Wall clock time and date at job start Tue Mar 31 2020 17:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.71870 * 2 1 4 4 C 1.52992 * 109.72323 * 120.65989 * 2 1 3 5 5 N 1.45643 * 110.77598 * 166.39755 * 4 2 1 6 6 C 1.46494 * 117.70788 * 158.09934 * 5 4 2 7 7 C 1.33381 * 124.58729 * 338.07448 * 5 4 2 8 8 O 1.21289 * 118.48598 * 184.34288 * 7 5 4 9 9 C 1.50068 * 123.01250 * 4.17062 * 7 5 4 10 10 N 1.47053 * 109.08482 * 347.58699 * 9 7 5 11 11 C 1.34778 * 121.35296 * 222.69080 * 10 9 7 12 12 O 1.21284 * 120.00037 * 179.71101 * 11 10 9 13 13 C 1.50701 * 119.99918 * 359.71514 * 11 10 9 14 14 C 1.50708 * 109.47090 * 180.02562 * 13 11 10 15 15 C 1.38300 * 119.93031 * 89.99690 * 14 13 11 16 16 C 1.38103 * 120.06639 * 180.02562 * 15 14 13 17 17 C 1.38875 * 119.93000 * 359.97438 * 16 15 14 18 18 O 1.35753 * 120.06756 * 180.02562 * 17 16 15 19 19 C 1.34830 * 117.00114 * 5.53168 * 18 17 16 20 20 H 1.07999 * 120.00010 * 354.94892 * 19 18 17 21 21 C 1.38649 * 120.00144 * 175.21759 * 19 18 17 22 22 N 1.31558 * 119.99809 * 359.72816 * 21 19 18 23 23 Si 1.86802 * 120.00154 * 179.72492 * 21 19 18 24 24 H 1.48496 * 109.46851 * 90.00224 * 23 21 19 25 25 H 1.48495 * 109.47028 * 210.00292 * 23 21 19 26 26 H 1.48500 * 109.47075 * 330.00529 * 23 21 19 27 27 C 1.38884 * 119.86261 * 0.27199 * 17 16 15 28 28 C 1.38097 * 119.92774 * 359.49687 * 27 17 16 29 29 H 1.08997 * 109.47590 * 180.61115 * 1 2 3 30 30 H 1.09005 * 109.47233 * 300.61109 * 1 2 3 31 31 H 1.09003 * 109.47407 * 60.60693 * 1 2 3 32 32 H 1.09002 * 109.21184 * 286.73167 * 4 2 1 33 33 H 1.09000 * 109.21272 * 46.06288 * 4 2 1 34 34 H 1.09001 * 109.47041 * 89.99845 * 6 5 4 35 35 H 1.08996 * 109.47574 * 209.99949 * 6 5 4 36 36 H 1.09002 * 109.46779 * 330.00272 * 6 5 4 37 37 H 1.09004 * 109.53322 * 227.67116 * 9 7 5 38 38 H 1.08999 * 109.41526 * 107.43159 * 9 7 5 39 39 H 1.08992 * 109.47449 * 60.00096 * 13 11 10 40 40 H 1.08997 * 109.47121 * 299.99446 * 13 11 10 41 41 H 1.08003 * 119.96829 * 359.97438 * 15 14 13 42 42 H 1.07998 * 120.03274 * 179.97438 * 16 15 14 43 43 H 0.97009 * 119.99810 * 179.97438 * 22 21 19 44 44 H 1.08004 * 120.03250 * 179.72259 * 27 17 16 45 45 H 1.08003 * 119.95897 * 180.22848 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8977 1.0261 0.0000 4 6 2.0463 -0.7344 1.2388 5 7 3.4665 -1.0301 1.1096 6 6 4.2270 -1.2695 2.3386 7 6 4.1232 -1.0987 -0.0493 8 8 5.2894 -1.4317 -0.0345 9 6 3.4844 -0.7864 -1.3708 10 7 2.0269 -0.7059 -1.1931 11 6 1.1802 -1.2604 -2.0832 12 8 -0.0177 -1.1838 -1.9097 13 6 1.7220 -1.9759 -3.2938 14 6 0.5771 -2.4995 -4.1222 15 6 0.0297 -1.7121 -5.1187 16 6 -1.0200 -2.1889 -5.8791 17 6 -1.5253 -3.4606 -5.6425 18 8 -2.5567 -3.9323 -6.3887 19 6 -2.9696 -3.1643 -7.4171 20 1 -2.5394 -2.1851 -7.5666 21 6 -3.9505 -3.6295 -8.2795 22 7 -4.4746 -4.8224 -8.0975 23 14 -4.5281 -2.5625 -9.6999 24 1 -3.6943 -2.8385 -10.8972 25 1 -5.9486 -2.8699 -10.0042 26 1 -4.4003 -1.1307 -9.3271 27 6 -0.9768 -4.2468 -4.6376 28 6 0.0758 -3.7662 -3.8839 29 1 -0.3634 -1.0275 0.0110 30 1 -0.3634 0.5233 0.8845 31 1 -0.3634 0.5044 -0.8954 32 1 1.8884 -0.1096 2.1180 33 1 1.4950 -1.6671 1.3587 34 1 4.2010 -2.3319 2.5808 35 1 5.2605 -0.9551 2.1935 36 1 3.7851 -0.6996 3.1560 37 1 3.7220 -1.5743 -2.0857 38 1 3.8606 0.1682 -1.7385 39 1 2.3495 -2.8076 -2.9738 40 1 2.3144 -1.2824 -3.8907 41 1 0.4229 -0.7230 -5.3019 42 1 -1.4473 -1.5734 -6.6569 43 1 -5.1611 -5.1477 -8.7007 44 1 -1.3707 -5.2345 -4.4483 45 1 0.5052 -4.3786 -3.1048 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782878216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:13 Heat of formation + Delta-G solvation = -65.669813 kcal Electronic energy + Delta-G solvation = -28169.128215 eV Core-core repulsion = 24152.564214 eV Total energy + Delta-G solvation = -4016.564001 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.06711 -40.88937 -40.31300 -38.38657 -37.51271 -35.96023 -34.44568 -33.79547 -32.22932 -31.75437 -29.72918 -28.24789 -27.68066 -26.92986 -26.40853 -23.82816 -23.62182 -22.25117 -21.12182 -19.83598 -19.50030 -18.85934 -18.47682 -17.86975 -17.16240 -16.89118 -16.64633 -16.61851 -16.31768 -16.07937 -15.82127 -15.51362 -15.17421 -14.87267 -14.63453 -14.37970 -14.36109 -14.13513 -13.92513 -13.60313 -13.54463 -13.44803 -13.24200 -13.05834 -12.91584 -12.77406 -12.48166 -12.41482 -12.38772 -12.26542 -12.19866 -12.09999 -11.38936 -11.16787 -10.79164 -10.12991 -9.89354 -9.74893 -9.66381 -8.88340 -8.46451 -6.14525 0.63118 0.67987 1.34720 1.42130 1.44297 1.52580 1.63590 1.70033 2.06044 2.18368 2.83029 3.16073 3.29201 3.52919 3.57750 3.74624 3.90365 4.02418 4.06614 4.10831 4.20380 4.26760 4.39694 4.44038 4.47132 4.51526 4.58625 4.61213 4.68284 4.73840 4.77847 4.81115 4.92510 5.08224 5.09252 5.15503 5.16989 5.31736 5.38094 5.58163 5.61882 5.73213 5.79004 6.03955 6.17260 6.27636 6.30456 6.96475 6.98165 7.22271 7.79901 8.77026 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028027 B = 0.002243 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.796605 B =12480.004043 C =12665.366026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.129 3.871 3 H 0.103 0.897 4 C 0.104 3.896 5 N -0.604 5.604 6 C 0.073 3.927 7 C 0.503 3.497 8 O -0.584 6.584 9 C 0.099 3.901 10 N -0.619 5.619 11 C 0.520 3.480 12 O -0.547 6.547 13 C -0.084 4.084 14 C -0.142 4.142 15 C -0.056 4.056 16 C -0.243 4.243 17 C 0.113 3.887 18 O -0.234 6.234 19 C -0.413 4.413 20 H 0.101 0.899 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.020 2.980 24 H -0.262 1.262 25 H -0.271 1.271 26 H -0.254 1.254 27 C -0.206 4.206 28 C -0.057 4.057 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.121 0.879 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.122 0.878 40 H 0.129 0.871 41 H 0.140 0.860 42 H 0.117 0.883 43 H 0.272 0.728 44 H 0.110 0.890 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.188 13.261 19.622 29.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.027 3.973 3 H 0.121 0.879 4 C -0.019 4.019 5 N -0.335 5.335 6 C -0.069 4.069 7 C 0.291 3.709 8 O -0.464 6.464 9 C -0.026 4.026 10 N -0.355 5.355 11 C 0.310 3.690 12 O -0.424 6.424 13 C -0.124 4.124 14 C -0.143 4.143 15 C -0.074 4.074 16 C -0.262 4.262 17 C 0.062 3.938 18 O -0.141 6.141 19 C -0.489 4.489 20 H 0.118 0.882 21 C -0.222 4.222 22 N -0.560 5.560 23 Si 0.839 3.161 24 H -0.186 1.186 25 H -0.196 1.196 26 H -0.177 1.177 27 C -0.226 4.226 28 C -0.075 4.075 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.139 0.861 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.119 0.881 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.140 0.860 40 H 0.147 0.853 41 H 0.158 0.842 42 H 0.135 0.865 43 H 0.081 0.919 44 H 0.128 0.872 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 17.834 12.793 19.655 29.462 hybrid contribution -0.782 -0.128 -0.729 1.077 sum 17.051 12.664 18.926 28.449 Atomic orbital electron populations 1.21950 0.91970 1.02758 1.01753 1.21740 0.96197 0.96379 0.83021 0.87904 1.22067 0.78898 1.01313 0.99653 1.47304 1.10525 1.68566 1.07120 1.21873 0.97322 1.01940 0.85739 1.20573 0.86497 0.76884 0.86905 1.90762 1.18513 1.49526 1.87609 1.21989 0.78659 1.07169 0.94736 1.48328 1.06118 1.56495 1.24609 1.20978 0.86125 0.77881 0.83987 1.90831 1.16846 1.58927 1.75823 1.20639 0.96421 1.02036 0.93264 1.19173 1.00969 0.94810 0.99394 1.20912 0.93740 0.99056 0.93733 1.21224 1.02790 0.96537 1.05661 1.19938 0.88001 0.93613 0.92206 1.83939 1.43404 1.46810 1.39974 1.21818 1.22123 1.00138 1.04806 0.88177 1.26619 0.95968 0.98244 1.01404 1.70196 1.27483 1.19285 1.39075 0.84571 0.77814 0.77703 0.76010 1.18633 1.19598 1.17719 1.20412 1.01663 1.00579 0.99903 1.20823 0.93872 0.95775 0.97045 0.92889 0.90897 0.92862 0.86125 0.91626 0.92689 0.91497 0.88060 0.84608 0.85142 0.86043 0.85269 0.84236 0.86494 0.91873 0.87226 0.84002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 7.57 71.98 0.55 -1.62 16 2 C 0.13 1.59 3.56 44.84 0.16 1.75 16 3 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 4 C 0.10 0.97 5.92 86.54 0.51 1.49 16 5 N -0.60 -7.70 3.20 -851.86 -2.73 -10.42 16 6 C 0.07 0.74 10.19 127.77 1.30 2.04 16 7 C 0.50 8.23 7.57 87.68 0.66 8.89 16 8 O -0.58 -13.89 16.25 -3.06 -0.05 -13.94 16 9 C 0.10 1.12 6.38 85.33 0.54 1.66 16 10 N -0.62 -9.21 2.98 -800.06 -2.39 -11.60 16 11 C 0.52 11.23 7.64 87.66 0.67 11.90 16 12 O -0.55 -16.72 11.57 -3.04 -0.04 -16.75 16 13 C -0.08 -1.61 4.28 29.10 0.12 -1.49 16 14 C -0.14 -4.37 4.38 -19.83 -0.09 -4.46 16 15 C -0.06 -1.97 9.69 22.25 0.22 -1.75 16 16 C -0.24 -10.94 9.17 22.39 0.21 -10.73 16 17 C 0.11 5.84 6.65 22.58 0.15 5.99 16 18 O -0.23 -14.60 9.76 -22.77 -0.22 -14.83 16 19 C -0.41 -24.70 9.49 67.92 0.64 -24.05 16 20 H 0.10 5.51 5.20 -2.91 -0.02 5.49 16 21 C -0.03 -1.47 5.49 84.83 0.47 -1.00 16 22 N -0.92 -57.80 13.67 21.61 0.30 -57.51 16 23 Si 1.02 43.70 29.55 68.60 2.03 45.73 16 24 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 26 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 27 C -0.21 -9.21 9.99 22.39 0.22 -8.99 16 28 C -0.06 -1.98 9.69 22.25 0.22 -1.77 16 29 H 0.05 1.21 6.71 -2.39 -0.02 1.19 16 30 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.05 1.21 6.88 -2.39 -0.02 1.20 16 32 H 0.12 0.41 7.85 -2.39 -0.02 0.39 16 33 H 0.07 0.77 8.06 -2.39 -0.02 0.75 16 34 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.07 0.88 7.23 -2.39 -0.02 0.87 16 36 H 0.10 0.39 7.80 -2.39 -0.02 0.38 16 37 H 0.14 1.22 6.26 -2.39 -0.01 1.20 16 38 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.12 1.73 7.50 -2.39 -0.02 1.71 16 40 H 0.13 1.67 8.08 -2.39 -0.02 1.65 16 41 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 42 H 0.12 5.35 5.64 -2.91 -0.02 5.34 16 43 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 44 H 0.11 4.88 8.06 -2.91 -0.02 4.85 16 45 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -84.97 368.23 4.47 -80.50 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 1.01 Total: 20.96 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: 6.55 Total: -22.14 kcal Atomic # 7 Polarization: -74.71 SS G_CDS: -4.82 Total: -79.53 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -0.31 Total: -45.52 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -84.97 4.47 -80.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782878216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.830 kcal (2) G-P(sol) polarization free energy of solvation -84.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds