Wall clock time and date at job start Tue Mar 31 2020 18:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42893 * 114.00058 * 2 1 4 4 H 1.08993 * 110.88370 * 327.94266 * 3 2 1 5 5 C 1.54344 * 110.82259 * 91.45544 * 3 2 1 6 6 C 1.51387 * 105.18038 * 144.60036 * 5 3 2 7 7 C 1.38579 * 130.30270 * 163.07888 * 6 5 3 8 8 C 1.37949 * 120.32136 * 180.17684 * 7 6 5 9 9 C 1.38946 * 119.85699 * 359.51914 * 8 7 6 10 10 N 1.39727 * 120.11672 * 180.25548 * 9 8 7 11 11 C 1.34774 * 120.00401 * 213.33336 * 10 9 8 12 12 O 1.21382 * 119.99482 * 5.27942 * 11 10 9 13 13 C 1.49349 * 120.00366 * 185.27100 * 11 10 9 14 14 O 1.21360 * 120.00038 * 0.02562 * 13 11 10 15 15 N 1.34781 * 120.00095 * 180.02562 * 13 11 10 16 16 C 1.46494 * 119.99715 * 180.02562 * 15 13 11 17 17 H 1.08995 * 109.47503 * 35.00194 * 16 15 13 18 18 C 1.53003 * 109.47144 * 274.99529 * 16 15 13 19 19 C 1.50706 * 109.47106 * 155.00107 * 16 15 13 20 20 H 1.08001 * 119.99927 * 0.02562 * 19 16 15 21 21 C 1.37876 * 120.00269 * 179.97438 * 19 16 15 22 22 N 1.31514 * 120.00032 * 0.02562 * 21 19 16 23 23 Si 1.86802 * 119.99968 * 179.97438 * 21 19 16 24 24 H 1.48494 * 109.47350 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46730 * 120.00582 * 23 21 19 26 26 H 1.48501 * 109.47179 * 240.00206 * 23 21 19 27 27 C 1.38795 * 119.77123 * 0.23135 * 9 8 7 28 28 C 1.38293 * 109.73414 * 342.80075 * 6 5 3 29 29 C 1.51382 * 109.75160 * 359.97438 * 28 6 5 30 30 H 1.09001 * 109.47393 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47069 * 300.00177 * 1 2 3 32 32 H 1.08996 * 109.47101 * 59.99952 * 1 2 3 33 33 H 1.09003 * 110.30131 * 25.67493 * 5 3 2 34 34 H 1.09001 * 110.29906 * 263.53327 * 5 3 2 35 35 H 1.08004 * 119.84045 * 359.97438 * 7 6 5 36 36 H 1.08001 * 120.07371 * 179.77542 * 8 7 6 37 37 H 0.96999 * 119.99970 * 33.32967 * 10 9 8 38 38 H 0.96999 * 119.99726 * 0.02562 * 15 13 11 39 39 H 1.09002 * 109.46824 * 60.00558 * 18 16 15 40 40 H 1.09002 * 109.47417 * 180.02562 * 18 16 15 41 41 H 1.09003 * 109.47244 * 300.00482 * 18 16 15 42 42 H 0.96996 * 120.00516 * 179.97438 * 22 21 19 43 43 H 1.08002 * 119.91773 * 179.97438 * 27 9 8 44 44 H 1.09004 * 110.31045 * 258.28139 * 29 28 6 45 45 H 1.09004 * 110.39171 * 136.16867 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3798 2.0114 -0.5405 5 6 2.2668 1.7917 1.4422 6 6 3.5486 2.5938 1.3679 7 6 4.0868 3.5082 2.2593 8 6 5.2853 4.1313 1.9793 9 6 5.9614 3.8334 0.8025 10 7 7.1783 4.4573 0.5160 11 6 7.5082 4.7370 -0.7605 12 8 6.7094 4.5351 -1.6519 13 6 8.8564 5.2954 -1.0783 14 8 9.6552 5.4970 -0.1871 15 7 9.1861 5.5756 -2.3548 16 6 10.5087 6.1228 -2.6664 17 1 11.2486 5.6915 -1.9921 18 6 10.4855 7.6428 -2.4932 19 6 10.8694 5.7850 -4.0902 20 1 10.1819 5.2196 -4.7018 21 6 12.0766 6.1986 -4.6123 22 7 12.9136 6.8875 -3.8677 23 14 12.5239 5.7792 -6.3768 24 1 11.4203 5.0022 -6.9959 25 1 12.7377 7.0324 -7.1444 26 1 13.7692 4.9703 -6.3929 27 6 5.4240 2.9136 -0.0872 28 6 4.2190 2.2952 0.1957 29 6 3.4335 1.2719 -0.5965 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.3915 0.9406 2.1117 34 1 1.4449 2.4226 1.7804 35 1 3.5637 3.7366 3.1762 36 1 5.6992 4.8460 2.6752 37 1 7.7858 4.6893 1.2358 38 1 8.5475 5.4148 -3.0670 39 1 10.2247 7.8872 -1.4635 40 1 11.4696 8.0501 -2.7256 41 1 9.7457 8.0741 -3.1676 42 1 13.7631 7.1782 -4.2348 43 1 5.9473 2.6806 -1.0028 44 1 3.8719 0.2814 -0.4748 45 1 3.4076 1.5464 -1.6511 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783939263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:33 Heat of formation + Delta-G solvation = -88.360729 kcal Electronic energy + Delta-G solvation = -27353.920399 eV Core-core repulsion = 23336.372446 eV Total energy + Delta-G solvation = -4017.547953 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.01305 -40.02363 -38.53646 -37.77811 -35.87737 -35.00961 -33.46659 -32.42438 -31.34109 -29.23435 -28.68357 -27.45827 -26.67756 -25.36476 -24.59661 -22.87318 -21.37981 -21.15525 -20.57479 -19.66059 -18.60782 -17.33295 -17.09771 -16.62502 -16.13753 -15.95828 -15.70678 -15.45227 -15.11645 -14.86468 -14.71285 -14.29392 -13.89284 -13.81604 -13.54319 -13.40075 -13.18693 -13.12372 -12.66166 -12.50785 -12.08249 -11.99932 -11.83523 -11.80561 -11.41806 -11.27229 -11.17012 -11.03638 -10.97385 -10.81129 -10.37400 -10.30052 -10.24432 -9.99255 -9.18586 -9.12228 -8.87418 -8.65311 -8.18380 -8.11017 -6.19608 -4.29186 0.97827 1.22774 1.86469 2.63457 3.21643 3.29697 3.30464 3.33589 3.47740 3.72887 3.98014 4.15334 4.30001 4.33511 4.67832 4.74861 4.85829 4.87466 4.96955 5.02239 5.06975 5.13628 5.14647 5.28656 5.31022 5.37446 5.45901 5.57833 5.60342 5.70845 5.87200 6.06697 6.16484 6.29199 6.45037 6.69226 6.80475 6.81510 6.83965 6.99349 7.06915 7.18881 7.37760 7.59757 7.74884 7.88179 8.02558 8.40169 8.58003 8.82321 9.37965 10.86484 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019891 B = 0.002156 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.304729 B =12985.796677 C =14166.966671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.087 3.913 4 H 0.077 0.923 5 C -0.100 4.100 6 C -0.115 4.115 7 C -0.085 4.085 8 C -0.141 4.141 9 C 0.153 3.847 10 N -0.651 5.651 11 C 0.508 3.492 12 O -0.504 6.504 13 C 0.495 3.505 14 O -0.535 6.535 15 N -0.667 5.667 16 C 0.261 3.739 17 H 0.055 0.945 18 C -0.148 4.148 19 C -0.536 4.536 20 H 0.065 0.935 21 C 0.067 3.933 22 N -0.883 5.883 23 Si 0.905 3.095 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.106 4.106 28 C -0.075 4.075 29 C -0.078 4.078 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.424 0.576 38 H 0.402 0.598 39 H 0.016 0.984 40 H 0.095 0.905 41 H 0.030 0.970 42 H 0.265 0.735 43 H 0.136 0.864 44 H 0.094 0.906 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.402 -9.297 11.347 26.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.297 6.297 3 C 0.030 3.970 4 H 0.095 0.905 5 C -0.137 4.137 6 C -0.116 4.116 7 C -0.104 4.104 8 C -0.162 4.162 9 C 0.059 3.941 10 N -0.298 5.298 11 C 0.291 3.709 12 O -0.377 6.377 13 C 0.273 3.727 14 O -0.414 6.414 15 N -0.316 5.316 16 C 0.160 3.840 17 H 0.073 0.927 18 C -0.207 4.207 19 C -0.574 4.574 20 H 0.083 0.917 21 C -0.137 4.137 22 N -0.520 5.520 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.126 4.126 28 C -0.075 4.075 29 C -0.115 4.115 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.143 0.857 36 H 0.149 0.851 37 H 0.262 0.738 38 H 0.237 0.763 39 H 0.035 0.965 40 H 0.113 0.887 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.154 0.846 44 H 0.112 0.888 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -21.999 -9.336 11.243 26.411 hybrid contribution 0.129 0.208 -0.828 0.864 sum -21.870 -9.128 10.415 25.886 Atomic orbital electron populations 1.22800 0.80897 1.02865 1.00124 1.87926 1.19812 1.27074 1.94877 1.22764 0.94524 0.84644 0.95114 0.90522 1.21506 0.94885 0.99179 0.98146 1.20354 0.97259 0.98532 0.95441 1.20327 0.95071 0.96069 0.98916 1.20810 0.95630 1.02041 0.97701 1.17564 0.87105 0.93839 0.95578 1.43238 1.18810 1.58358 1.09410 1.20988 0.89067 0.78274 0.82620 1.90742 1.50830 1.50164 1.45952 1.19655 0.86536 0.81208 0.85302 1.90732 1.50820 1.53710 1.46122 1.46509 1.19428 1.59669 1.05980 1.19000 0.77307 0.90888 0.96814 0.92743 1.22101 1.03559 0.98191 0.96855 1.21226 1.03513 1.36287 0.96390 0.91677 1.24885 0.95856 0.94543 0.98371 1.69898 1.09386 1.36500 1.36234 0.86333 0.78506 0.78220 0.83725 1.19610 1.20797 1.20802 1.20568 0.96029 0.95327 1.00678 1.20170 0.94530 0.97077 0.95765 1.21011 0.92406 0.98661 0.99380 0.89529 0.93945 0.93848 0.89269 0.90747 0.85749 0.85137 0.73820 0.76304 0.96457 0.88684 0.95082 0.92484 0.84585 0.88775 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.89 101.05 1.10 1.27 16 2 O -0.38 -3.38 10.43 -35.23 -0.37 -3.74 16 3 C 0.09 0.74 3.52 -25.32 -0.09 0.66 16 4 H 0.08 0.58 7.89 -51.93 -0.41 0.17 16 5 C -0.10 -0.81 6.52 -26.84 -0.17 -0.99 16 6 C -0.12 -1.18 6.14 -104.14 -0.64 -1.82 16 7 C -0.09 -0.82 10.03 -39.56 -0.40 -1.22 16 8 C -0.14 -1.50 9.97 -39.42 -0.39 -1.89 16 9 C 0.15 2.00 6.27 -83.79 -0.53 1.48 16 10 N -0.65 -9.07 5.32 -10.32 -0.05 -9.12 16 11 C 0.51 8.61 7.62 -11.63 -0.09 8.52 16 12 O -0.50 -9.14 14.16 5.47 0.08 -9.06 16 13 C 0.49 9.83 7.85 -11.63 -0.09 9.74 16 14 O -0.54 -11.70 16.15 5.49 0.09 -11.61 16 15 N -0.67 -14.19 5.06 -55.40 -0.28 -14.47 16 16 C 0.26 6.51 2.56 -69.08 -0.18 6.33 16 17 H 0.05 1.53 7.58 -51.93 -0.39 1.14 16 18 C -0.15 -3.59 9.26 37.16 0.34 -3.25 16 19 C -0.54 -14.05 8.73 -34.44 -0.30 -14.35 16 20 H 0.07 1.66 7.74 -52.49 -0.41 1.25 16 21 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 22 N -0.88 -24.30 11.32 55.43 0.63 -23.67 16 23 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C -0.11 -1.43 8.66 -39.33 -0.34 -1.77 16 28 C -0.07 -0.87 6.13 -104.22 -0.64 -1.51 16 29 C -0.08 -0.76 6.52 -26.84 -0.17 -0.94 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.04 0.22 8.11 -51.93 -0.42 -0.21 16 33 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.42 5.20 8.30 -40.82 -0.34 4.86 16 38 H 0.40 7.98 8.01 -40.82 -0.33 7.65 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.14 2.02 6.41 -52.49 -0.34 1.69 16 44 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 378.85 15.07 5.71 5.71 Total: -1.00 -30.30 378.85 -8.21 -38.51 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -6.31 Total: 10.07 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -2.68 Total: 1.94 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.29 Total: -47.26 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.20 Total: -24.42 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.30 -8.21 -38.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783939263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.855 kcal (2) G-P(sol) polarization free energy of solvation -30.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds