Wall clock time and date at job start Tue Mar 31 2020 18:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00192 * 2 1 4 4 H 1.09000 * 110.72948 * 26.60254 * 3 2 1 5 5 C 1.54346 * 110.99044 * 263.08246 * 3 2 1 6 6 C 1.51401 * 105.17373 * 215.31176 * 5 3 2 7 7 C 1.38584 * 130.29936 * 197.20292 * 6 5 3 8 8 C 1.37951 * 120.31773 * 179.97438 * 7 6 5 9 9 C 1.38944 * 119.85840 * 359.97438 * 8 7 6 10 10 N 1.39725 * 120.11240 * 179.97438 * 9 8 7 11 11 C 1.34779 * 120.00157 * 146.76870 * 10 9 8 12 12 O 1.21385 * 119.99780 * 354.71738 * 11 10 9 13 13 C 1.49345 * 120.00334 * 174.72769 * 11 10 9 14 14 O 1.21368 * 120.00023 * 359.97438 * 13 11 10 15 15 N 1.34779 * 120.00334 * 180.02562 * 13 11 10 16 16 C 1.46504 * 120.00303 * 179.97438 * 15 13 11 17 17 H 1.08998 * 109.46519 * 324.99400 * 16 15 13 18 18 C 1.52999 * 109.46992 * 84.99162 * 16 15 13 19 19 C 1.50694 * 109.46874 * 204.99671 * 16 15 13 20 20 H 1.07993 * 120.00287 * 359.97438 * 19 16 15 21 21 C 1.37880 * 119.99927 * 179.72425 * 19 16 15 22 22 N 1.31523 * 119.99731 * 359.97438 * 21 19 16 23 23 Si 1.86793 * 120.00403 * 180.02562 * 21 19 16 24 24 H 1.48495 * 109.47413 * 59.99611 * 23 21 19 25 25 H 1.48495 * 109.47504 * 180.02562 * 23 21 19 26 26 H 1.48511 * 109.47028 * 299.99881 * 23 21 19 27 27 C 1.38793 * 119.77091 * 0.25699 * 9 8 7 28 28 C 1.38289 * 109.73561 * 17.20416 * 6 5 3 29 29 C 1.51388 * 109.74704 * 0.02562 * 28 6 5 30 30 H 1.09009 * 109.46342 * 299.99847 * 1 2 3 31 31 H 1.08997 * 109.47354 * 59.99559 * 1 2 3 32 32 H 1.08990 * 109.47358 * 180.02562 * 1 2 3 33 33 H 1.09001 * 110.30401 * 96.38925 * 5 3 2 34 34 H 1.08994 * 110.30251 * 334.23591 * 5 3 2 35 35 H 1.08003 * 119.83924 * 0.02562 * 7 6 5 36 36 H 1.07996 * 120.07073 * 179.97438 * 8 7 6 37 37 H 0.96992 * 120.00119 * 326.75969 * 10 9 8 38 38 H 0.97001 * 119.99718 * 359.97438 * 15 13 11 39 39 H 1.09001 * 109.46535 * 179.97438 * 18 16 15 40 40 H 1.08997 * 109.47537 * 300.00117 * 18 16 15 41 41 H 1.09002 * 109.46934 * 60.00390 * 18 16 15 42 42 H 0.97002 * 119.99737 * 180.02562 * 22 21 19 43 43 H 1.08005 * 119.91687 * 179.72377 * 27 9 8 44 44 H 1.09002 * 110.30654 * 101.71808 * 29 28 6 45 45 H 1.09008 * 110.29965 * 223.76841 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3345 2.0286 0.4565 5 6 2.3937 1.7399 -1.4305 6 6 3.6640 2.5483 -1.2721 7 6 4.2763 3.4355 -2.1430 8 6 5.4476 4.0689 -1.7824 9 6 6.0160 3.8169 -0.5398 10 7 7.2025 4.4551 -0.1693 11 6 7.4181 4.7808 1.1206 12 8 6.5438 4.6075 1.9446 13 6 8.7325 5.3551 1.5362 14 8 9.6069 5.5282 0.7124 15 7 8.9483 5.6804 2.8262 16 6 10.2380 6.2433 3.2340 17 1 11.0346 5.7918 2.6427 18 6 10.2289 7.7562 3.0065 19 6 10.4720 5.9562 4.6947 20 1 9.7339 5.4095 5.2626 21 6 11.6310 6.3869 5.3049 22 7 12.5325 7.0479 4.6119 23 14 11.9216 6.0305 7.1153 24 1 11.9240 4.5621 7.3366 25 1 13.2314 6.5958 7.5272 26 1 10.8397 6.6507 7.9218 27 6 5.4044 2.9245 0.3296 28 6 4.2278 2.2945 -0.0351 29 6 3.3750 1.2980 0.7209 30 1 -0.3632 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.6051 2.3556 -1.8630 34 1 2.5773 0.8656 -2.0549 35 1 3.8340 3.6325 -3.1084 36 1 5.9216 4.7592 -2.4643 37 1 7.8710 4.6636 -0.8404 38 1 8.2497 5.5418 3.4847 39 1 11.1883 8.1750 3.3104 40 1 10.0596 7.9639 1.9500 41 1 9.4322 8.2077 3.5978 42 1 13.3480 7.3506 5.0411 43 1 5.8466 2.7234 1.2942 44 1 3.8225 0.3051 0.6746 45 1 3.2576 1.6111 1.7584 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783939261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:24 Heat of formation + Delta-G solvation = -88.325620 kcal Electronic energy + Delta-G solvation = -27350.716693 eV Core-core repulsion = 23333.170263 eV Total energy + Delta-G solvation = -4017.546431 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.00930 -40.01754 -38.53173 -37.77747 -35.88068 -35.00781 -33.46697 -32.42037 -31.34145 -29.23622 -28.67167 -27.45152 -26.68725 -25.36075 -24.59327 -22.87472 -21.37954 -21.15875 -20.57240 -19.65912 -18.60686 -17.32673 -17.09659 -16.62193 -16.13380 -15.94151 -15.70521 -15.45146 -15.11214 -14.87510 -14.71058 -14.29771 -13.88843 -13.81305 -13.54179 -13.39493 -13.18773 -13.11947 -12.64709 -12.49848 -12.10170 -12.00133 -11.82729 -11.79570 -11.42046 -11.28632 -11.17530 -11.01879 -10.97092 -10.81569 -10.39562 -10.29585 -10.24078 -9.98195 -9.19418 -9.13040 -8.87136 -8.64366 -8.18241 -8.10823 -6.19126 -4.28841 0.98045 1.22954 1.86556 2.63565 3.24356 3.29173 3.30504 3.31562 3.47907 3.73002 3.97836 4.15765 4.29825 4.33530 4.67339 4.75189 4.86076 4.87510 4.97221 5.02547 5.07325 5.13909 5.14764 5.28799 5.31671 5.37378 5.46417 5.58161 5.60165 5.70982 5.87453 6.06957 6.16621 6.29344 6.45310 6.69319 6.80707 6.81487 6.84002 6.99273 7.06997 7.18954 7.37843 7.59587 7.74905 7.88315 8.02435 8.40309 8.57950 8.82200 9.38115 10.86935 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019671 B = 0.002160 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.087730 B =12959.991461 C =14154.293459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.088 3.912 4 H 0.077 0.923 5 C -0.098 4.098 6 C -0.115 4.115 7 C -0.085 4.085 8 C -0.142 4.142 9 C 0.153 3.847 10 N -0.651 5.651 11 C 0.508 3.492 12 O -0.504 6.504 13 C 0.495 3.505 14 O -0.535 6.535 15 N -0.667 5.667 16 C 0.261 3.739 17 H 0.055 0.945 18 C -0.148 4.148 19 C -0.537 4.537 20 H 0.064 0.936 21 C 0.067 3.933 22 N -0.883 5.883 23 Si 0.906 3.094 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 C -0.106 4.106 28 C -0.075 4.075 29 C -0.080 4.080 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.424 0.576 38 H 0.402 0.598 39 H 0.094 0.906 40 H 0.016 0.984 41 H 0.030 0.970 42 H 0.266 0.734 43 H 0.136 0.864 44 H 0.094 0.906 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.325 -9.732 -12.800 26.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.297 6.297 3 C 0.030 3.970 4 H 0.095 0.905 5 C -0.135 4.135 6 C -0.116 4.116 7 C -0.104 4.104 8 C -0.162 4.162 9 C 0.059 3.941 10 N -0.298 5.298 11 C 0.291 3.709 12 O -0.377 6.377 13 C 0.273 3.727 14 O -0.414 6.414 15 N -0.316 5.316 16 C 0.161 3.839 17 H 0.073 0.927 18 C -0.207 4.207 19 C -0.576 4.576 20 H 0.082 0.918 21 C -0.136 4.136 22 N -0.520 5.520 23 Si 0.733 3.267 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.126 4.126 28 C -0.075 4.075 29 C -0.117 4.117 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.143 0.857 36 H 0.149 0.851 37 H 0.262 0.738 38 H 0.237 0.763 39 H 0.113 0.887 40 H 0.036 0.964 41 H 0.049 0.951 42 H 0.076 0.924 43 H 0.154 0.846 44 H 0.112 0.888 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.922 -9.763 -12.677 26.339 hybrid contribution 0.041 0.218 0.870 0.898 sum -20.881 -9.545 -11.807 25.817 Atomic orbital electron populations 1.22815 0.80881 1.02877 1.00115 1.87925 1.19812 1.27099 1.94847 1.22761 0.94627 0.84725 0.94929 0.90496 1.21465 0.94724 0.99286 0.98024 1.20360 0.97551 0.98709 0.94979 1.20329 0.94779 0.96145 0.99119 1.20806 0.96712 1.02219 0.96450 1.17561 0.87963 0.93866 0.94694 1.43236 1.18962 1.57636 1.09983 1.20987 0.89283 0.78308 0.82364 1.90743 1.44794 1.51142 1.51016 1.19656 0.86808 0.81217 0.85023 1.90734 1.44740 1.54643 1.51270 1.46513 1.19414 1.58946 1.06718 1.18989 0.78632 0.90723 0.95589 0.92744 1.22096 1.03363 0.98317 0.96899 1.21143 1.05074 1.37482 0.93864 0.91788 1.24884 0.95475 0.94529 0.98730 1.69888 1.08923 1.36852 1.36350 0.86439 0.77511 0.78730 0.84051 1.20081 1.21084 1.20044 1.20563 0.95792 0.95427 1.00829 1.20172 0.94887 0.97156 0.95331 1.21051 0.92624 0.98898 0.99079 0.93836 0.93942 0.89524 0.90728 0.89243 0.85741 0.85138 0.73824 0.76311 0.88736 0.96449 0.95075 0.92376 0.84616 0.88791 0.89797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.85 101.05 1.10 1.27 16 2 O -0.38 -3.37 10.45 -35.23 -0.37 -3.74 16 3 C 0.09 0.74 3.56 -25.32 -0.09 0.65 16 4 H 0.08 0.58 7.82 -51.93 -0.41 0.17 16 5 C -0.10 -0.80 6.52 -26.83 -0.18 -0.97 16 6 C -0.12 -1.18 6.14 -104.13 -0.64 -1.82 16 7 C -0.09 -0.82 10.03 -39.56 -0.40 -1.22 16 8 C -0.14 -1.50 9.96 -39.42 -0.39 -1.89 16 9 C 0.15 2.01 6.27 -83.79 -0.53 1.48 16 10 N -0.65 -9.08 5.32 -10.33 -0.05 -9.13 16 11 C 0.51 8.62 7.62 -11.63 -0.09 8.53 16 12 O -0.50 -9.14 14.17 5.47 0.08 -9.07 16 13 C 0.49 9.84 7.85 -11.63 -0.09 9.75 16 14 O -0.54 -11.71 16.15 5.48 0.09 -11.62 16 15 N -0.67 -14.20 5.06 -55.40 -0.28 -14.48 16 16 C 0.26 6.53 2.55 -69.08 -0.18 6.35 16 17 H 0.05 1.53 7.58 -51.93 -0.39 1.14 16 18 C -0.15 -3.59 9.26 37.16 0.34 -3.24 16 19 C -0.54 -14.09 8.73 -34.44 -0.30 -14.39 16 20 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 21 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 22 N -0.88 -24.30 11.34 55.43 0.63 -23.68 16 23 Si 0.91 20.48 29.54 -169.99 -5.02 15.46 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 C -0.11 -1.44 8.65 -39.33 -0.34 -1.78 16 28 C -0.07 -0.87 6.13 -104.22 -0.64 -1.51 16 29 C -0.08 -0.78 6.52 -26.84 -0.17 -0.96 16 30 H 0.04 0.22 8.11 -51.92 -0.42 -0.20 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.73 8.10 -51.93 -0.42 0.30 16 35 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.42 5.20 8.30 -40.82 -0.34 4.86 16 38 H 0.40 7.98 8.01 -40.82 -0.33 7.65 16 39 H 0.09 2.47 6.09 -51.93 -0.32 2.15 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.14 2.02 6.42 -52.48 -0.34 1.68 16 44 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 45 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 LS Contribution 378.87 15.07 5.71 5.71 Total: -1.00 -30.26 378.87 -8.21 -38.47 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -6.30 Total: 10.13 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -2.69 Total: 1.94 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.29 Total: -47.29 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.20 Total: -24.43 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.26 -8.21 -38.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783939261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.852 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds