Wall clock time and date at job start Tue Mar 31 2020 17:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.71870 * 2 1 4 4 C 1.52992 * 109.72323 * 120.65989 * 2 1 3 5 5 N 1.45643 * 110.77598 * 166.39755 * 4 2 1 6 6 C 1.46494 * 117.70788 * 158.09934 * 5 4 2 7 7 C 1.33381 * 124.58729 * 338.07448 * 5 4 2 8 8 O 1.21289 * 118.48598 * 184.34288 * 7 5 4 9 9 C 1.50068 * 123.01250 * 4.17062 * 7 5 4 10 10 N 1.47053 * 109.08482 * 347.58699 * 9 7 5 11 11 C 1.34778 * 121.35296 * 222.69080 * 10 9 7 12 12 O 1.21284 * 120.00037 * 179.71101 * 11 10 9 13 13 C 1.50701 * 119.99918 * 359.71514 * 11 10 9 14 14 C 1.50708 * 109.47090 * 180.02562 * 13 11 10 15 15 C 1.38300 * 119.93031 * 89.99690 * 14 13 11 16 16 C 1.38103 * 120.06639 * 180.02562 * 15 14 13 17 17 C 1.38875 * 119.93000 * 359.97438 * 16 15 14 18 18 O 1.35753 * 120.06756 * 180.02562 * 17 16 15 19 19 C 1.34830 * 117.00114 * 5.53168 * 18 17 16 20 20 H 1.07999 * 120.00010 * 354.94892 * 19 18 17 21 21 C 1.38649 * 120.00144 * 175.21759 * 19 18 17 22 22 N 1.31558 * 119.99809 * 359.72816 * 21 19 18 23 23 Si 1.86802 * 120.00154 * 179.72492 * 21 19 18 24 24 H 1.48496 * 109.46851 * 90.00224 * 23 21 19 25 25 H 1.48495 * 109.47028 * 210.00292 * 23 21 19 26 26 H 1.48500 * 109.47075 * 330.00529 * 23 21 19 27 27 C 1.38884 * 119.86261 * 0.27199 * 17 16 15 28 28 C 1.38097 * 119.92774 * 359.49687 * 27 17 16 29 29 H 1.08997 * 109.47590 * 180.61115 * 1 2 3 30 30 H 1.09005 * 109.47233 * 300.61109 * 1 2 3 31 31 H 1.09003 * 109.47407 * 60.60693 * 1 2 3 32 32 H 1.09002 * 109.21184 * 286.73167 * 4 2 1 33 33 H 1.09000 * 109.21272 * 46.06288 * 4 2 1 34 34 H 1.09001 * 109.47041 * 89.99845 * 6 5 4 35 35 H 1.08996 * 109.47574 * 209.99949 * 6 5 4 36 36 H 1.09002 * 109.46779 * 330.00272 * 6 5 4 37 37 H 1.09004 * 109.53322 * 227.67116 * 9 7 5 38 38 H 1.08999 * 109.41526 * 107.43159 * 9 7 5 39 39 H 1.08992 * 109.47449 * 60.00096 * 13 11 10 40 40 H 1.08997 * 109.47121 * 299.99446 * 13 11 10 41 41 H 1.08003 * 119.96829 * 359.97438 * 15 14 13 42 42 H 1.07998 * 120.03274 * 179.97438 * 16 15 14 43 43 H 0.97009 * 119.99810 * 179.97438 * 22 21 19 44 44 H 1.08004 * 120.03250 * 179.72259 * 27 17 16 45 45 H 1.08003 * 119.95897 * 180.22848 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8977 1.0261 0.0000 4 6 2.0463 -0.7344 1.2388 5 7 3.4665 -1.0301 1.1096 6 6 4.2270 -1.2695 2.3386 7 6 4.1232 -1.0987 -0.0493 8 8 5.2894 -1.4317 -0.0345 9 6 3.4844 -0.7864 -1.3708 10 7 2.0269 -0.7059 -1.1931 11 6 1.1802 -1.2604 -2.0832 12 8 -0.0177 -1.1838 -1.9097 13 6 1.7220 -1.9759 -3.2938 14 6 0.5771 -2.4995 -4.1222 15 6 0.0297 -1.7121 -5.1187 16 6 -1.0200 -2.1889 -5.8791 17 6 -1.5253 -3.4606 -5.6425 18 8 -2.5567 -3.9323 -6.3887 19 6 -2.9696 -3.1643 -7.4171 20 1 -2.5394 -2.1851 -7.5666 21 6 -3.9505 -3.6295 -8.2795 22 7 -4.4746 -4.8224 -8.0975 23 14 -4.5281 -2.5625 -9.6999 24 1 -3.6943 -2.8385 -10.8972 25 1 -5.9486 -2.8699 -10.0042 26 1 -4.4003 -1.1307 -9.3271 27 6 -0.9768 -4.2468 -4.6376 28 6 0.0758 -3.7662 -3.8839 29 1 -0.3634 -1.0275 0.0110 30 1 -0.3634 0.5233 0.8845 31 1 -0.3634 0.5044 -0.8954 32 1 1.8884 -0.1096 2.1180 33 1 1.4950 -1.6671 1.3587 34 1 4.2010 -2.3319 2.5808 35 1 5.2605 -0.9551 2.1935 36 1 3.7851 -0.6996 3.1560 37 1 3.7220 -1.5743 -2.0857 38 1 3.8606 0.1682 -1.7385 39 1 2.3495 -2.8076 -2.9738 40 1 2.3144 -1.2824 -3.8907 41 1 0.4229 -0.7230 -5.3019 42 1 -1.4473 -1.5734 -6.6569 43 1 -5.1611 -5.1477 -8.7007 44 1 -1.3707 -5.2345 -4.4483 45 1 0.5052 -4.3786 -3.1048 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782878216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:14 Heat of formation + Delta-G solvation = -41.724037 kcal Electronic energy + Delta-G solvation = -28168.089849 eV Core-core repulsion = 24152.564214 eV Total energy + Delta-G solvation = -4015.525635 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.30544 -39.72979 -38.85208 -37.05360 -36.35317 -35.20692 -33.09564 -32.29380 -30.96785 -30.13170 -29.01046 -27.23034 -26.52172 -25.82425 -25.13005 -22.95835 -21.95572 -20.92076 -20.14796 -18.73288 -17.96743 -17.80255 -17.11024 -16.93808 -16.47393 -16.12436 -15.83232 -15.59920 -14.73796 -14.58708 -14.37095 -14.02578 -13.83961 -13.75148 -13.53934 -13.37948 -13.24596 -12.90144 -12.86220 -12.68436 -12.55567 -12.45760 -12.42058 -11.87706 -11.82808 -11.65250 -11.49642 -11.24201 -10.81923 -10.73790 -10.60818 -10.59613 -10.41443 -9.31061 -9.26422 -9.17293 -8.91048 -8.79820 -8.13315 -7.14817 -6.42950 -4.01489 2.11160 2.18968 2.27090 2.41382 2.59024 2.76740 3.14375 3.14865 3.19735 3.91571 3.98478 4.19207 4.38852 4.56851 4.61934 4.72267 4.84171 4.92202 4.95896 5.00287 5.08621 5.12197 5.20919 5.23992 5.31680 5.33523 5.40399 5.45951 5.63927 5.73240 5.75462 5.85913 5.88167 6.04470 6.23627 6.38865 6.43493 6.71305 6.90875 6.92296 7.04063 7.10426 7.26120 7.38425 7.46933 7.64393 7.85525 8.02307 8.13322 9.02762 9.73430 10.75139 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028027 B = 0.002243 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.796605 B =12480.004043 C =12665.366026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.131 3.869 3 H 0.081 0.919 4 C 0.100 3.900 5 N -0.605 5.605 6 C 0.076 3.924 7 C 0.509 3.491 8 O -0.545 6.545 9 C 0.099 3.901 10 N -0.627 5.627 11 C 0.519 3.481 12 O -0.502 6.502 13 C -0.083 4.083 14 C -0.171 4.171 15 C -0.055 4.055 16 C -0.232 4.232 17 C 0.157 3.843 18 O -0.178 6.178 19 C -0.391 4.391 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.863 5.863 23 Si 0.941 3.059 24 H -0.273 1.273 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.191 4.191 28 C -0.059 4.059 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.123 0.877 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.126 0.874 43 H 0.270 0.730 44 H 0.116 0.884 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.423 10.560 17.965 25.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.028 3.972 3 H 0.099 0.901 4 C -0.024 4.024 5 N -0.337 5.337 6 C -0.067 4.067 7 C 0.296 3.704 8 O -0.422 6.422 9 C -0.027 4.027 10 N -0.365 5.365 11 C 0.308 3.692 12 O -0.375 6.375 13 C -0.123 4.123 14 C -0.172 4.172 15 C -0.073 4.073 16 C -0.252 4.252 17 C 0.103 3.897 18 O -0.081 6.081 19 C -0.467 4.467 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.498 5.498 23 Si 0.766 3.234 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.211 4.211 28 C -0.077 4.077 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.141 0.859 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.122 0.878 42 H 0.144 0.856 43 H 0.079 0.921 44 H 0.134 0.866 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 15.005 10.058 17.926 25.449 hybrid contribution -0.215 0.640 -0.564 0.880 sum 14.789 10.698 17.362 25.192 Atomic orbital electron populations 1.22150 0.90655 1.04579 1.01930 1.21600 0.97339 0.95179 0.83131 0.90120 1.22021 0.80007 1.01172 0.99159 1.47175 1.09972 1.69616 1.06958 1.21770 0.97837 1.01567 0.85478 1.20249 0.86862 0.77354 0.85950 1.90769 1.16867 1.47533 1.87051 1.21804 0.80207 1.05300 0.95396 1.48406 1.05618 1.57615 1.24899 1.21059 0.86575 0.77980 0.83565 1.90799 1.15009 1.57021 1.74670 1.20512 0.98053 1.00135 0.93557 1.18590 1.01441 0.96149 1.01051 1.20492 0.95110 0.97407 0.94328 1.21099 1.01568 0.97454 1.05041 1.19389 0.87347 0.91792 0.91124 1.83978 1.40627 1.45210 1.38314 1.21324 1.21534 0.99540 1.04298 0.89079 1.25289 0.96148 0.96676 0.98461 1.70045 1.25891 1.16786 1.37077 0.85712 0.78251 0.79361 0.80105 1.19888 1.20281 1.19215 1.20149 1.00441 1.00675 0.99794 1.20382 0.95340 0.94655 0.97321 0.90169 0.93360 0.90178 0.89376 0.90849 0.92406 0.90181 0.91064 0.85870 0.87709 0.88980 0.88842 0.87844 0.85602 0.92053 0.86580 0.87484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 7.57 37.16 0.28 -1.02 16 2 C 0.13 1.04 3.56 -67.52 -0.24 0.80 16 3 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 4 C 0.10 0.66 5.92 -4.51 -0.03 0.63 16 5 N -0.60 -4.87 3.20 -182.94 -0.59 -5.46 16 6 C 0.08 0.49 10.19 59.84 0.61 1.10 16 7 C 0.51 4.98 7.57 -11.91 -0.09 4.89 16 8 O -0.54 -7.08 16.25 5.55 0.09 -6.99 16 9 C 0.10 0.77 6.38 -5.20 -0.03 0.74 16 10 N -0.63 -5.90 2.98 -166.81 -0.50 -6.39 16 11 C 0.52 6.50 7.64 -10.98 -0.08 6.42 16 12 O -0.50 -8.11 11.57 5.55 0.06 -8.04 16 13 C -0.08 -0.99 4.28 -29.03 -0.12 -1.11 16 14 C -0.17 -2.88 4.38 -104.57 -0.46 -3.33 16 15 C -0.06 -1.01 9.69 -39.61 -0.38 -1.40 16 16 C -0.23 -5.13 9.17 -39.39 -0.36 -5.49 16 17 C 0.16 3.87 6.65 -39.11 -0.26 3.61 16 18 O -0.18 -5.15 9.76 0.04 0.00 -5.15 16 19 C -0.39 -11.03 9.49 30.88 0.29 -10.74 16 20 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -25.52 13.67 55.48 0.76 -24.76 16 23 Si 0.94 20.68 29.55 -169.99 -5.02 15.65 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 27 C -0.19 -4.14 9.99 -39.39 -0.39 -4.53 16 28 C -0.06 -1.06 9.69 -39.61 -0.38 -1.45 16 29 H 0.08 0.95 6.71 -51.93 -0.35 0.61 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.96 6.88 -51.93 -0.36 0.60 16 32 H 0.09 0.37 7.85 -51.93 -0.41 -0.04 16 33 H 0.07 0.54 8.06 -51.93 -0.42 0.12 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.60 7.23 -51.93 -0.38 0.23 16 36 H 0.07 0.28 7.80 -51.93 -0.41 -0.13 16 37 H 0.12 0.87 6.26 -51.93 -0.33 0.54 16 38 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.93 7.50 -51.93 -0.39 0.54 16 40 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 41 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 42 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 43 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16 45 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 368.23 15.07 5.55 5.55 Total: -1.00 -35.14 368.23 -7.50 -42.64 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -6.11 Total: 2.86 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -1.75 Total: -9.91 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: -0.33 Total: -36.61 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: 0.15 Total: -20.18 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.14 -7.50 -42.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782878216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.916 kcal (2) G-P(sol) polarization free energy of solvation -35.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds