Wall clock time and date at job start Tue Mar 31 2020 17:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.67346 * 2 1 4 4 C 1.54890 * 110.75837 * 236.76900 * 2 1 3 5 5 C 1.54264 * 104.20025 * 203.55521 * 4 2 1 6 6 C 1.53876 * 106.59314 * 23.60938 * 5 4 2 7 7 H 1.09000 * 110.03048 * 240.66385 * 6 5 4 8 8 N 1.46499 * 110.03136 * 119.28608 * 6 5 4 9 9 C 1.34779 * 120.00140 * 86.44782 * 8 6 5 10 10 O 1.21359 * 120.00177 * 0.02562 * 9 8 6 11 11 C 1.49351 * 119.99946 * 180.02562 * 9 8 6 12 12 O 1.21378 * 120.00315 * 0.02562 * 11 9 8 13 13 N 1.34778 * 119.99890 * 180.02562 * 11 9 8 14 14 C 1.39732 * 120.00215 * 175.47453 * 13 11 9 15 15 C 1.39021 * 120.04228 * 215.10137 * 14 13 11 16 16 C 1.38137 * 120.05801 * 179.97438 * 15 14 13 17 17 C 1.38182 * 120.14706 * 0.02562 * 16 15 14 18 18 C 1.38924 * 120.08171 * 0.02562 * 17 16 15 19 19 O 1.35746 * 120.03041 * 179.97438 * 18 17 16 20 20 C 1.34829 * 117.00189 * 5.32636 * 19 18 17 21 21 H 1.07997 * 120.00119 * 354.67621 * 20 19 18 22 22 C 1.38651 * 120.00295 * 174.94869 * 20 19 18 23 23 N 1.31557 * 119.99890 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00135 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46966 * 60.00588 * 24 22 20 26 26 H 1.48503 * 109.47047 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47402 * 300.00271 * 24 22 20 28 28 C 1.38761 * 119.93769 * 0.25813 * 18 17 16 29 29 C 1.54259 * 106.60262 * 0.02562 * 6 5 4 30 30 H 1.09003 * 109.46828 * 181.77507 * 1 2 3 31 31 H 1.08995 * 109.47041 * 301.77726 * 1 2 3 32 32 H 1.08995 * 109.47159 * 61.77814 * 1 2 3 33 33 H 1.09005 * 110.48443 * 84.87229 * 4 2 1 34 34 H 1.09003 * 110.59863 * 322.29575 * 4 2 1 35 35 H 1.09000 * 110.03289 * 264.32660 * 5 4 2 36 36 H 1.08997 * 110.07032 * 142.91264 * 5 4 2 37 37 H 0.97007 * 120.00145 * 266.45198 * 8 6 5 38 38 H 0.96999 * 119.99848 * 355.47371 * 13 11 9 39 39 H 1.07993 * 119.96938 * 359.97438 * 15 14 13 40 40 H 1.07994 * 119.92761 * 180.02562 * 16 15 14 41 41 H 1.08003 * 119.96095 * 180.02562 * 17 16 15 42 42 H 0.97005 * 120.00179 * 180.02562 * 23 22 20 43 43 H 1.07994 * 120.07046 * 179.72591 * 28 18 17 44 44 H 1.08997 * 110.48943 * 95.06661 * 29 6 5 45 45 H 1.08999 * 110.48601 * 217.71227 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0790 -0.7937 -1.2115 5 6 3.4950 -1.2213 -0.7735 6 6 3.4975 -1.2223 0.7652 7 1 4.2364 -0.5129 1.1378 8 7 3.7959 -2.5664 1.2657 9 6 5.0758 -2.9570 1.4262 10 8 5.9811 -2.1951 1.1567 11 6 5.3800 -4.3275 1.9359 12 8 4.4746 -5.0898 2.2050 13 7 6.6599 -4.7179 2.0969 14 6 6.9446 -5.9637 2.6621 15 6 8.0587 -6.1192 3.4789 16 6 8.3401 -7.3506 4.0382 17 6 7.5163 -8.4312 3.7876 18 6 6.4019 -8.2828 2.9713 19 8 5.5936 -9.3453 2.7254 20 6 5.8638 -10.4868 3.3900 21 1 6.7420 -10.5528 4.0151 22 6 5.0173 -11.5780 3.2666 23 7 3.9506 -11.4996 2.5005 24 14 5.3921 -13.1597 4.1868 25 1 5.4175 -12.8889 5.6468 26 1 4.3424 -14.1668 3.8880 27 1 6.7144 -13.6811 3.7570 28 6 6.1193 -7.0489 2.4030 29 6 2.0828 -0.7960 1.2086 30 1 -0.3633 -1.0272 0.0318 31 1 -0.3633 0.5412 0.8736 32 1 -0.3633 0.4859 -0.9055 33 1 2.1288 -0.1562 -2.0943 34 1 1.4600 -1.6690 -1.4088 35 1 4.2320 -0.5107 -1.1477 36 1 3.7165 -2.2207 -1.1480 37 1 3.0723 -3.1754 1.4814 38 1 7.3835 -4.1340 1.8205 39 1 8.7047 -5.2767 3.6763 40 1 9.2059 -7.4689 4.6728 41 1 7.7389 -9.3925 4.2268 42 1 3.3581 -12.2628 2.4144 43 1 5.2561 -6.9322 1.7646 44 1 1.4642 -1.6718 1.4044 45 1 2.1355 -0.1597 2.0920 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782160269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:22 Heat of formation + Delta-G solvation = -76.925902 kcal Electronic energy + Delta-G solvation = -27392.841002 eV Core-core repulsion = 23375.788900 eV Total energy + Delta-G solvation = -4017.052102 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 3.40 seconds Orbital eigenvalues (eV) -40.96335 -39.65005 -38.68836 -37.99504 -36.62181 -34.72982 -33.86654 -32.26592 -30.89703 -29.67924 -28.92278 -28.56059 -25.79456 -25.28825 -24.34909 -22.22501 -21.43448 -20.82151 -20.52994 -19.89112 -18.70127 -18.09457 -17.08546 -16.99716 -16.34507 -15.79679 -15.70448 -15.39012 -15.09808 -14.52291 -14.39166 -14.15784 -14.10720 -13.79577 -13.58327 -13.50947 -13.48667 -12.90015 -12.72207 -12.55017 -12.12547 -11.90576 -11.79957 -11.65317 -11.56864 -11.34408 -11.24982 -11.11323 -11.01674 -10.93654 -10.83161 -10.77976 -10.49198 -9.85342 -9.65498 -9.44040 -9.21355 -8.83160 -7.79646 -7.23185 -6.43773 -4.03089 1.26375 2.08971 2.30511 2.36648 3.13688 3.14545 3.17914 3.23752 3.57862 3.97594 4.12467 4.15385 4.38896 4.47274 4.56550 4.89399 4.96994 5.04477 5.10194 5.10573 5.16921 5.18698 5.28783 5.40311 5.48778 5.57526 5.59250 5.69735 5.73040 5.79478 5.80124 5.84536 6.03278 6.03558 6.13435 6.16842 6.31194 6.55900 6.68735 6.95761 7.00045 7.04959 7.31370 7.41990 7.47280 7.66964 7.76654 8.00419 8.07638 9.00940 9.71052 10.73911 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015651 B = 0.002313 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.550185 B =12100.807485 C =13534.764561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.079 0.921 4 C -0.120 4.120 5 C -0.137 4.137 6 C 0.139 3.861 7 H 0.095 0.905 8 N -0.696 5.696 9 C 0.514 3.486 10 O -0.522 6.522 11 C 0.497 3.503 12 O -0.490 6.490 13 N -0.637 5.637 14 C 0.167 3.833 15 C -0.229 4.229 16 C -0.058 4.058 17 C -0.241 4.241 18 C 0.166 3.834 19 O -0.172 6.172 20 C -0.393 4.393 21 H 0.093 0.907 22 C 0.040 3.960 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.185 4.185 29 C -0.127 4.127 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.414 0.586 38 H 0.417 0.583 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.129 0.871 42 H 0.271 0.729 43 H 0.134 0.866 44 H 0.078 0.922 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.857 21.464 -3.782 21.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.097 0.903 4 C -0.158 4.158 5 C -0.176 4.176 6 C 0.035 3.965 7 H 0.113 0.887 8 N -0.349 5.349 9 C 0.294 3.706 10 O -0.398 6.398 11 C 0.278 3.722 12 O -0.363 6.363 13 N -0.283 5.283 14 C 0.075 3.925 15 C -0.250 4.250 16 C -0.077 4.077 17 C -0.261 4.261 18 C 0.111 3.889 19 O -0.075 6.075 20 C -0.469 4.469 21 H 0.110 0.890 22 C -0.165 4.165 23 N -0.495 5.495 24 Si 0.766 3.234 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.206 4.206 29 C -0.165 4.165 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.251 0.749 38 H 0.255 0.745 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.147 0.853 42 H 0.081 0.919 43 H 0.152 0.848 44 H 0.097 0.903 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.296 21.308 -4.013 21.804 hybrid contribution 0.314 -0.802 0.479 0.986 sum -1.983 20.506 -3.534 20.903 Atomic orbital electron populations 1.21760 0.94536 1.02149 1.01767 1.22074 0.95767 0.99195 0.94390 0.90269 1.22450 0.95735 0.99953 0.97671 1.22599 0.97621 1.02677 0.94657 1.21785 0.97639 0.83094 0.94022 0.88685 1.45981 1.07459 1.16444 1.65032 1.20117 0.83872 0.87766 0.78803 1.90747 1.45249 1.54351 1.49412 1.20149 0.83961 0.87862 0.80204 1.90865 1.44999 1.53436 1.46952 1.43003 1.07633 1.17968 1.59734 1.17180 0.96432 0.82907 0.96019 1.20308 1.00877 0.98462 1.05383 1.20517 0.97848 0.91912 0.97389 1.21219 0.98200 1.00179 1.06507 1.19106 0.89742 0.88038 0.92042 1.83986 1.48109 1.17199 1.58195 1.21302 1.10611 0.87687 1.27277 0.88988 1.25306 0.94975 0.99048 0.97181 1.70042 1.12409 1.31474 1.35545 0.85772 0.78393 0.79769 0.79428 1.19464 1.20286 1.19485 1.20145 1.03613 0.89473 1.07342 1.22749 0.94444 1.00741 0.98590 0.92374 0.92563 0.92496 0.91421 0.91216 0.90850 0.90958 0.74878 0.74549 0.87073 0.86815 0.85308 0.91933 0.84841 0.90346 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.29 37.16 0.35 -0.44 16 2 C -0.10 -0.57 3.49 -88.61 -0.31 -0.87 16 3 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.12 -0.79 6.27 -25.07 -0.16 -0.95 16 5 C -0.14 -1.13 6.59 -25.61 -0.17 -1.30 16 6 C 0.14 1.20 3.23 -66.82 -0.22 0.99 16 7 H 0.10 0.90 7.61 -51.93 -0.39 0.50 16 8 N -0.70 -7.44 4.99 -53.19 -0.27 -7.71 16 9 C 0.51 6.87 7.88 -11.63 -0.09 6.78 16 10 O -0.52 -7.57 16.16 5.49 0.09 -7.48 16 11 C 0.50 7.93 7.73 -11.63 -0.09 7.84 16 12 O -0.49 -9.31 13.93 5.47 0.08 -9.23 16 13 N -0.64 -9.95 5.32 -10.31 -0.05 -10.01 16 14 C 0.17 3.15 6.29 -83.77 -0.53 2.63 16 15 C -0.23 -3.95 9.97 -39.33 -0.39 -4.34 16 16 C -0.06 -1.04 10.03 -39.64 -0.40 -1.44 16 17 C -0.24 -5.24 9.17 -39.35 -0.36 -5.60 16 18 C 0.17 4.11 6.64 -39.13 -0.26 3.85 16 19 O -0.17 -5.01 9.75 0.06 0.00 -5.01 16 20 C -0.39 -11.05 9.49 30.88 0.29 -10.75 16 21 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 22 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 23 N -0.86 -25.50 13.67 55.48 0.76 -24.74 16 24 Si 0.94 20.56 29.55 -169.99 -5.02 15.53 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 28 C -0.18 -4.19 8.64 -39.19 -0.34 -4.52 16 29 C -0.13 -0.85 5.98 -25.06 -0.15 -1.00 16 30 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.48 8.05 -51.93 -0.42 0.06 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.69 7.92 -51.93 -0.41 0.28 16 37 H 0.41 4.21 7.81 -40.82 -0.32 3.89 16 38 H 0.42 5.38 8.30 -40.82 -0.34 5.04 16 39 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.13 2.76 5.63 -52.48 -0.30 2.46 16 42 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.13 3.19 6.25 -52.49 -0.33 2.86 16 44 H 0.08 0.52 7.63 -51.93 -0.40 0.13 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 376.62 15.07 5.68 5.68 Total: -1.00 -32.88 376.62 -7.77 -40.66 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -6.11 Total: 10.46 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -2.92 Total: -8.14 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.44 Total: -42.46 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: 0.17 Total: -21.73 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.88 -7.77 -40.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782160269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.270 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.40 seconds