Wall clock time and date at job start Tue Mar 31 2020 17:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.44145 * 2 1 4 4 C 1.54892 * 110.48632 * 237.31283 * 2 1 3 5 5 C 1.54887 * 102.74873 * 203.38143 * 4 2 1 6 6 C 1.54263 * 104.19559 * 37.94952 * 5 4 2 7 7 H 1.08996 * 110.07622 * 95.69265 * 6 5 4 8 8 N 1.46498 * 110.02957 * 217.10479 * 6 5 4 9 9 C 1.34777 * 119.99995 * 272.16032 * 8 6 5 10 10 O 1.21363 * 119.99862 * 0.02562 * 9 8 6 11 11 C 1.49353 * 120.00482 * 180.02562 * 9 8 6 12 12 O 1.21377 * 119.99684 * 0.02562 * 11 9 8 13 13 N 1.34777 * 120.00482 * 180.02562 * 11 9 8 14 14 C 1.39723 * 120.00110 * 174.54905 * 13 11 9 15 15 C 1.39017 * 120.03778 * 145.27829 * 14 13 11 16 16 C 1.38147 * 120.06300 * 180.02562 * 15 14 13 17 17 C 1.38178 * 120.13860 * 359.97438 * 16 15 14 18 18 C 1.38920 * 120.08696 * 359.97438 * 17 16 15 19 19 O 1.35749 * 120.03134 * 179.97438 * 18 17 16 20 20 C 1.34826 * 117.00279 * 5.63926 * 19 18 17 21 21 H 1.08007 * 120.00036 * 5.35861 * 20 19 18 22 22 C 1.38649 * 120.00208 * 185.35324 * 20 19 18 23 23 N 1.31554 * 120.00196 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99940 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47305 * 60.00214 * 24 22 20 26 26 H 1.48511 * 109.46912 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47079 * 299.99872 * 24 22 20 28 28 C 1.38756 * 119.93593 * 0.02562 * 18 17 16 29 29 C 1.53876 * 106.59772 * 336.38486 * 6 5 4 30 30 H 1.08999 * 109.47160 * 297.46271 * 1 2 3 31 31 H 1.09001 * 109.46637 * 57.45491 * 1 2 3 32 32 H 1.09001 * 109.47495 * 177.45629 * 1 2 3 33 33 H 1.08995 * 110.75756 * 321.70246 * 4 2 1 34 34 H 1.08999 * 110.75138 * 84.88536 * 4 2 1 35 35 H 1.08993 * 110.49186 * 279.26628 * 5 4 2 36 36 H 1.08999 * 110.48355 * 156.62432 * 5 4 2 37 37 H 0.96999 * 120.00219 * 92.16673 * 8 6 5 38 38 H 0.97003 * 119.99882 * 354.55509 * 13 11 9 39 39 H 1.08003 * 119.96962 * 359.97438 * 15 14 13 40 40 H 1.07996 * 119.93069 * 179.69916 * 16 15 14 41 41 H 1.08001 * 119.95333 * 180.02562 * 17 16 15 42 42 H 0.96999 * 120.00459 * 180.02562 * 23 22 20 43 43 H 1.07997 * 120.07337 * 180.02562 * 28 18 17 44 44 H 1.09002 * 110.03132 * 119.28819 * 29 6 5 45 45 H 1.09001 * 110.03191 * 240.72077 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9107 1.0213 0.0000 4 6 2.0721 -0.7836 -1.2212 5 6 3.4907 -1.1990 -0.7584 6 6 3.3164 -1.5398 0.7360 7 1 3.1694 -2.6126 0.8604 8 7 4.4941 -1.1042 1.4906 9 6 5.5529 -1.9277 1.6218 10 8 5.5309 -3.0300 1.1144 11 6 6.7534 -1.4839 2.3915 12 8 6.7753 -0.3817 2.8994 13 7 7.8124 -2.3073 2.5223 14 6 8.9785 -1.8524 3.1434 15 6 9.7402 -2.7219 3.9156 16 6 10.8929 -2.2726 4.5303 17 6 11.2927 -0.9586 4.3794 18 6 10.5367 -0.0849 3.6081 19 8 10.9302 1.2060 3.4610 20 6 12.1222 1.5467 3.9909 21 1 12.7555 0.7887 4.4277 22 6 12.5351 2.8702 3.9750 23 7 11.7636 3.7936 3.4433 24 14 14.1870 3.3421 4.7086 25 1 15.2702 2.6198 3.9945 26 1 14.3911 4.8064 4.5675 27 1 14.2125 2.9756 6.1475 28 6 9.3783 -0.5326 2.9892 29 6 2.0698 -0.7774 1.2182 30 1 -0.3633 0.4739 0.9118 31 1 -0.3632 0.5529 -0.8663 32 1 -0.3634 -1.0266 -0.0456 33 1 1.4580 -1.6618 -1.4202 34 1 2.1221 -0.1417 -2.1007 35 1 4.1898 -0.3720 -0.8821 36 1 3.8315 -2.0739 -1.3120 37 1 4.5119 -0.2231 1.8959 38 1 7.7651 -3.2156 2.1852 39 1 9.4300 -3.7495 4.0359 40 1 11.4804 -2.9487 5.1338 41 1 12.1946 -0.6107 4.8609 42 1 12.0526 4.7195 3.4318 43 1 8.7891 0.1447 2.3888 44 1 1.3174 -1.4804 1.5759 45 1 2.3411 -0.0834 2.0137 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782160267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:01 Heat of formation + Delta-G solvation = -78.206233 kcal Electronic energy + Delta-G solvation = -27381.009563 eV Core-core repulsion = 23363.901942 eV Total energy + Delta-G solvation = -4017.107621 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -40.95739 -39.64651 -38.69874 -38.00039 -36.63077 -34.73365 -33.86967 -32.27388 -30.90663 -29.67723 -28.91661 -28.55416 -25.76494 -25.28740 -24.34890 -22.20022 -21.42958 -20.84389 -20.36385 -20.18420 -18.72952 -18.08364 -17.12680 -17.03585 -16.12408 -15.82825 -15.48901 -15.12528 -15.07243 -15.00850 -14.35829 -14.27400 -14.04278 -13.93337 -13.68224 -13.54193 -13.31233 -12.88032 -12.58216 -12.45767 -12.32735 -11.87665 -11.80473 -11.65037 -11.57294 -11.34303 -11.15629 -11.10140 -10.99503 -10.95497 -10.90087 -10.79944 -10.49279 -9.89279 -9.66723 -9.42698 -9.27009 -8.83617 -7.78839 -7.23855 -6.44437 -4.03815 1.25259 2.10356 2.29524 2.36647 3.13518 3.14102 3.17602 3.24307 3.58469 3.96918 4.12842 4.17886 4.39765 4.45019 4.55487 4.93099 4.95591 5.03772 5.10530 5.10679 5.19932 5.23075 5.26953 5.36470 5.47390 5.55929 5.58382 5.67741 5.77287 5.78326 5.80795 5.86452 6.03651 6.03736 6.13012 6.15895 6.29004 6.54430 6.68304 6.94321 6.99900 7.03964 7.30222 7.41124 7.45503 7.66565 7.76240 7.99631 8.07192 9.00260 9.70268 10.73265 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015940 B = 0.002297 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.204419 B =12185.076986 C =13564.136503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.078 0.922 4 C -0.119 4.119 5 C -0.137 4.137 6 C 0.138 3.862 7 H 0.096 0.904 8 N -0.696 5.696 9 C 0.514 3.486 10 O -0.522 6.522 11 C 0.498 3.502 12 O -0.490 6.490 13 N -0.638 5.638 14 C 0.171 3.829 15 C -0.230 4.230 16 C -0.057 4.057 17 C -0.240 4.240 18 C 0.167 3.833 19 O -0.172 6.172 20 C -0.392 4.392 21 H 0.093 0.907 22 C 0.039 3.961 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.185 4.185 29 C -0.129 4.129 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.414 0.586 38 H 0.417 0.583 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.130 0.870 42 H 0.271 0.729 43 H 0.128 0.872 44 H 0.078 0.922 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.119 -10.659 -5.708 21.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.097 0.903 4 C -0.156 4.156 5 C -0.176 4.176 6 C 0.034 3.966 7 H 0.114 0.886 8 N -0.349 5.349 9 C 0.294 3.706 10 O -0.398 6.398 11 C 0.279 3.721 12 O -0.363 6.363 13 N -0.285 5.285 14 C 0.078 3.922 15 C -0.250 4.250 16 C -0.076 4.076 17 C -0.260 4.260 18 C 0.112 3.888 19 O -0.075 6.075 20 C -0.469 4.469 21 H 0.110 0.890 22 C -0.165 4.165 23 N -0.495 5.495 24 Si 0.766 3.234 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.206 4.206 29 C -0.167 4.167 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.251 0.749 38 H 0.255 0.745 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.147 0.853 42 H 0.081 0.919 43 H 0.145 0.855 44 H 0.097 0.903 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.267 -10.175 -5.884 21.722 hybrid contribution 0.861 0.176 0.474 0.998 sum -17.406 -9.999 -5.411 20.790 Atomic orbital electron populations 1.21807 0.94718 1.01880 1.01809 1.21988 0.95725 0.99535 0.94451 0.90341 1.22552 0.95569 0.99932 0.97587 1.22814 0.97707 1.02200 0.94872 1.21792 0.83582 1.00294 0.90893 0.88637 1.45998 1.15502 1.19592 1.53840 1.20120 0.84229 0.85160 0.81056 1.90747 1.81066 1.20459 1.47485 1.20144 0.84198 0.85828 0.81919 1.90871 1.80682 1.19962 1.44759 1.43033 1.11818 1.16545 1.57067 1.17145 0.85820 0.93557 0.95651 1.20302 0.99762 0.99203 1.05780 1.20528 0.94986 0.94952 0.97139 1.21216 1.03995 0.94237 1.06575 1.19077 0.91827 0.85895 0.91992 1.84001 1.36076 1.20165 1.67245 1.21296 0.92137 0.93890 1.39536 0.89004 1.25308 0.99774 0.94465 0.96970 1.70037 1.36708 1.01678 1.41034 0.85772 0.80219 0.77995 0.79382 1.19466 1.20285 1.19469 1.19969 0.98433 0.95022 1.07219 1.22551 0.96240 0.99466 0.98428 0.92577 0.92553 0.92536 0.91129 0.91176 0.90730 0.90784 0.74875 0.74546 0.87060 0.86790 0.85280 0.91918 0.85460 0.90313 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.12 37.16 0.34 -0.43 16 2 C -0.10 -0.61 3.46 -88.96 -0.31 -0.92 16 3 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.12 -0.77 6.33 -24.74 -0.16 -0.92 16 5 C -0.14 -1.15 6.53 -25.07 -0.16 -1.31 16 6 C 0.14 1.21 3.25 -66.81 -0.22 0.99 16 7 H 0.10 0.91 7.56 -51.93 -0.39 0.51 16 8 N -0.70 -7.48 5.03 -53.19 -0.27 -7.74 16 9 C 0.51 6.90 7.88 -11.63 -0.09 6.81 16 10 O -0.52 -7.61 16.14 5.49 0.09 -7.52 16 11 C 0.50 7.96 7.61 -11.63 -0.09 7.87 16 12 O -0.49 -9.32 14.27 5.47 0.08 -9.24 16 13 N -0.64 -9.98 5.32 -10.31 -0.05 -10.03 16 14 C 0.17 3.22 6.24 -83.78 -0.52 2.70 16 15 C -0.23 -3.95 9.96 -39.33 -0.39 -4.34 16 16 C -0.06 -1.03 10.03 -39.64 -0.40 -1.43 16 17 C -0.24 -5.22 9.13 -39.35 -0.36 -5.58 16 18 C 0.17 4.14 6.64 -39.14 -0.26 3.88 16 19 O -0.17 -5.01 9.75 0.07 0.00 -5.01 16 20 C -0.39 -11.02 9.44 30.88 0.29 -10.72 16 21 H 0.09 2.36 5.29 -52.48 -0.28 2.08 16 22 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 23 N -0.86 -25.46 13.67 55.48 0.76 -24.71 16 24 Si 0.94 20.52 29.55 -169.99 -5.02 15.49 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 27 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 28 C -0.19 -4.20 8.59 -39.19 -0.34 -4.53 16 29 C -0.13 -0.87 6.14 -25.61 -0.16 -1.02 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.28 8.12 -51.93 -0.42 -0.14 16 33 H 0.07 0.42 8.04 -51.93 -0.42 0.00 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.41 4.21 7.79 -40.82 -0.32 3.89 16 38 H 0.42 5.38 8.30 -40.82 -0.34 5.04 16 39 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 40 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.13 2.76 5.70 -52.49 -0.30 2.47 16 42 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.13 3.03 6.53 -52.49 -0.34 2.68 16 44 H 0.08 0.47 7.84 -51.93 -0.41 0.06 16 45 H 0.08 0.51 7.62 -51.93 -0.40 0.11 16 LS Contribution 376.88 15.07 5.68 5.68 Total: -1.00 -32.89 376.88 -7.78 -40.67 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -6.12 Total: 10.36 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -2.92 Total: -7.95 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.44 Total: -42.49 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: 0.17 Total: -21.77 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.89 -7.78 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782160267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.538 kcal (2) G-P(sol) polarization free energy of solvation -32.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds