Wall clock time and date at job start Tue Mar 31 2020 17:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.43807 * 2 1 4 4 C 1.54890 * 110.48823 * 122.54567 * 2 1 3 5 5 C 1.54882 * 102.91740 * 156.52763 * 4 2 1 6 6 C 1.54461 * 104.09976 * 322.29778 * 5 4 2 7 7 H 1.09004 * 110.12156 * 142.73151 * 6 5 4 8 8 N 1.46501 * 109.90258 * 264.07875 * 6 5 4 9 9 C 1.34773 * 120.00303 * 272.19806 * 8 6 5 10 10 O 1.21360 * 120.00300 * 359.97438 * 9 8 6 11 11 C 1.49349 * 120.00068 * 179.97438 * 9 8 6 12 12 O 1.21379 * 120.00205 * 359.97438 * 11 9 8 13 13 N 1.34777 * 120.00307 * 179.97438 * 11 9 8 14 14 C 1.39722 * 120.00188 * 175.49120 * 13 11 9 15 15 C 1.39022 * 120.04244 * 214.86078 * 14 13 11 16 16 C 1.38144 * 120.06043 * 179.79292 * 15 14 13 17 17 C 1.38175 * 120.14497 * 0.46748 * 16 15 14 18 18 C 1.38924 * 120.08167 * 359.78342 * 17 16 15 19 19 O 1.35750 * 120.03174 * 179.97438 * 18 17 16 20 20 C 1.34833 * 116.99784 * 5.32418 * 19 18 17 21 21 H 1.08001 * 120.00397 * 354.96211 * 20 19 18 22 22 C 1.38648 * 119.99971 * 174.95931 * 20 19 18 23 23 N 1.31558 * 120.00263 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 120.00297 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46880 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46944 * 119.99946 * 24 22 20 27 27 H 1.48494 * 109.47363 * 240.00458 * 24 22 20 28 28 C 1.38757 * 119.93541 * 359.97438 * 18 17 16 29 29 C 1.53870 * 106.68776 * 23.34597 * 6 5 4 30 30 H 1.08998 * 109.47443 * 298.91083 * 1 2 3 31 31 H 1.09000 * 109.47071 * 58.91376 * 1 2 3 32 32 H 1.08997 * 109.47222 * 178.91187 * 1 2 3 33 33 H 1.09005 * 110.75223 * 274.93980 * 4 2 1 34 34 H 1.08999 * 110.75324 * 38.11696 * 4 2 1 35 35 H 1.08999 * 110.48920 * 80.82945 * 5 4 2 36 36 H 1.09006 * 110.48628 * 203.46738 * 5 4 2 37 37 H 0.97001 * 119.99749 * 92.18765 * 8 6 5 38 38 H 0.97004 * 119.99706 * 355.49525 * 13 11 9 39 39 H 1.08003 * 119.97107 * 0.02562 * 15 14 13 40 40 H 1.07999 * 119.92250 * 180.20814 * 16 15 14 41 41 H 1.07995 * 119.95975 * 179.76781 * 17 16 15 42 42 H 0.97000 * 120.00324 * 180.02562 * 23 22 20 43 43 H 1.08002 * 120.06818 * 179.97438 * 28 18 17 44 44 H 1.09005 * 110.03002 * 240.87524 * 29 6 5 45 45 H 1.08993 * 110.03546 * 119.43979 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7806 1.2231 5 6 3.4904 -1.2012 0.7644 6 6 3.3165 -1.5415 -0.7321 7 1 4.1928 -1.2188 -1.2944 8 7 3.1189 -2.9838 -0.8960 9 6 4.1839 -3.7992 -1.0277 10 8 5.3066 -3.3386 -1.0111 11 6 3.9825 -5.2697 -1.1941 12 8 2.8597 -5.7305 -1.2102 13 7 5.0474 -6.0851 -1.3263 14 6 4.8644 -7.4689 -1.3873 15 6 5.8052 -8.3210 -0.8202 16 6 5.6225 -9.6892 -0.8765 17 6 4.5100 -10.2154 -1.5047 18 6 3.5688 -9.3696 -2.0780 19 8 2.4764 -9.8877 -2.6954 20 6 2.3076 -11.2234 -2.6216 21 1 3.0654 -11.8388 -2.1597 22 6 1.1611 -11.8068 -3.1388 23 7 0.2381 -11.0573 -3.7019 24 14 0.9268 -13.6573 -3.0360 25 1 2.0999 -14.2680 -2.3607 26 1 -0.3028 -13.9581 -2.2596 27 1 0.7968 -14.2166 -4.4054 28 6 3.7463 -7.9947 -2.0190 29 6 2.0699 -0.7804 -1.2163 30 1 -0.3634 0.4968 0.8996 31 1 -0.3633 0.5306 -0.8801 32 1 -0.3633 -1.0274 -0.0195 33 1 2.1251 -0.1357 2.1003 34 1 1.4561 -1.6565 1.4262 35 1 4.1916 -0.3758 0.8875 36 1 3.8277 -2.0756 1.3210 37 1 2.2216 -3.3520 -0.9095 38 1 5.9409 -5.7112 -1.3791 39 1 6.6777 -7.9129 -0.3318 40 1 6.3530 -10.3490 -0.4323 41 1 4.3721 -11.2855 -1.5503 42 1 -0.5642 -11.4654 -4.0634 43 1 3.0162 -7.3352 -2.4643 44 1 1.3175 -1.4842 -1.5723 45 1 2.3411 -0.0883 -2.0135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782160268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:07 Heat of formation + Delta-G solvation = -99.411238 kcal Electronic energy + Delta-G solvation = -27506.306805 eV Core-core repulsion = 23488.279665 eV Total energy + Delta-G solvation = -4018.027139 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -42.21246 -40.95171 -40.13077 -38.97902 -38.28367 -35.93772 -34.94069 -34.25920 -31.56971 -31.27977 -30.29411 -29.51621 -27.41172 -26.54653 -25.34651 -23.73033 -23.03726 -21.82135 -21.28080 -20.76849 -20.13421 -19.63123 -18.83959 -18.08567 -17.35547 -16.94797 -16.88784 -16.77040 -16.52422 -16.05144 -15.94804 -15.58073 -15.36937 -15.10339 -14.77005 -14.45113 -14.39340 -14.29514 -13.86978 -13.61929 -13.30615 -13.25858 -13.14075 -12.83060 -12.72942 -12.70352 -12.39845 -12.31282 -12.08272 -11.97063 -11.74669 -11.49215 -11.42344 -11.40799 -11.30568 -10.78891 -10.70308 -10.32896 -9.43397 -8.94901 -8.46603 -6.15954 -0.04301 0.59684 0.68483 1.16375 1.35963 1.44770 1.55069 1.99357 2.17400 2.48039 2.80633 3.14945 3.21780 3.52879 3.55070 3.57879 3.89183 4.10822 4.29049 4.33645 4.36752 4.42016 4.46363 4.52373 4.58218 4.59683 4.68931 4.69795 4.83355 4.92910 4.94800 5.00498 5.10738 5.11425 5.12718 5.23504 5.28369 5.33542 5.35205 5.40019 5.54786 5.60241 5.70409 5.84434 6.02590 6.11879 6.23063 6.63550 6.81364 6.97340 7.78244 8.77110 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015147 B = 0.002395 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.141773 B =11689.951865 C =13144.902347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 H 0.090 0.910 4 C -0.121 4.121 5 C -0.132 4.132 6 C 0.133 3.867 7 H 0.092 0.908 8 N -0.682 5.682 9 C 0.523 3.477 10 O -0.531 6.531 11 C 0.496 3.504 12 O -0.525 6.525 13 N -0.627 5.627 14 C 0.174 3.826 15 C -0.199 4.199 16 C -0.047 4.047 17 C -0.248 4.248 18 C 0.127 3.873 19 O -0.232 6.232 20 C -0.413 4.413 21 H 0.108 0.892 22 C -0.026 4.026 23 N -0.923 5.923 24 Si 1.022 2.978 25 H -0.247 1.247 26 H -0.270 1.270 27 H -0.269 1.269 28 C -0.207 4.207 29 C -0.126 4.126 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.416 0.584 38 H 0.434 0.566 39 H 0.162 0.838 40 H 0.162 0.838 41 H 0.127 0.873 42 H 0.272 0.728 43 H 0.107 0.893 44 H 0.074 0.926 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.141 20.401 9.327 23.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.109 0.891 4 C -0.158 4.158 5 C -0.170 4.170 6 C 0.030 3.970 7 H 0.110 0.890 8 N -0.335 5.335 9 C 0.302 3.698 10 O -0.409 6.409 11 C 0.278 3.722 12 O -0.400 6.400 13 N -0.275 5.275 14 C 0.080 3.920 15 C -0.220 4.220 16 C -0.065 4.065 17 C -0.268 4.268 18 C 0.076 3.924 19 O -0.138 6.138 20 C -0.489 4.489 21 H 0.125 0.875 22 C -0.223 4.223 23 N -0.561 5.561 24 Si 0.841 3.159 25 H -0.170 1.170 26 H -0.195 1.195 27 H -0.194 1.194 28 C -0.229 4.229 29 C -0.164 4.164 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.253 0.747 38 H 0.275 0.725 39 H 0.180 0.820 40 H 0.180 0.820 41 H 0.144 0.856 42 H 0.081 0.919 43 H 0.125 0.875 44 H 0.092 0.908 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.762 20.591 9.111 23.817 hybrid contribution -0.645 -0.910 -0.381 1.179 sum 7.117 19.681 8.730 22.676 Atomic orbital electron populations 1.21820 0.94521 1.01783 1.02274 1.21966 0.95849 0.99654 0.93458 0.89139 1.22608 0.94959 0.99960 0.98280 1.22802 0.98526 1.01687 0.94017 1.22033 1.00235 0.77098 0.97595 0.89034 1.46083 1.09253 1.08118 1.70009 1.19569 0.85813 0.86172 0.78226 1.90747 1.23503 1.76619 1.49981 1.20727 0.84997 0.88698 0.77777 1.90867 1.24462 1.77112 1.47585 1.42939 1.11222 1.03851 1.69450 1.17305 0.95431 0.82178 0.97110 1.20916 1.01846 0.92774 1.06430 1.21042 0.95432 0.94974 0.95082 1.21385 0.97664 1.00304 1.07449 1.19623 0.88042 0.93004 0.91714 1.83958 1.39210 1.25317 1.65331 1.21951 1.06492 0.79542 1.40893 0.87506 1.26680 0.93812 1.06314 0.95504 1.70219 1.09440 1.38403 1.38018 0.84481 0.79341 0.73276 0.78770 1.16999 1.19527 1.19364 1.20161 1.01922 0.92329 1.08471 1.22584 0.95447 0.99237 0.99121 0.92001 0.92112 0.93238 0.90229 0.92145 0.89182 0.92602 0.74706 0.72540 0.82042 0.82002 0.85568 0.91875 0.87459 0.90773 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.12 71.98 0.66 -0.88 16 2 C -0.09 -0.93 3.46 -9.72 -0.03 -0.97 16 3 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 4 C -0.12 -1.45 6.32 31.88 0.20 -1.25 16 5 C -0.13 -1.90 6.55 31.73 0.21 -1.69 16 6 C 0.13 2.13 3.25 45.78 0.15 2.28 16 7 H 0.09 1.58 7.56 -2.38 -0.02 1.56 16 8 N -0.68 -14.25 5.02 -440.22 -2.21 -16.45 16 9 C 0.52 13.55 7.88 87.24 0.69 14.24 16 10 O -0.53 -14.54 16.14 -3.28 -0.05 -14.59 16 11 C 0.50 15.74 7.73 87.24 0.67 16.41 16 12 O -0.53 -20.76 13.91 -3.34 -0.05 -20.80 16 13 N -0.63 -18.61 5.32 -304.89 -1.62 -20.23 16 14 C 0.17 6.30 6.29 38.20 0.24 6.54 16 15 C -0.20 -6.00 9.97 22.44 0.22 -5.77 16 16 C -0.05 -1.51 10.03 22.23 0.22 -1.29 16 17 C -0.25 -10.68 9.17 22.42 0.21 -10.48 16 18 C 0.13 6.62 6.64 22.56 0.15 6.77 16 19 O -0.23 -14.49 9.76 -22.78 -0.22 -14.72 16 20 C -0.41 -24.42 9.49 67.92 0.64 -23.77 16 21 H 0.11 5.69 5.20 -2.91 -0.02 5.68 16 22 C -0.03 -1.50 5.49 84.83 0.47 -1.04 16 23 N -0.92 -58.08 13.67 21.61 0.30 -57.78 16 24 Si 1.02 43.27 29.55 68.60 2.03 45.30 16 25 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 27 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 28 C -0.21 -9.78 8.64 22.52 0.19 -9.59 16 29 C -0.13 -1.52 6.14 31.32 0.19 -1.32 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.61 8.11 -2.39 -0.02 0.59 16 33 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.06 0.85 8.06 -2.39 -0.02 0.83 16 35 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.00 8.05 -2.38 -0.02 0.98 16 37 H 0.42 8.58 7.79 -92.71 -0.72 7.86 16 38 H 0.43 9.95 8.30 -92.71 -0.77 9.18 16 39 H 0.16 3.39 8.06 -2.91 -0.02 3.36 16 40 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 41 H 0.13 5.41 5.63 -2.91 -0.02 5.40 16 42 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 43 H 0.11 5.55 6.23 -2.91 -0.02 5.54 16 44 H 0.07 0.98 7.29 -2.38 -0.02 0.96 16 45 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -78.11 376.34 2.80 -75.31 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: -0.45 Total: 35.77 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 5.08 Total: -11.80 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -3.54 Total: -94.47 kcal Atomic # 8 Polarization: -49.79 SS G_CDS: -0.32 Total: -50.11 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -78.11 2.80 -75.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782160268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.103 kcal (2) G-P(sol) polarization free energy of solvation -78.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds