Wall clock time and date at job start Tue Mar 31 2020 18:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34711 * 116.99851 * 2 1 4 4 O 1.21475 * 119.99670 * 359.97438 * 3 2 1 5 5 C 1.47737 * 120.00268 * 180.02562 * 3 2 1 6 6 C 1.39767 * 119.99781 * 359.97438 * 5 3 2 7 7 C 1.38147 * 120.03599 * 179.97438 * 6 5 3 8 8 C 1.37760 * 120.16025 * 359.97438 * 7 6 5 9 9 C 1.39823 * 120.56936 * 0.02562 * 8 7 6 10 10 C 1.39330 * 120.00654 * 179.97438 * 5 3 2 11 11 C 1.47593 * 108.25781 * 179.97438 * 9 8 7 12 12 O 1.21550 * 124.84919 * 179.97438 * 11 9 8 13 13 N 1.34400 * 110.29115 * 0.02562 * 11 9 8 14 14 C 1.46509 * 125.60004 * 179.97438 * 13 11 9 15 15 N 1.46898 * 109.46894 * 90.02510 * 14 13 11 16 16 C 1.46901 * 111.00443 * 81.04432 * 15 14 13 17 17 C 1.46906 * 110.99820 * 204.99744 * 15 14 13 18 18 H 1.08997 * 109.47016 * 54.99923 * 17 15 14 19 19 C 1.53000 * 109.47005 * 294.99916 * 17 15 14 20 20 C 1.50696 * 109.47235 * 174.99804 * 17 15 14 21 21 H 1.08005 * 119.99990 * 0.02562 * 20 17 15 22 22 C 1.37881 * 120.00144 * 179.97438 * 20 17 15 23 23 N 1.31509 * 119.99894 * 359.97438 * 22 20 17 24 24 Si 1.86802 * 120.00087 * 180.02562 * 22 20 17 25 25 H 1.48503 * 109.47005 * 60.00040 * 24 22 20 26 26 H 1.48491 * 109.46949 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46859 * 299.99921 * 24 22 20 28 28 C 1.46713 * 108.79535 * 0.24016 * 13 11 9 29 29 H 1.09001 * 109.47394 * 59.99814 * 1 2 3 30 30 H 1.08996 * 109.47291 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47159 * 300.00180 * 1 2 3 32 32 H 1.08001 * 119.98171 * 359.97438 * 6 5 3 33 33 H 1.08002 * 119.92579 * 180.02562 * 7 6 5 34 34 H 1.08002 * 120.14413 * 0.04685 * 10 5 3 35 35 H 1.08994 * 109.47108 * 330.02401 * 14 13 11 36 36 H 1.08996 * 109.46801 * 210.01806 * 14 13 11 37 37 H 1.09002 * 109.47401 * 183.95136 * 16 15 14 38 38 H 1.09001 * 109.46874 * 63.95149 * 16 15 14 39 39 H 1.09004 * 109.46970 * 303.95282 * 16 15 14 40 40 H 1.09001 * 109.47097 * 179.97438 * 19 17 15 41 41 H 1.08997 * 109.47240 * 299.99870 * 19 17 15 42 42 H 1.08998 * 109.47262 * 60.00073 * 19 17 15 43 43 H 0.97000 * 120.00037 * 179.97438 * 23 22 20 44 44 H 1.08997 * 110.09488 * 118.95765 * 28 13 11 45 45 H 1.08998 * 110.09654 * 240.55910 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4018 2.2190 -0.0005 5 6 3.5389 1.2777 -0.0006 6 6 4.3001 0.1056 -0.0006 7 6 5.6798 0.1770 -0.0016 8 6 6.3093 1.4024 -0.0032 9 6 5.5635 2.5851 -0.0033 10 6 4.1715 2.5191 -0.0011 11 6 6.5024 3.7238 -0.0045 12 8 6.1746 4.8943 -0.0053 13 7 7.7715 3.2815 -0.0058 14 6 8.9690 4.1257 -0.0078 15 7 9.3712 4.4082 1.3765 16 6 10.1315 3.2863 1.9432 17 6 10.1386 5.6583 1.4570 18 1 9.5601 6.4689 1.0139 19 6 11.4566 5.4975 0.6969 20 6 10.4273 5.9784 2.9010 21 1 10.0762 5.3189 3.6810 22 6 11.1405 7.1126 3.2265 23 7 11.5693 7.9148 2.2767 24 14 11.4990 7.5090 5.0164 25 1 12.2869 6.4042 5.6198 26 1 12.2746 8.7726 5.0978 27 1 10.2200 7.6653 5.7545 28 6 7.7608 1.8144 -0.0113 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.8096 -0.8566 0.0003 33 1 6.2663 -0.7298 -0.0021 34 1 3.5856 3.4264 -0.0003 35 1 8.7523 5.0623 -0.5216 36 1 9.7779 3.6075 -0.5226 37 1 10.3564 3.4916 2.9899 38 1 11.0621 3.1615 1.3895 39 1 9.5404 2.3734 1.8709 40 1 12.0258 6.4252 0.7562 41 1 12.0350 4.6869 1.1400 42 1 11.2478 5.2660 -0.3476 43 1 12.0707 8.7130 2.5057 44 1 8.2539 1.4397 -0.9082 45 1 8.2609 1.4329 0.8788 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776761101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:13 Heat of formation + Delta-G solvation = -76.837074 kcal Electronic energy + Delta-G solvation = -28012.078106 eV Core-core repulsion = 23995.029855 eV Total energy + Delta-G solvation = -4017.048250 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.31614 -41.43334 -39.37296 -38.69535 -37.60967 -36.92869 -34.74705 -32.78943 -32.28495 -30.51166 -29.33217 -28.13195 -27.70005 -27.15204 -25.83030 -24.20441 -23.64701 -21.90154 -21.50597 -20.78601 -19.06410 -18.40079 -18.11643 -17.78231 -17.52121 -17.42735 -17.16090 -16.72213 -16.05390 -15.85018 -15.70580 -15.41645 -15.18417 -14.82538 -14.58476 -14.51041 -14.47013 -14.38958 -14.20521 -13.39133 -13.37954 -13.13283 -13.07745 -12.94983 -12.84552 -12.65700 -12.54634 -12.52190 -12.33619 -12.03044 -11.85755 -11.85338 -11.74427 -11.06444 -10.99431 -10.51564 -10.36110 -10.17001 -9.78297 -8.94670 -8.12565 -6.23905 -0.60013 -0.18637 1.22734 1.40232 1.43348 1.48446 1.50449 1.73597 1.89386 2.41562 2.67222 2.98338 3.16442 3.27930 3.46681 3.63197 3.73408 3.99880 4.01181 4.21666 4.26958 4.32153 4.34407 4.37773 4.41843 4.55950 4.66155 4.70783 4.72311 4.76846 4.85237 4.86867 4.92300 5.03819 5.07408 5.15034 5.21382 5.23190 5.49188 5.54354 5.60691 5.67572 5.78900 5.94926 6.17840 6.46194 6.57328 6.64101 6.87999 7.06391 7.45056 8.93135 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020736 B = 0.002407 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.960695 B =11628.082046 C =12098.358534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.346 6.346 3 C 0.513 3.487 4 O -0.542 6.542 5 C -0.148 4.148 6 C -0.011 4.011 7 C -0.093 4.093 8 C -0.029 4.029 9 C -0.191 4.191 10 C -0.002 4.002 11 C 0.544 3.456 12 O -0.582 6.582 13 N -0.599 5.599 14 C 0.305 3.695 15 N -0.570 5.570 16 C 0.040 3.960 17 C 0.223 3.777 18 H -0.008 1.008 19 C -0.156 4.156 20 C -0.516 4.516 21 H 0.056 0.944 22 C 0.010 3.990 23 N -0.919 5.919 24 Si 0.960 3.040 25 H -0.264 1.264 26 H -0.284 1.284 27 H -0.281 1.281 28 C 0.128 3.872 29 H 0.061 0.939 30 H 0.142 0.858 31 H 0.059 0.941 32 H 0.186 0.814 33 H 0.194 0.806 34 H 0.115 0.885 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.052 0.948 38 H 0.034 0.966 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.045 0.955 42 H 0.031 0.969 43 H 0.261 0.739 44 H 0.141 0.859 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.760 -27.324 -7.481 31.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.262 6.262 3 C 0.360 3.640 4 O -0.433 6.433 5 C -0.149 4.149 6 C -0.029 4.029 7 C -0.111 4.111 8 C -0.030 4.030 9 C -0.194 4.194 10 C -0.022 4.022 11 C 0.334 3.666 12 O -0.463 6.463 13 N -0.331 5.331 14 C 0.095 3.905 15 N -0.296 5.296 16 C -0.108 4.108 17 C 0.116 3.884 18 H 0.010 0.990 19 C -0.216 4.216 20 C -0.554 4.554 21 H 0.074 0.926 22 C -0.189 4.189 23 N -0.559 5.559 24 Si 0.786 3.214 25 H -0.189 1.189 26 H -0.210 1.210 27 H -0.206 1.206 28 C 0.008 3.992 29 H 0.080 0.920 30 H 0.160 0.840 31 H 0.078 0.922 32 H 0.203 0.797 33 H 0.212 0.788 34 H 0.134 0.866 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.050 0.950 43 H 0.071 0.929 44 H 0.159 0.841 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.351 -26.148 -7.233 30.237 hybrid contribution 0.422 1.724 0.502 1.844 sum -12.929 -24.424 -6.731 28.443 Atomic orbital electron populations 1.23635 0.74077 1.06221 1.02523 1.86500 1.25269 1.30679 1.83726 1.21253 0.89184 0.81730 0.71858 1.90862 1.67548 1.37502 1.47414 1.18922 0.89246 0.94668 1.12055 1.22031 0.93531 0.98068 0.89314 1.20805 0.93788 0.96781 0.99712 1.21082 0.95482 0.93432 0.93009 1.20186 0.93670 0.95585 1.09993 1.20739 0.92392 0.97669 0.91354 1.18837 0.84186 0.87848 0.75756 1.90757 1.81669 1.21405 1.52471 1.48235 1.05173 1.08270 1.71469 1.21601 0.84859 0.93526 0.90554 1.61808 1.44480 1.04847 1.18461 1.22312 0.95930 0.92383 1.00142 1.18972 0.88709 0.85271 0.95448 0.99012 1.22207 1.00736 1.02082 0.96565 1.21312 1.33587 1.08048 0.92466 0.92592 1.25710 0.95784 0.95980 1.01432 1.70004 1.38375 1.13986 1.33549 0.85579 0.77964 0.77647 0.80219 1.18905 1.20957 1.20628 1.21057 0.93128 0.78376 1.06672 0.92014 0.84020 0.92189 0.79686 0.78840 0.86646 0.92273 0.89017 0.92874 0.94808 0.90416 0.92097 0.93645 0.95018 0.92941 0.84118 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.35 -5.28 9.80 -56.21 -0.55 -5.83 16 3 C 0.51 11.36 7.90 70.33 0.56 11.92 16 4 O -0.54 -16.19 16.12 19.92 0.32 -15.87 16 5 C -0.15 -3.00 5.87 -20.13 -0.12 -3.12 16 6 C -0.01 -0.13 9.62 22.62 0.22 0.09 16 7 C -0.09 -0.83 10.01 22.13 0.22 -0.61 16 8 C -0.03 -0.49 6.38 -19.54 -0.12 -0.62 16 9 C -0.19 -5.38 6.25 -20.16 -0.13 -5.51 16 10 C 0.00 -0.05 9.64 22.80 0.22 0.17 16 11 C 0.54 20.54 7.97 86.77 0.69 21.23 16 12 O -0.58 -28.83 17.71 -3.87 -0.07 -28.89 16 13 N -0.60 -18.38 3.15 -840.67 -2.65 -21.03 16 14 C 0.31 10.80 4.88 170.80 0.83 11.63 16 15 N -0.57 -24.16 4.84 -913.83 -4.42 -28.58 16 16 C 0.04 1.36 8.74 127.69 1.12 2.47 16 17 C 0.22 11.49 2.28 44.17 0.10 11.59 16 18 H -0.01 -0.49 7.93 -2.39 -0.02 -0.51 16 19 C -0.16 -7.24 8.34 71.98 0.60 -6.64 16 20 C -0.52 -28.84 7.94 25.60 0.20 -28.64 16 21 H 0.06 3.12 6.75 -2.91 -0.02 3.10 16 22 C 0.01 0.54 5.30 84.66 0.45 0.99 16 23 N -0.92 -53.83 11.32 21.45 0.24 -53.59 16 24 Si 0.96 44.65 29.54 68.60 2.03 46.67 16 25 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 27 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 28 C 0.13 2.17 7.11 85.65 0.61 2.78 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.19 0.70 7.60 -2.91 -0.02 0.68 16 33 H 0.19 -0.12 8.06 -2.91 -0.02 -0.15 16 34 H 0.12 3.78 7.64 -2.91 -0.02 3.76 16 35 H 0.06 2.49 7.58 -2.39 -0.02 2.47 16 36 H 0.09 2.56 7.56 -2.39 -0.02 2.54 16 37 H 0.05 2.05 6.53 -2.39 -0.02 2.04 16 38 H 0.03 1.07 6.27 -2.39 -0.01 1.05 16 39 H 0.08 2.00 5.94 -2.38 -0.01 1.98 16 40 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 41 H 0.04 1.95 6.39 -2.39 -0.02 1.93 16 42 H 0.03 1.26 7.13 -2.39 -0.02 1.24 16 43 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 44 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.12 1.66 6.31 -2.39 -0.02 1.64 16 Total: -1.00 -84.20 371.22 2.57 -81.64 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 1.02 Total: 6.27 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 6.65 Total: 19.22 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -6.83 Total: -103.20 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: -0.30 Total: -50.59 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -84.20 2.57 -81.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776761101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.800 kcal (2) G-P(sol) polarization free energy of solvation -84.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds