Wall clock time and date at job start Tue Mar 31 2020 18:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34711 * 116.99851 * 2 1 4 4 O 1.21475 * 119.99670 * 359.97438 * 3 2 1 5 5 C 1.47737 * 120.00268 * 180.02562 * 3 2 1 6 6 C 1.39767 * 119.99781 * 359.97438 * 5 3 2 7 7 C 1.38147 * 120.03599 * 179.97438 * 6 5 3 8 8 C 1.37760 * 120.16025 * 359.97438 * 7 6 5 9 9 C 1.39823 * 120.56936 * 0.02562 * 8 7 6 10 10 C 1.39330 * 120.00654 * 179.97438 * 5 3 2 11 11 C 1.47593 * 108.25781 * 179.97438 * 9 8 7 12 12 O 1.21550 * 124.84919 * 179.97438 * 11 9 8 13 13 N 1.34400 * 110.29115 * 0.02562 * 11 9 8 14 14 C 1.46509 * 125.60004 * 179.97438 * 13 11 9 15 15 N 1.46898 * 109.46894 * 90.02510 * 14 13 11 16 16 C 1.46901 * 111.00443 * 81.04432 * 15 14 13 17 17 C 1.46906 * 110.99820 * 204.99744 * 15 14 13 18 18 H 1.08997 * 109.47016 * 54.99923 * 17 15 14 19 19 C 1.53000 * 109.47005 * 294.99916 * 17 15 14 20 20 C 1.50696 * 109.47235 * 174.99804 * 17 15 14 21 21 H 1.08005 * 119.99990 * 0.02562 * 20 17 15 22 22 C 1.37881 * 120.00144 * 179.97438 * 20 17 15 23 23 N 1.31509 * 119.99894 * 359.97438 * 22 20 17 24 24 Si 1.86802 * 120.00087 * 180.02562 * 22 20 17 25 25 H 1.48503 * 109.47005 * 60.00040 * 24 22 20 26 26 H 1.48491 * 109.46949 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46859 * 299.99921 * 24 22 20 28 28 C 1.46713 * 108.79535 * 0.24016 * 13 11 9 29 29 H 1.09001 * 109.47394 * 59.99814 * 1 2 3 30 30 H 1.08996 * 109.47291 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47159 * 300.00180 * 1 2 3 32 32 H 1.08001 * 119.98171 * 359.97438 * 6 5 3 33 33 H 1.08002 * 119.92579 * 180.02562 * 7 6 5 34 34 H 1.08002 * 120.14413 * 0.04685 * 10 5 3 35 35 H 1.08994 * 109.47108 * 330.02401 * 14 13 11 36 36 H 1.08996 * 109.46801 * 210.01806 * 14 13 11 37 37 H 1.09002 * 109.47401 * 183.95136 * 16 15 14 38 38 H 1.09001 * 109.46874 * 63.95149 * 16 15 14 39 39 H 1.09004 * 109.46970 * 303.95282 * 16 15 14 40 40 H 1.09001 * 109.47097 * 179.97438 * 19 17 15 41 41 H 1.08997 * 109.47240 * 299.99870 * 19 17 15 42 42 H 1.08998 * 109.47262 * 60.00073 * 19 17 15 43 43 H 0.97000 * 120.00037 * 179.97438 * 23 22 20 44 44 H 1.08997 * 110.09488 * 118.95765 * 28 13 11 45 45 H 1.08998 * 110.09654 * 240.55910 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4018 2.2190 -0.0005 5 6 3.5389 1.2777 -0.0006 6 6 4.3001 0.1056 -0.0006 7 6 5.6798 0.1770 -0.0016 8 6 6.3093 1.4024 -0.0032 9 6 5.5635 2.5851 -0.0033 10 6 4.1715 2.5191 -0.0011 11 6 6.5024 3.7238 -0.0045 12 8 6.1746 4.8943 -0.0053 13 7 7.7715 3.2815 -0.0058 14 6 8.9690 4.1257 -0.0078 15 7 9.3712 4.4082 1.3765 16 6 10.1315 3.2863 1.9432 17 6 10.1386 5.6583 1.4570 18 1 9.5601 6.4689 1.0139 19 6 11.4566 5.4975 0.6969 20 6 10.4273 5.9784 2.9010 21 1 10.0762 5.3189 3.6810 22 6 11.1405 7.1126 3.2265 23 7 11.5693 7.9148 2.2767 24 14 11.4990 7.5090 5.0164 25 1 12.2869 6.4042 5.6198 26 1 12.2746 8.7726 5.0978 27 1 10.2200 7.6653 5.7545 28 6 7.7608 1.8144 -0.0113 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.8096 -0.8566 0.0003 33 1 6.2663 -0.7298 -0.0021 34 1 3.5856 3.4264 -0.0003 35 1 8.7523 5.0623 -0.5216 36 1 9.7779 3.6075 -0.5226 37 1 10.3564 3.4916 2.9899 38 1 11.0621 3.1615 1.3895 39 1 9.5404 2.3734 1.8709 40 1 12.0258 6.4252 0.7562 41 1 12.0350 4.6869 1.1400 42 1 11.2478 5.2660 -0.3476 43 1 12.0707 8.7130 2.5057 44 1 8.2539 1.4397 -0.9082 45 1 8.2609 1.4329 0.8788 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776761101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:14 Heat of formation + Delta-G solvation = -53.404727 kcal Electronic energy + Delta-G solvation = -28011.062003 eV Core-core repulsion = 23995.029855 eV Total energy + Delta-G solvation = -4016.032147 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.31656 -40.51842 -38.23248 -37.12108 -36.75959 -35.65537 -32.87555 -31.65756 -31.36634 -28.84804 -28.38068 -27.21486 -26.47059 -25.21030 -24.48859 -23.24072 -22.51423 -21.08135 -20.08266 -19.28516 -18.09311 -17.35641 -16.76385 -16.69452 -16.40587 -16.23310 -15.87660 -15.16097 -14.95565 -14.67393 -14.39207 -14.19355 -13.83355 -13.76958 -13.71840 -13.47357 -13.29458 -12.99785 -12.54145 -12.49484 -12.43908 -12.27726 -11.63784 -11.52193 -11.20494 -11.16550 -11.15434 -10.88846 -10.85550 -10.79124 -10.61562 -10.12209 -9.97984 -9.69311 -9.43492 -9.29689 -9.00118 -8.60005 -8.40473 -7.32905 -6.02599 -4.06626 0.21151 0.72281 2.06117 2.26108 2.86808 3.00169 3.32417 3.37055 3.40326 3.65862 3.85342 4.22326 4.36150 4.41044 4.53927 4.73856 4.80219 4.83137 4.95944 4.99117 5.08895 5.15429 5.21943 5.28553 5.30085 5.41256 5.55404 5.70803 5.81569 5.85278 5.92730 6.01055 6.05486 6.21158 6.32415 6.54339 6.66401 6.70355 6.81120 7.01935 7.16665 7.38190 7.38926 7.64809 7.77867 8.04853 8.27083 8.38365 8.51601 8.97514 9.58167 11.04490 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020736 B = 0.002407 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.960695 B =11628.082046 C =12098.358534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.511 3.489 4 O -0.500 6.500 5 C -0.139 4.139 6 C -0.036 4.036 7 C -0.116 4.116 8 C -0.044 4.044 9 C -0.158 4.158 10 C 0.016 3.984 11 C 0.562 3.438 12 O -0.511 6.511 13 N -0.599 5.599 14 C 0.300 3.700 15 N -0.548 5.548 16 C 0.035 3.965 17 C 0.217 3.783 18 H 0.044 0.956 19 C -0.173 4.173 20 C -0.501 4.501 21 H 0.062 0.938 22 C 0.059 3.941 23 N -0.893 5.893 24 Si 0.899 3.101 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.277 1.277 28 C 0.133 3.867 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.147 0.853 33 H 0.141 0.859 34 H 0.147 0.853 35 H 0.094 0.906 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.022 0.978 39 H 0.038 0.962 40 H 0.091 0.909 41 H 0.032 0.968 42 H 0.006 0.994 43 H 0.261 0.739 44 H 0.099 0.901 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.435 -21.763 -7.617 26.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.356 3.644 4 O -0.388 6.388 5 C -0.140 4.140 6 C -0.055 4.055 7 C -0.135 4.135 8 C -0.045 4.045 9 C -0.161 4.161 10 C -0.003 4.003 11 C 0.349 3.651 12 O -0.386 6.386 13 N -0.334 5.334 14 C 0.090 3.910 15 N -0.273 5.273 16 C -0.114 4.114 17 C 0.111 3.889 18 H 0.062 0.938 19 C -0.233 4.233 20 C -0.540 4.540 21 H 0.080 0.920 22 C -0.142 4.142 23 N -0.532 5.532 24 Si 0.727 3.273 25 H -0.204 1.204 26 H -0.214 1.214 27 H -0.202 1.202 28 C 0.009 3.991 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.165 0.835 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.112 0.888 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.040 0.960 39 H 0.057 0.943 40 H 0.110 0.890 41 H 0.051 0.949 42 H 0.025 0.975 43 H 0.071 0.929 44 H 0.117 0.883 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.039 -20.491 -7.361 25.907 hybrid contribution 0.756 0.121 0.591 0.968 sum -13.282 -20.370 -6.770 25.242 Atomic orbital electron populations 1.23306 0.75689 1.03842 1.02854 1.86516 1.23769 1.32494 1.84466 1.21075 0.88894 0.81558 0.72864 1.90876 1.66645 1.35971 1.45349 1.18885 0.89223 0.94530 1.11363 1.21547 0.93306 0.98023 0.92601 1.20279 0.93903 0.96474 1.02797 1.20905 0.96152 0.93716 0.93741 1.20533 0.93672 0.95747 1.06177 1.20896 0.92514 0.97327 0.89561 1.18018 0.82621 0.87662 0.76811 1.90817 1.80403 1.18364 1.48982 1.48219 1.06630 1.05722 1.72835 1.21772 0.83360 0.93657 0.92254 1.62001 1.44176 1.05159 1.16010 1.22310 0.95022 0.92293 1.01729 1.19311 0.88257 0.84554 0.96774 0.93833 1.22462 1.02288 1.03298 0.95213 1.21019 1.33755 1.07881 0.91298 0.92003 1.24920 0.95798 0.96035 0.97492 1.69860 1.37864 1.13721 1.31787 0.86552 0.78338 0.77473 0.84984 1.20392 1.21358 1.20217 1.20643 0.92518 0.82102 1.03792 0.91697 0.87850 0.91668 0.83541 0.84116 0.83513 0.88767 0.92741 0.90551 0.95961 0.94321 0.89023 0.94856 0.97469 0.92863 0.88332 0.88075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.15 9.80 -40.52 -0.40 -3.54 16 3 C 0.51 5.80 7.90 34.61 0.27 6.07 16 4 O -0.50 -7.11 16.12 -19.25 -0.31 -7.42 16 5 C -0.14 -1.50 5.87 -105.04 -0.62 -2.12 16 6 C -0.04 -0.29 9.62 -39.04 -0.38 -0.66 16 7 C -0.12 -0.88 10.01 -39.79 -0.40 -1.28 16 8 C -0.04 -0.46 6.38 -104.11 -0.66 -1.12 16 9 C -0.16 -2.20 6.25 -105.07 -0.66 -2.86 16 10 C 0.02 0.21 9.64 -38.76 -0.37 -0.16 16 11 C 0.56 10.04 7.97 -12.61 -0.10 9.94 16 12 O -0.51 -11.40 17.71 5.32 0.09 -11.30 16 13 N -0.60 -9.40 3.15 -179.61 -0.57 -9.97 16 14 C 0.30 5.31 4.88 -63.31 -0.31 5.00 16 15 N -0.55 -11.52 4.84 -240.19 -1.16 -12.69 16 16 C 0.03 0.63 8.74 60.07 0.53 1.15 16 17 C 0.22 5.38 2.28 -68.86 -0.16 5.22 16 18 H 0.04 1.23 7.93 -51.93 -0.41 0.82 16 19 C -0.17 -3.98 8.34 37.16 0.31 -3.67 16 20 C -0.50 -13.62 7.94 -34.44 -0.27 -13.89 16 21 H 0.06 1.69 6.75 -52.48 -0.35 1.33 16 22 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 23 N -0.89 -25.32 11.32 55.43 0.63 -24.69 16 24 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 C 0.13 1.41 7.11 -4.99 -0.04 1.37 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.15 0.78 7.60 -52.49 -0.40 0.38 16 33 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 34 H 0.15 2.06 7.64 -52.49 -0.40 1.66 16 35 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 36 H 0.05 0.83 7.56 -51.93 -0.39 0.44 16 37 H 0.08 1.52 6.53 -51.93 -0.34 1.18 16 38 H 0.02 0.39 6.27 -51.93 -0.33 0.06 16 39 H 0.04 0.57 5.94 -51.93 -0.31 0.26 16 40 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 41 H 0.03 0.73 6.39 -51.93 -0.33 0.40 16 42 H 0.01 0.13 7.13 -51.93 -0.37 -0.24 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.10 0.99 6.31 -51.93 -0.33 0.66 16 LS Contribution 371.22 15.07 5.59 5.59 Total: -1.00 -33.98 371.22 -8.94 -42.92 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.92 Total: -1.13 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -1.88 Total: 5.81 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: -1.10 Total: -47.34 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.61 Total: -22.26 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.98 -8.94 -42.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776761101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.482 kcal (2) G-P(sol) polarization free energy of solvation -33.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds