1 7.7968 -0.6677 7.5990 44 1 6.4198 1.0413 6.3572 45 1 8.0531 0.8344 5.6791 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775257634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:59 Heat of formation + Delta-G solvation = -35.239639 kcal Electronic energy + Delta-G solvation = -28230.673647 eV Core-core repulsion = 24215.429197 eV Total energy + Delta-G solvation = -4015.244450 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.23027 -39.75785 -38.68459 -37.28379 -35.62602 -34.49140 -32.90967 -32.48142 -30.96891 -30.16204 -29.60013 -27.17321 -25.77985 -24.68659 -23.29157 -22.34125 -22.11387 -20.96524 -20.23430 -19.24063 -18.62325 -17.97123 -17.35559 -16.82566 -16.61589 -16.23561 -15.60827 -15.33453 -15.14888 -14.77836 -14.49806 -14.09611 -13.89023 -13.53199 -13.46102 -13.28430 -13.12994 -12.82296 -12.62898 -12.41875 -12.32511 -11.95847 -11.45298 -11.42129 -11.12279 -11.08154 -10.68045 -10.60110 -10.41941 -10.24116 -10.22441 -10.13528 -10.04032 -9.84636 -9.82256 -9.58013 -9.30075 -8.82718 -8.42559 -6.66352 -5.75578 -3.18542 0.30423 0.86310 1.65616 2.54508 2.75847 2.90319 3.42187 3.47608 3.49280 3.57771 4.04286 4.14345 4.32307 4.42427 4.52976 4.59149 4.61814 4.71889 4.85218 5.00930 5.12315 5.34951 5.42234 5.44522 5.49032 5.55152 5.55261 5.62984 5.84351 5.95031 6.12400 6.16906 6.21258 6.30593 6.38095 6.56192 6.61191 6.68984 6.78511 6.82465 6.95165 7.03934 7.39097 7.47387 7.68477 7.82928 8.13513 8.48036 9.23640 9.86751 10.43705 11.33374 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015755 B = 0.002687 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.817231 B =10417.705418 C =11524.177959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.152 4.152 3 C 0.079 3.921 4 O -0.268 6.268 5 C 0.143 3.857 6 C -0.179 4.179 7 C -0.102 4.102 8 C 0.055 3.945 9 N -0.393 5.393 10 C 0.063 3.937 11 C 0.515 3.485 12 O -0.481 6.481 13 O -0.335 6.335 14 C 0.097 3.903 15 C -0.153 4.153 16 C 0.176 3.824 17 N -0.592 5.592 18 C -0.254 4.254 19 H 0.067 0.933 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.904 3.096 23 H -0.282 1.282 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.149 3.851 27 C -0.126 4.126 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.125 0.875 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.168 0.832 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.093 0.907 40 H 0.022 0.978 41 H 0.255 0.745 42 H 0.021 0.979 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.975 18.588 -13.921 27.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.004 3.996 4 O -0.178 6.178 5 C 0.092 3.908 6 C -0.205 4.205 7 C -0.122 4.122 8 C -0.106 4.106 9 N -0.104 5.104 10 C -0.074 4.074 11 C 0.357 3.643 12 O -0.367 6.367 13 O -0.251 6.251 14 C 0.043 3.957 15 C -0.193 4.193 16 C 0.050 3.950 17 N -0.315 5.315 18 C -0.384 4.384 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.734 3.266 23 H -0.208 1.208 24 H -0.217 1.217 25 H -0.210 1.210 26 C 0.022 3.978 27 C -0.166 4.166 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.143 0.857 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.166 0.834 34 H 0.163 0.837 35 H 0.185 0.815 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.040 0.960 41 H 0.065 0.935 42 H 0.039 0.961 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.457 17.776 -13.241 26.464 hybrid contribution 0.013 -0.169 -0.785 0.803 sum -14.444 17.607 -14.026 26.746 Atomic orbital electron populations 1.23870 0.95302 1.02580 0.99060 1.22642 0.95630 0.97792 1.00940 1.22019 0.87904 0.97585 0.92111 1.86450 1.40846 1.33305 1.57186 1.19971 0.90412 0.87118 0.93275 1.21722 1.03190 0.93225 1.02404 1.22298 0.94071 0.98510 0.97278 1.22842 0.97543 0.96415 0.93813 1.67793 1.23592 0.98367 1.20641 1.19704 0.94832 0.94064 0.98842 1.20358 0.79075 0.85808 0.79069 1.90896 1.47688 1.32997 1.65158 1.86690 1.46817 1.43007 1.48606 1.22966 0.99702 0.82458 0.90564 1.22669 0.98658 0.98994 0.98938 1.20754 0.99195 0.90809 0.84291 1.44113 1.26857 1.48804 1.11741 1.19149 0.99290 0.97124 1.22817 0.91551 1.25070 0.98306 0.95276 1.00970 1.70022 1.33140 1.07925 1.43606 0.86347 0.84802 0.77451 0.78026 1.20845 1.21652 1.20989 1.20892 0.94991 0.88337 0.93602 1.22208 1.00845 1.00160 0.93355 0.88374 0.87222 0.85713 0.91231 0.90711 0.83429 0.83684 0.81465 0.90401 0.91685 0.92807 0.88933 0.95984 0.93520 0.96130 0.91821 0.92260 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 14.31 29.01 0.42 -0.75 16 2 C -0.15 -1.32 9.89 -36.03 -0.36 -1.68 16 3 C 0.08 0.66 5.17 36.00 0.19 0.85 16 4 O -0.27 -3.52 8.18 -40.55 -0.33 -3.85 16 5 C 0.14 1.78 6.71 -38.53 -0.26 1.52 16 6 C -0.18 -1.45 9.13 -39.15 -0.36 -1.81 16 7 C -0.10 -0.69 10.10 -39.36 -0.40 -1.09 16 8 C 0.06 0.51 11.17 -17.55 -0.20 0.31 16 9 N -0.39 -5.44 10.11 -9.72 -0.10 -5.54 16 10 C 0.06 0.95 6.76 -82.90 -0.56 0.39 16 11 C 0.52 9.56 7.91 34.60 0.27 9.84 16 12 O -0.48 -9.82 14.40 -26.59 -0.38 -10.20 16 13 O -0.34 -6.51 9.70 -40.56 -0.39 -6.91 16 14 C 0.10 1.97 2.42 -26.67 -0.06 1.90 16 15 C -0.15 -3.35 5.73 -26.59 -0.15 -3.50 16 16 C 0.18 4.45 5.30 -3.71 -0.02 4.43 16 17 N -0.59 -15.44 3.00 -172.31 -0.52 -15.96 16 18 C -0.25 -7.13 9.58 -15.06 -0.14 -7.27 16 19 H 0.07 1.81 7.88 -52.49 -0.41 1.39 16 20 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 21 N -0.90 -26.78 11.20 55.49 0.62 -26.16 16 22 Si 0.90 22.06 29.59 -169.99 -5.03 17.03 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 C 0.15 3.24 6.52 -3.71 -0.02 3.22 16 27 C -0.13 -2.44 5.75 -26.61 -0.15 -2.59 16 28 H 0.10 0.51 7.90 -52.48 -0.41 0.10 16 29 H 0.11 0.65 8.06 -52.49 -0.42 0.22 16 30 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 31 H 0.07 0.44 7.41 -51.93 -0.38 0.05 16 32 H 0.07 0.47 7.71 -51.92 -0.40 0.07 16 33 H 0.15 0.72 6.46 -52.48 -0.34 0.38 16 34 H 0.15 0.44 8.06 -52.49 -0.42 0.01 16 35 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.08 1.65 7.16 -51.93 -0.37 1.28 16 37 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.09 2.58 6.06 -51.93 -0.31 2.26 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 1.32 7.93 -51.92 -0.41 0.91 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 376.75 15.07 5.68 5.68 Total: -1.00 -34.43 376.75 -8.76 -43.20 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.41 Total: -1.05 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -1.89 Total: 3.75 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.01 Total: -47.65 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -1.11 Total: -20.96 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.43 -8.76 -43.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775257634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.955 kcal (2) G-P(sol) polarization free energy of solvation -34.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds