Wall clock time and date at job start Tue Mar 31 2020 16:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 119.99888 * 2 1 4 4 O 1.42904 * 109.47453 * 134.99856 * 3 2 1 5 5 C 1.35633 * 116.99932 * 179.97438 * 4 3 2 6 6 C 1.39356 * 120.54761 * 0.27392 * 5 4 3 7 7 C 1.38282 * 118.44331 * 180.26236 * 6 5 4 8 8 C 1.38804 * 119.44980 * 359.72975 * 7 6 5 9 9 N 1.31346 * 121.07577 * 359.97438 * 8 7 6 10 10 C 1.32896 * 121.69268 * 0.02562 * 9 8 7 11 11 C 1.47719 * 119.78540 * 180.02562 * 10 9 8 12 12 O 1.21477 * 119.99501 * 179.97438 * 11 10 9 13 13 O 1.34724 * 119.99909 * 359.97438 * 11 10 9 14 14 C 1.45201 * 116.99673 * 180.02562 * 13 11 10 15 15 C 1.53071 * 109.45280 * 89.78708 * 14 13 11 16 16 C 1.53201 * 109.29371 * 181.24320 * 15 14 13 17 17 N 1.46928 * 108.89275 * 305.57634 * 16 15 14 18 18 C 1.36934 * 120.63265 * 233.51651 * 17 16 15 19 19 H 1.07997 * 119.99862 * 151.82898 * 18 17 16 20 20 C 1.38806 * 120.00015 * 331.83027 * 18 17 16 21 21 N 1.31624 * 120.00191 * 343.08772 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 163.08448 * 20 18 17 23 23 H 1.48503 * 109.47142 * 60.00161 * 22 20 18 24 24 H 1.48498 * 109.47084 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47267 * 300.00095 * 22 20 18 26 26 C 1.46932 * 118.73342 * 53.53882 * 17 16 15 27 27 C 1.53045 * 109.45767 * 209.99934 * 14 13 11 28 28 H 1.08006 * 120.00218 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00018 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.00066 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47541 * 14.99741 * 3 2 1 32 32 H 1.09008 * 109.47039 * 254.99917 * 3 2 1 33 33 H 1.08003 * 120.77761 * 359.96318 * 6 5 4 34 34 H 1.07995 * 120.27820 * 179.70452 * 7 6 5 35 35 H 1.08001 * 119.45977 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.45728 * 329.97010 * 14 13 11 37 37 H 1.09002 * 109.39343 * 61.36562 * 15 14 13 38 38 H 1.09003 * 109.62467 * 301.25789 * 15 14 13 39 39 H 1.09000 * 109.58250 * 185.72113 * 16 15 14 40 40 H 1.08995 * 109.58477 * 65.43833 * 16 15 14 41 41 H 0.96995 * 120.00379 * 180.02562 * 21 20 18 42 42 H 1.08996 * 109.59017 * 66.18099 * 26 17 16 43 43 H 1.09009 * 109.58200 * 186.46074 * 26 17 16 44 44 H 1.09002 * 109.49555 * 58.66178 * 27 14 13 45 45 H 1.08999 * 109.49562 * 298.56681 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9081 2.3429 1.0779 6 6 3.6628 3.4768 0.3059 7 6 4.4899 4.5735 0.4649 8 6 5.5283 4.5175 1.3843 9 7 5.7375 3.4401 2.1059 10 6 4.9700 2.3615 1.9890 11 6 5.2431 1.1727 2.8222 12 8 4.5436 0.1849 2.7187 13 8 6.2678 1.1841 3.6968 14 6 6.4776 -0.0191 4.4820 15 6 7.4257 -0.9583 3.7323 16 6 7.6199 -2.2395 4.5495 17 7 8.0680 -1.8783 5.9014 18 6 9.2033 -2.4310 6.4311 19 1 9.7778 -1.8854 7.1649 20 6 9.6157 -3.6926 6.0248 21 7 8.7744 -4.4917 5.4033 22 14 11.3648 -4.2565 6.3600 23 1 11.6145 -4.2516 7.8238 24 1 11.5519 -5.6310 5.8300 25 1 12.3186 -3.3349 5.6920 26 6 7.2744 -0.9129 6.6742 27 6 7.0868 0.3550 5.8352 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3855 2.1161 0.2659 32 1 2.4755 1.4867 -0.9927 33 1 2.8487 3.4968 -0.4036 34 1 4.3296 5.4660 -0.1216 35 1 6.1741 5.3741 1.5090 36 1 5.5228 -0.5207 4.6398 37 1 8.3882 -0.4658 3.5937 38 1 7.0009 -1.2078 2.7600 39 1 8.3714 -2.8676 4.0711 40 1 6.6759 -2.7809 4.6099 41 1 9.0625 -5.3734 5.1198 42 1 6.3009 -1.3440 6.9077 43 1 7.7968 -0.6677 7.5990 44 1 6.4198 1.0413 6.3572 45 1 8.0531 0.8344 5.6791 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775257634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:58 Heat of formation + Delta-G solvation = -56.014011 kcal Electronic energy + Delta-G solvation = -28231.574491 eV Core-core repulsion = 24215.429197 eV Total energy + Delta-G solvation = -4016.145294 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.17145 -41.09262 -39.47912 -39.02037 -37.24836 -35.12215 -34.62310 -33.50639 -32.15871 -31.74152 -31.46520 -27.80998 -27.36482 -26.11679 -24.17272 -23.99057 -23.77449 -22.28926 -21.06777 -20.91066 -19.51040 -19.06649 -18.89706 -18.17085 -17.67694 -17.34457 -16.89482 -16.79241 -16.20611 -15.92639 -15.66726 -15.44470 -15.20698 -14.97689 -14.87569 -14.52945 -14.35528 -14.19845 -14.10018 -13.72723 -13.29821 -13.12987 -13.06618 -12.84505 -12.61922 -12.59328 -12.39625 -12.14555 -12.04301 -11.98471 -11.88549 -11.74522 -11.47812 -11.09777 -10.91000 -10.77732 -10.56406 -10.46390 -9.64919 -8.77884 -7.90871 -5.37861 -0.55092 0.16911 1.05180 1.37519 1.46631 1.49521 1.53306 1.57161 2.15724 2.50022 2.69966 3.12262 3.25748 3.47439 3.55425 3.60197 3.76120 3.84970 3.86877 3.95331 4.01887 4.04099 4.12852 4.24488 4.34918 4.39052 4.46641 4.53401 4.68347 4.72546 4.83987 4.88217 4.92130 4.93570 4.95981 5.03217 5.21436 5.32208 5.36180 5.44987 5.57036 5.59315 5.63126 5.63450 6.12655 6.34709 6.53861 6.87929 7.08619 7.77865 8.31965 9.16999 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015755 B = 0.002687 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.817231 B =10417.705418 C =11524.177959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.185 4.185 3 C 0.074 3.926 4 O -0.305 6.305 5 C 0.137 3.863 6 C -0.170 4.170 7 C -0.070 4.070 8 C 0.053 3.947 9 N -0.430 5.430 10 C 0.012 3.988 11 C 0.508 3.492 12 O -0.515 6.515 13 O -0.338 6.338 14 C 0.103 3.897 15 C -0.138 4.138 16 C 0.187 3.813 17 N -0.610 5.610 18 C -0.267 4.267 19 H 0.075 0.925 20 C -0.052 4.052 21 N -0.938 5.938 22 Si 0.973 3.027 23 H -0.271 1.271 24 H -0.294 1.294 25 H -0.278 1.278 26 C 0.145 3.855 27 C -0.112 4.112 28 H 0.122 0.878 29 H 0.115 0.885 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.188 0.812 34 H 0.199 0.801 35 H 0.200 0.800 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.063 0.937 40 H -0.003 1.003 41 H 0.251 0.749 42 H 0.018 0.982 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.756 22.505 -15.294 31.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.204 4.204 3 C 0.000 4.000 4 O -0.216 6.216 5 C 0.086 3.914 6 C -0.196 4.196 7 C -0.090 4.090 8 C -0.110 4.110 9 N -0.142 5.142 10 C -0.122 4.122 11 C 0.353 3.647 12 O -0.404 6.404 13 O -0.254 6.254 14 C 0.048 3.952 15 C -0.177 4.177 16 C 0.061 3.939 17 N -0.334 5.334 18 C -0.397 4.397 19 H 0.092 0.908 20 C -0.248 4.248 21 N -0.583 5.583 22 Si 0.801 3.199 23 H -0.196 1.196 24 H -0.221 1.221 25 H -0.204 1.204 26 C 0.020 3.980 27 C -0.151 4.151 28 H 0.140 0.860 29 H 0.133 0.867 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.205 0.795 34 H 0.216 0.784 35 H 0.217 0.783 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.015 0.985 41 H 0.060 0.940 42 H 0.036 0.964 43 H 0.095 0.905 44 H 0.107 0.893 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.254 21.709 -14.598 30.283 hybrid contribution 0.109 -1.239 -0.470 1.329 sum -15.145 20.471 -15.068 29.588 Atomic orbital electron populations 1.24110 0.94585 1.03985 0.96202 1.22663 0.96501 0.97516 1.03688 1.22308 0.87381 0.97987 0.92313 1.86406 1.42058 1.34484 1.58668 1.20161 0.89646 0.88318 0.93295 1.22218 1.04101 0.91629 1.01631 1.22895 0.91374 0.99425 0.95279 1.23569 0.98539 0.95723 0.93200 1.67657 1.24479 0.99288 1.22750 1.19321 0.97896 0.93814 1.01151 1.21205 0.77977 0.86978 0.78575 1.90859 1.48650 1.34654 1.66224 1.86695 1.47808 1.41797 1.49082 1.22697 0.98448 0.82853 0.91156 1.22414 0.99090 0.97812 0.98430 1.20442 0.96823 0.91769 0.84901 1.44363 1.27252 1.49479 1.12272 1.19545 1.00104 0.97316 1.22713 0.90784 1.25912 1.02142 0.95476 1.01223 1.70191 1.34995 1.08104 1.45046 0.85258 0.79875 0.76537 0.78279 1.19648 1.22068 1.20364 1.21049 0.94399 0.88371 0.94197 1.22029 1.01470 0.99160 0.92457 0.86024 0.86697 0.88198 0.88536 0.88632 0.79508 0.78352 0.78289 0.91864 0.91816 0.93029 0.91857 0.98489 0.93985 0.96357 0.90493 0.89264 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 14.31 67.78 0.97 -0.89 16 2 C -0.19 -3.24 9.89 25.65 0.25 -2.99 16 3 C 0.07 1.13 5.17 71.23 0.37 1.50 16 4 O -0.31 -8.10 8.18 -68.46 -0.56 -8.66 16 5 C 0.14 3.27 6.71 22.95 0.15 3.43 16 6 C -0.17 -2.07 9.13 22.55 0.21 -1.86 16 7 C -0.07 -0.59 10.10 22.42 0.23 -0.36 16 8 C 0.05 0.80 11.17 84.90 0.95 1.75 16 9 N -0.43 -11.55 10.11 -184.66 -1.87 -13.42 16 10 C 0.01 0.36 6.76 41.90 0.28 0.64 16 11 C 0.51 19.90 7.91 70.33 0.56 20.46 16 12 O -0.52 -22.58 14.40 26.93 0.39 -22.20 16 13 O -0.34 -13.61 9.70 -56.34 -0.55 -14.15 16 14 C 0.10 4.34 2.42 30.63 0.07 4.41 16 15 C -0.14 -6.35 5.73 30.69 0.18 -6.18 16 16 C 0.19 10.03 5.30 86.37 0.46 10.49 16 17 N -0.61 -32.72 3.00 -699.07 -2.09 -34.81 16 18 C -0.27 -15.20 9.58 84.03 0.81 -14.40 16 19 H 0.07 4.02 7.88 -2.91 -0.02 4.00 16 20 C -0.05 -3.02 4.92 84.86 0.42 -2.60 16 21 N -0.94 -57.74 11.20 21.65 0.24 -57.50 16 22 Si 0.97 46.07 29.59 68.60 2.03 48.10 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 25 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 26 C 0.15 6.41 6.52 86.36 0.56 6.97 16 27 C -0.11 -4.31 5.75 30.67 0.18 -4.14 16 28 H 0.12 0.90 7.90 -2.91 -0.02 0.88 16 29 H 0.11 1.24 8.06 -2.91 -0.02 1.22 16 30 H 0.10 2.17 8.06 -2.91 -0.02 2.14 16 31 H 0.10 0.90 7.41 -2.39 -0.02 0.88 16 32 H 0.10 0.98 7.71 -2.38 -0.02 0.96 16 33 H 0.19 0.73 6.46 -2.91 -0.02 0.71 16 34 H 0.20 -0.39 8.06 -2.91 -0.02 -0.41 16 35 H 0.20 1.51 8.06 -2.91 -0.02 1.49 16 36 H 0.06 2.84 7.16 -2.39 -0.02 2.83 16 37 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 38 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.06 3.75 6.06 -2.39 -0.01 3.73 16 40 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 41 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 42 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 3.16 7.93 -2.38 -0.02 3.14 16 44 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 45 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -81.32 376.75 5.22 -76.10 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 0.99 Total: 10.31 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 6.64 Total: 16.22 kcal Atomic # 7 Polarization: -102.01 SS G_CDS: -3.72 Total: -105.73 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -0.72 Total: -45.01 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -81.32 5.22 -76.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775257634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.088 kcal (2) G-P(sol) polarization free energy of solvation -81.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds