Wall clock time and date at job start Tue Mar 31 2020 17:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.44145 * 2 1 4 4 C 1.54892 * 110.48632 * 237.31283 * 2 1 3 5 5 C 1.54887 * 102.74873 * 203.38143 * 4 2 1 6 6 C 1.54263 * 104.19559 * 37.94952 * 5 4 2 7 7 H 1.08996 * 110.07622 * 95.69265 * 6 5 4 8 8 N 1.46498 * 110.02957 * 217.10479 * 6 5 4 9 9 C 1.34777 * 119.99995 * 272.16032 * 8 6 5 10 10 O 1.21363 * 119.99862 * 0.02562 * 9 8 6 11 11 C 1.49353 * 120.00482 * 180.02562 * 9 8 6 12 12 O 1.21377 * 119.99684 * 0.02562 * 11 9 8 13 13 N 1.34777 * 120.00482 * 180.02562 * 11 9 8 14 14 C 1.39723 * 120.00110 * 174.54905 * 13 11 9 15 15 C 1.39017 * 120.03778 * 145.27829 * 14 13 11 16 16 C 1.38147 * 120.06300 * 180.02562 * 15 14 13 17 17 C 1.38178 * 120.13860 * 359.97438 * 16 15 14 18 18 C 1.38920 * 120.08696 * 359.97438 * 17 16 15 19 19 O 1.35749 * 120.03134 * 179.97438 * 18 17 16 20 20 C 1.34826 * 117.00279 * 5.63926 * 19 18 17 21 21 H 1.08007 * 120.00036 * 5.35861 * 20 19 18 22 22 C 1.38649 * 120.00208 * 185.35324 * 20 19 18 23 23 N 1.31554 * 120.00196 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99940 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47305 * 60.00214 * 24 22 20 26 26 H 1.48511 * 109.46912 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47079 * 299.99872 * 24 22 20 28 28 C 1.38756 * 119.93593 * 0.02562 * 18 17 16 29 29 C 1.53876 * 106.59772 * 336.38486 * 6 5 4 30 30 H 1.08999 * 109.47160 * 297.46271 * 1 2 3 31 31 H 1.09001 * 109.46637 * 57.45491 * 1 2 3 32 32 H 1.09001 * 109.47495 * 177.45629 * 1 2 3 33 33 H 1.08995 * 110.75756 * 321.70246 * 4 2 1 34 34 H 1.08999 * 110.75138 * 84.88536 * 4 2 1 35 35 H 1.08993 * 110.49186 * 279.26628 * 5 4 2 36 36 H 1.08999 * 110.48355 * 156.62432 * 5 4 2 37 37 H 0.96999 * 120.00219 * 92.16673 * 8 6 5 38 38 H 0.97003 * 119.99882 * 354.55509 * 13 11 9 39 39 H 1.08003 * 119.96962 * 359.97438 * 15 14 13 40 40 H 1.07996 * 119.93069 * 179.69916 * 16 15 14 41 41 H 1.08001 * 119.95333 * 180.02562 * 17 16 15 42 42 H 0.96999 * 120.00459 * 180.02562 * 23 22 20 43 43 H 1.07997 * 120.07337 * 180.02562 * 28 18 17 44 44 H 1.09002 * 110.03132 * 119.28819 * 29 6 5 45 45 H 1.09001 * 110.03191 * 240.72077 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9107 1.0213 0.0000 4 6 2.0721 -0.7836 -1.2212 5 6 3.4907 -1.1990 -0.7584 6 6 3.3164 -1.5398 0.7360 7 1 3.1694 -2.6126 0.8604 8 7 4.4941 -1.1042 1.4906 9 6 5.5529 -1.9277 1.6218 10 8 5.5309 -3.0300 1.1144 11 6 6.7534 -1.4839 2.3915 12 8 6.7753 -0.3817 2.8994 13 7 7.8124 -2.3073 2.5223 14 6 8.9785 -1.8524 3.1434 15 6 9.7402 -2.7219 3.9156 16 6 10.8929 -2.2726 4.5303 17 6 11.2927 -0.9586 4.3794 18 6 10.5367 -0.0849 3.6081 19 8 10.9302 1.2060 3.4610 20 6 12.1222 1.5467 3.9909 21 1 12.7555 0.7887 4.4277 22 6 12.5351 2.8702 3.9750 23 7 11.7636 3.7936 3.4433 24 14 14.1870 3.3421 4.7086 25 1 15.2702 2.6198 3.9945 26 1 14.3911 4.8064 4.5675 27 1 14.2125 2.9756 6.1475 28 6 9.3783 -0.5326 2.9892 29 6 2.0698 -0.7774 1.2182 30 1 -0.3633 0.4739 0.9118 31 1 -0.3632 0.5529 -0.8663 32 1 -0.3634 -1.0266 -0.0456 33 1 1.4580 -1.6618 -1.4202 34 1 2.1221 -0.1417 -2.1007 35 1 4.1898 -0.3720 -0.8821 36 1 3.8315 -2.0739 -1.3120 37 1 4.5119 -0.2231 1.8959 38 1 7.7651 -3.2156 2.1852 39 1 9.4300 -3.7495 4.0359 40 1 11.4804 -2.9487 5.1338 41 1 12.1946 -0.6107 4.8609 42 1 12.0526 4.7195 3.4318 43 1 8.7891 0.1447 2.3888 44 1 1.3174 -1.4804 1.5759 45 1 2.3411 -0.0834 2.0137 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782160267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:58 Heat of formation + Delta-G solvation = -100.913796 kcal Electronic energy + Delta-G solvation = -27381.994237 eV Core-core repulsion = 23363.901942 eV Total energy + Delta-G solvation = -4018.092295 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.20740 -40.94318 -40.12577 -38.99678 -38.29383 -35.97222 -35.02276 -34.26556 -31.57560 -31.29074 -30.30371 -29.46717 -27.40298 -26.55041 -25.30824 -23.68191 -23.01895 -21.69523 -21.48255 -20.87077 -20.17831 -19.64907 -18.87852 -18.13746 -17.16077 -17.12409 -16.88692 -16.77895 -16.23665 -15.99556 -15.70995 -15.63199 -15.55399 -15.26622 -14.93863 -14.48104 -14.41400 -14.31103 -13.82174 -13.60442 -13.26047 -13.18183 -13.08542 -12.92422 -12.72738 -12.65218 -12.44814 -12.38255 -12.16008 -11.92528 -11.70311 -11.51102 -11.44547 -11.42836 -11.33528 -10.78526 -10.74742 -10.33790 -9.43078 -8.95052 -8.46739 -6.16236 -0.06587 0.60225 0.68527 1.15428 1.35865 1.47357 1.52850 1.98954 2.17434 2.47081 2.80341 3.14382 3.20820 3.51866 3.54678 3.58958 3.87435 4.08847 4.33006 4.33260 4.34840 4.36743 4.42660 4.50135 4.57991 4.64649 4.67466 4.69455 4.77608 4.93127 4.96128 5.02125 5.09863 5.10653 5.11455 5.23674 5.28906 5.32867 5.35960 5.37294 5.53965 5.59445 5.69774 5.83458 6.01532 6.11338 6.22334 6.62729 6.80353 6.96957 7.77590 8.76619 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015940 B = 0.002297 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.204419 B =12185.076986 C =13564.136503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.073 0.927 4 C -0.112 4.112 5 C -0.138 4.138 6 C 0.135 3.865 7 H 0.093 0.907 8 N -0.683 5.683 9 C 0.522 3.478 10 O -0.532 6.532 11 C 0.497 3.503 12 O -0.525 6.525 13 N -0.628 5.628 14 C 0.176 3.824 15 C -0.200 4.200 16 C -0.046 4.046 17 C -0.248 4.248 18 C 0.129 3.871 19 O -0.231 6.231 20 C -0.414 4.414 21 H 0.107 0.893 22 C -0.026 4.026 23 N -0.923 5.923 24 Si 1.022 2.978 25 H -0.255 1.255 26 H -0.274 1.274 27 H -0.255 1.255 28 C -0.208 4.208 29 C -0.124 4.124 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.417 0.583 38 H 0.434 0.566 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.127 0.873 42 H 0.273 0.727 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.598 -13.838 -4.866 23.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.092 0.908 4 C -0.150 4.150 5 C -0.177 4.177 6 C 0.032 3.968 7 H 0.111 0.889 8 N -0.336 5.336 9 C 0.302 3.698 10 O -0.409 6.409 11 C 0.279 3.721 12 O -0.400 6.400 13 N -0.276 5.276 14 C 0.083 3.917 15 C -0.220 4.220 16 C -0.064 4.064 17 C -0.268 4.268 18 C 0.077 3.923 19 O -0.138 6.138 20 C -0.490 4.490 21 H 0.125 0.875 22 C -0.223 4.223 23 N -0.561 5.561 24 Si 0.841 3.159 25 H -0.179 1.179 26 H -0.199 1.199 27 H -0.179 1.179 28 C -0.229 4.229 29 C -0.162 4.162 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.254 0.746 38 H 0.275 0.725 39 H 0.180 0.820 40 H 0.181 0.819 41 H 0.145 0.855 42 H 0.082 0.918 43 H 0.119 0.881 44 H 0.110 0.890 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.798 -13.436 -5.060 23.654 hybrid contribution 0.790 0.856 0.166 1.177 sum -18.008 -12.580 -4.893 22.505 Atomic orbital electron populations 1.21786 0.93678 1.02390 1.02108 1.21980 0.96537 0.99100 0.93953 0.90846 1.22536 0.94234 1.00437 0.97818 1.22795 0.98822 1.01481 0.94585 1.22014 0.83359 1.00474 0.90947 0.88874 1.46096 1.15258 1.19234 1.53024 1.19608 0.83932 0.85316 0.80988 1.90747 1.81144 1.20817 1.48172 1.20695 0.84934 0.85163 0.81282 1.90870 1.81460 1.21489 1.46165 1.42968 1.10724 1.17282 1.56620 1.17276 0.86765 0.92299 0.95390 1.20918 0.98007 1.00902 1.02176 1.21057 0.95202 0.93710 0.96449 1.21389 1.03663 0.95608 1.06115 1.19598 0.93379 0.85443 0.93859 1.83965 1.37227 1.22669 1.69911 1.21860 0.92638 0.94822 1.39651 0.87534 1.26688 1.04320 0.94027 0.97264 1.70205 1.39603 1.02163 1.44124 0.84603 0.74602 0.77711 0.78992 1.17903 1.19857 1.17912 1.19990 0.98247 0.96705 1.07975 1.22551 0.95395 0.99585 0.98661 0.92382 0.92211 0.91910 0.90087 0.90741 0.91964 0.91403 0.74556 0.72537 0.81983 0.81935 0.85501 0.91847 0.88111 0.88958 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.12 71.98 0.66 -0.57 16 2 C -0.10 -1.06 3.46 -9.72 -0.03 -1.10 16 3 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 4 C -0.11 -1.29 6.33 31.89 0.20 -1.09 16 5 C -0.14 -2.23 6.53 31.67 0.21 -2.02 16 6 C 0.14 2.22 3.25 45.72 0.15 2.37 16 7 H 0.09 1.63 7.56 -2.39 -0.02 1.61 16 8 N -0.68 -14.41 5.03 -440.53 -2.21 -16.62 16 9 C 0.52 13.69 7.88 87.24 0.69 14.38 16 10 O -0.53 -14.78 16.14 -3.29 -0.05 -14.83 16 11 C 0.50 15.82 7.61 87.24 0.66 16.49 16 12 O -0.52 -20.68 14.27 -3.33 -0.05 -20.73 16 13 N -0.63 -18.68 5.32 -304.89 -1.62 -20.30 16 14 C 0.18 6.41 6.24 38.20 0.24 6.64 16 15 C -0.20 -6.00 9.96 22.44 0.22 -5.77 16 16 C -0.05 -1.47 10.03 22.23 0.22 -1.25 16 17 C -0.25 -10.65 9.13 22.42 0.20 -10.44 16 18 C 0.13 6.67 6.64 22.56 0.15 6.82 16 19 O -0.23 -14.46 9.75 -22.68 -0.22 -14.68 16 20 C -0.41 -24.42 9.44 67.92 0.64 -23.78 16 21 H 0.11 5.64 5.29 -2.91 -0.02 5.62 16 22 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16 23 N -0.92 -58.08 13.67 21.61 0.30 -57.79 16 24 Si 1.02 43.10 29.55 68.60 2.03 45.13 16 25 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 27 H -0.25 -10.00 7.11 99.48 0.71 -9.30 16 28 C -0.21 -9.79 8.59 22.52 0.19 -9.59 16 29 C -0.12 -1.48 6.14 31.32 0.19 -1.29 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.47 8.12 -2.39 -0.02 0.45 16 33 H 0.08 0.79 8.04 -2.39 -0.02 0.77 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 1.16 8.05 -2.39 -0.02 1.14 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.42 8.52 7.79 -92.71 -0.72 7.80 16 38 H 0.43 9.97 8.30 -92.71 -0.77 9.20 16 39 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 40 H 0.16 3.74 8.06 -2.91 -0.02 3.71 16 41 H 0.13 5.42 5.70 -2.91 -0.02 5.40 16 42 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 43 H 0.10 5.19 6.53 -2.91 -0.02 5.17 16 44 H 0.09 0.89 7.84 -2.39 -0.02 0.87 16 45 H 0.08 0.93 7.62 -2.39 -0.02 0.91 16 Total: -1.00 -78.18 376.88 2.78 -75.40 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: -0.45 Total: 35.64 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 5.06 Total: -11.23 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -3.54 Total: -94.71 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -0.32 Total: -50.23 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -78.18 2.78 -75.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782160267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.516 kcal (2) G-P(sol) polarization free energy of solvation -78.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds