Wall clock time and date at job start Tue Mar 31 2020 17:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.67346 * 2 1 4 4 C 1.54890 * 110.75837 * 236.76900 * 2 1 3 5 5 C 1.54264 * 104.20025 * 203.55521 * 4 2 1 6 6 C 1.53876 * 106.59314 * 23.60938 * 5 4 2 7 7 H 1.09000 * 110.03048 * 240.66385 * 6 5 4 8 8 N 1.46499 * 110.03136 * 119.28608 * 6 5 4 9 9 C 1.34779 * 120.00140 * 86.44782 * 8 6 5 10 10 O 1.21359 * 120.00177 * 0.02562 * 9 8 6 11 11 C 1.49351 * 119.99946 * 180.02562 * 9 8 6 12 12 O 1.21378 * 120.00315 * 0.02562 * 11 9 8 13 13 N 1.34778 * 119.99890 * 180.02562 * 11 9 8 14 14 C 1.39732 * 120.00215 * 175.47453 * 13 11 9 15 15 C 1.39021 * 120.04228 * 215.10137 * 14 13 11 16 16 C 1.38137 * 120.05801 * 179.97438 * 15 14 13 17 17 C 1.38182 * 120.14706 * 0.02562 * 16 15 14 18 18 C 1.38924 * 120.08171 * 0.02562 * 17 16 15 19 19 O 1.35746 * 120.03041 * 179.97438 * 18 17 16 20 20 C 1.34829 * 117.00189 * 5.32636 * 19 18 17 21 21 H 1.07997 * 120.00119 * 354.67621 * 20 19 18 22 22 C 1.38651 * 120.00295 * 174.94869 * 20 19 18 23 23 N 1.31557 * 119.99890 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00135 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46966 * 60.00588 * 24 22 20 26 26 H 1.48503 * 109.47047 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47402 * 300.00271 * 24 22 20 28 28 C 1.38761 * 119.93769 * 0.25813 * 18 17 16 29 29 C 1.54259 * 106.60262 * 0.02562 * 6 5 4 30 30 H 1.09003 * 109.46828 * 181.77507 * 1 2 3 31 31 H 1.08995 * 109.47041 * 301.77726 * 1 2 3 32 32 H 1.08995 * 109.47159 * 61.77814 * 1 2 3 33 33 H 1.09005 * 110.48443 * 84.87229 * 4 2 1 34 34 H 1.09003 * 110.59863 * 322.29575 * 4 2 1 35 35 H 1.09000 * 110.03289 * 264.32660 * 5 4 2 36 36 H 1.08997 * 110.07032 * 142.91264 * 5 4 2 37 37 H 0.97007 * 120.00145 * 266.45198 * 8 6 5 38 38 H 0.96999 * 119.99848 * 355.47371 * 13 11 9 39 39 H 1.07993 * 119.96938 * 359.97438 * 15 14 13 40 40 H 1.07994 * 119.92761 * 180.02562 * 16 15 14 41 41 H 1.08003 * 119.96095 * 180.02562 * 17 16 15 42 42 H 0.97005 * 120.00179 * 180.02562 * 23 22 20 43 43 H 1.07994 * 120.07046 * 179.72591 * 28 18 17 44 44 H 1.08997 * 110.48943 * 95.06661 * 29 6 5 45 45 H 1.08999 * 110.48601 * 217.71227 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0790 -0.7937 -1.2115 5 6 3.4950 -1.2213 -0.7735 6 6 3.4975 -1.2223 0.7652 7 1 4.2364 -0.5129 1.1378 8 7 3.7959 -2.5664 1.2657 9 6 5.0758 -2.9570 1.4262 10 8 5.9811 -2.1951 1.1567 11 6 5.3800 -4.3275 1.9359 12 8 4.4746 -5.0898 2.2050 13 7 6.6599 -4.7179 2.0969 14 6 6.9446 -5.9637 2.6621 15 6 8.0587 -6.1192 3.4789 16 6 8.3401 -7.3506 4.0382 17 6 7.5163 -8.4312 3.7876 18 6 6.4019 -8.2828 2.9713 19 8 5.5936 -9.3453 2.7254 20 6 5.8638 -10.4868 3.3900 21 1 6.7420 -10.5528 4.0151 22 6 5.0173 -11.5780 3.2666 23 7 3.9506 -11.4996 2.5005 24 14 5.3921 -13.1597 4.1868 25 1 5.4175 -12.8889 5.6468 26 1 4.3424 -14.1668 3.8880 27 1 6.7144 -13.6811 3.7570 28 6 6.1193 -7.0489 2.4030 29 6 2.0828 -0.7960 1.2086 30 1 -0.3633 -1.0272 0.0318 31 1 -0.3633 0.5412 0.8736 32 1 -0.3633 0.4859 -0.9055 33 1 2.1288 -0.1562 -2.0943 34 1 1.4600 -1.6690 -1.4088 35 1 4.2320 -0.5107 -1.1477 36 1 3.7165 -2.2207 -1.1480 37 1 3.0723 -3.1754 1.4814 38 1 7.3835 -4.1340 1.8205 39 1 8.7047 -5.2767 3.6763 40 1 9.2059 -7.4689 4.6728 41 1 7.7389 -9.3925 4.2268 42 1 3.3581 -12.2628 2.4144 43 1 5.2561 -6.9322 1.7646 44 1 1.4642 -1.6718 1.4044 45 1 2.1355 -0.1597 2.0920 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782160269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:15 Heat of formation + Delta-G solvation = -99.608438 kcal Electronic energy + Delta-G solvation = -27393.824591 eV Core-core repulsion = 23375.788900 eV Total energy + Delta-G solvation = -4018.035691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 4.56 seconds Orbital eigenvalues (eV) -42.21049 -40.94228 -40.12072 -38.98153 -38.28533 -35.96674 -35.01469 -34.26036 -31.57175 -31.28218 -30.29701 -29.48534 -27.40834 -26.57037 -25.31885 -23.70331 -23.01724 -21.76656 -21.45743 -20.69177 -20.14378 -19.65490 -18.84146 -18.07674 -17.34092 -17.04593 -16.85939 -16.76529 -16.56910 -16.02520 -15.94240 -15.60094 -15.38117 -15.05575 -14.68801 -14.44360 -14.38667 -14.29184 -14.01673 -13.60816 -13.30090 -13.25079 -13.17167 -12.85169 -12.71135 -12.66852 -12.42503 -12.35070 -12.15990 -11.90047 -11.78713 -11.44441 -11.42047 -11.40759 -11.31159 -10.77225 -10.71442 -10.34863 -9.43617 -8.95054 -8.46328 -6.15858 -0.04616 0.59135 0.68512 1.15828 1.35868 1.47326 1.52870 1.98769 2.17820 2.46949 2.80618 3.14937 3.20606 3.52102 3.55176 3.58235 3.88837 4.10794 4.28150 4.33620 4.36700 4.38180 4.44351 4.48619 4.58728 4.62897 4.68095 4.68899 4.83776 4.94381 4.94963 5.02305 5.09705 5.10258 5.11903 5.21952 5.27103 5.35034 5.35527 5.39948 5.54422 5.60133 5.70334 5.83861 6.02330 6.11845 6.22580 6.63004 6.80838 6.97324 7.78201 8.76975 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015651 B = 0.002313 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.550185 B =12100.807485 C =13534.764561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.089 0.911 4 C -0.117 4.117 5 C -0.136 4.136 6 C 0.135 3.865 7 H 0.093 0.907 8 N -0.683 5.683 9 C 0.523 3.477 10 O -0.531 6.531 11 C 0.496 3.504 12 O -0.525 6.525 13 N -0.627 5.627 14 C 0.173 3.827 15 C -0.199 4.199 16 C -0.047 4.047 17 C -0.248 4.248 18 C 0.127 3.873 19 O -0.231 6.231 20 C -0.415 4.415 21 H 0.108 0.892 22 C -0.026 4.026 23 N -0.923 5.923 24 Si 1.022 2.978 25 H -0.256 1.256 26 H -0.274 1.274 27 H -0.254 1.254 28 C -0.208 4.208 29 C -0.124 4.124 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.417 0.583 38 H 0.434 0.566 39 H 0.162 0.838 40 H 0.163 0.837 41 H 0.127 0.873 42 H 0.272 0.728 43 H 0.107 0.893 44 H 0.077 0.923 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.281 23.756 -2.428 23.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.107 0.893 4 C -0.155 4.155 5 C -0.175 4.175 6 C 0.032 3.968 7 H 0.111 0.889 8 N -0.336 5.336 9 C 0.302 3.698 10 O -0.408 6.408 11 C 0.278 3.722 12 O -0.400 6.400 13 N -0.275 5.275 14 C 0.080 3.920 15 C -0.220 4.220 16 C -0.065 4.065 17 C -0.268 4.268 18 C 0.076 3.924 19 O -0.138 6.138 20 C -0.490 4.490 21 H 0.125 0.875 22 C -0.223 4.223 23 N -0.561 5.561 24 Si 0.841 3.159 25 H -0.180 1.180 26 H -0.198 1.198 27 H -0.178 1.178 28 C -0.229 4.229 29 C -0.162 4.162 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.254 0.746 38 H 0.275 0.725 39 H 0.180 0.820 40 H 0.180 0.820 41 H 0.145 0.855 42 H 0.081 0.919 43 H 0.125 0.875 44 H 0.096 0.904 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.120 23.691 -2.669 23.841 hybrid contribution -0.220 -1.151 0.029 1.172 sum -0.340 22.540 -2.641 22.697 Atomic orbital electron populations 1.21751 0.94017 1.01994 1.02360 1.22065 0.96117 0.99358 0.93329 0.89273 1.22437 0.94495 1.00104 0.98465 1.22582 0.98899 1.01834 0.94192 1.22011 0.98851 0.81571 0.94368 0.88924 1.46073 1.06535 1.17306 1.63684 1.19582 0.84694 0.86357 0.79142 1.90747 1.45623 1.54082 1.50373 1.20714 0.83563 0.88691 0.79203 1.90868 1.46065 1.54735 1.48337 1.42940 1.08290 1.16957 1.59285 1.17308 0.96084 0.82947 0.95702 1.20916 0.99487 0.99675 1.01877 1.21044 0.98049 0.90634 0.96783 1.21393 0.97807 1.01656 1.05946 1.19630 0.90894 0.87929 0.93978 1.83955 1.50639 1.18585 1.60598 1.21874 1.11438 0.88064 1.27672 0.87509 1.26687 0.94525 1.02995 0.98084 1.70210 1.14385 1.32937 1.38566 0.84603 0.78740 0.74331 0.78236 1.18007 1.19840 1.17832 1.20158 1.04170 0.90485 1.08081 1.22761 0.92969 1.01014 0.99409 0.92925 0.92005 0.91905 0.90388 0.91671 0.90519 0.92652 0.74585 0.72547 0.82030 0.81969 0.85511 0.91861 0.87519 0.90403 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.29 71.98 0.67 -0.65 16 2 C -0.09 -0.90 3.49 -9.49 -0.03 -0.93 16 3 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 4 C -0.12 -1.40 6.27 31.67 0.20 -1.20 16 5 C -0.14 -2.13 6.59 31.32 0.21 -1.93 16 6 C 0.14 2.19 3.23 45.71 0.15 2.34 16 7 H 0.09 1.60 7.61 -2.39 -0.02 1.58 16 8 N -0.68 -14.31 4.99 -440.54 -2.20 -16.50 16 9 C 0.52 13.60 7.88 87.24 0.69 14.28 16 10 O -0.53 -14.60 16.16 -3.27 -0.05 -14.65 16 11 C 0.50 15.77 7.73 87.24 0.67 16.44 16 12 O -0.52 -20.76 13.93 -3.33 -0.05 -20.80 16 13 N -0.63 -18.64 5.32 -304.88 -1.62 -20.26 16 14 C 0.17 6.29 6.29 38.20 0.24 6.54 16 15 C -0.20 -5.99 9.97 22.43 0.22 -5.77 16 16 C -0.05 -1.50 10.03 22.23 0.22 -1.28 16 17 C -0.25 -10.67 9.17 22.42 0.21 -10.46 16 18 C 0.13 6.60 6.64 22.56 0.15 6.75 16 19 O -0.23 -14.48 9.75 -22.69 -0.22 -14.70 16 20 C -0.41 -24.53 9.49 67.92 0.64 -23.88 16 21 H 0.11 5.67 5.20 -2.91 -0.02 5.65 16 22 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16 23 N -0.92 -58.17 13.67 21.61 0.30 -57.88 16 24 Si 1.02 43.20 29.55 68.60 2.03 45.23 16 25 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.25 -9.96 7.11 99.48 0.71 -9.26 16 28 C -0.21 -9.80 8.64 22.52 0.19 -9.60 16 29 C -0.12 -1.46 5.98 31.68 0.19 -1.27 16 30 H 0.05 0.54 8.13 -2.39 -0.02 0.52 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.06 0.85 8.05 -2.39 -0.02 0.83 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.05 1.06 7.92 -2.39 -0.02 1.04 16 37 H 0.42 8.50 7.81 -92.70 -0.72 7.78 16 38 H 0.43 9.97 8.30 -92.71 -0.77 9.20 16 39 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 40 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 41 H 0.13 5.41 5.63 -2.91 -0.02 5.40 16 42 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 43 H 0.11 5.53 6.25 -2.91 -0.02 5.51 16 44 H 0.08 0.96 7.63 -2.39 -0.02 0.94 16 45 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -78.23 376.62 2.82 -75.41 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: -0.45 Total: 35.81 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 5.08 Total: -11.65 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -3.52 Total: -94.64 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -0.32 Total: -50.16 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -78.23 2.82 -75.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782160269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.202 kcal (2) G-P(sol) polarization free energy of solvation -78.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.56 seconds