Wall clock time and date at job start Tue Mar 31 2020 18:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42893 * 114.00058 * 2 1 4 4 H 1.08993 * 110.88370 * 327.94266 * 3 2 1 5 5 C 1.54344 * 110.82259 * 91.45544 * 3 2 1 6 6 C 1.51387 * 105.18038 * 144.60036 * 5 3 2 7 7 C 1.38579 * 130.30270 * 163.07888 * 6 5 3 8 8 C 1.37949 * 120.32136 * 180.17684 * 7 6 5 9 9 C 1.38946 * 119.85699 * 359.51914 * 8 7 6 10 10 N 1.39727 * 120.11672 * 180.25548 * 9 8 7 11 11 C 1.34774 * 120.00401 * 213.33336 * 10 9 8 12 12 O 1.21382 * 119.99482 * 5.27942 * 11 10 9 13 13 C 1.49349 * 120.00366 * 185.27100 * 11 10 9 14 14 O 1.21360 * 120.00038 * 0.02562 * 13 11 10 15 15 N 1.34781 * 120.00095 * 180.02562 * 13 11 10 16 16 C 1.46494 * 119.99715 * 180.02562 * 15 13 11 17 17 H 1.08995 * 109.47503 * 35.00194 * 16 15 13 18 18 C 1.53003 * 109.47144 * 274.99529 * 16 15 13 19 19 C 1.50706 * 109.47106 * 155.00107 * 16 15 13 20 20 H 1.08001 * 119.99927 * 0.02562 * 19 16 15 21 21 C 1.37876 * 120.00269 * 179.97438 * 19 16 15 22 22 N 1.31514 * 120.00032 * 0.02562 * 21 19 16 23 23 Si 1.86802 * 119.99968 * 179.97438 * 21 19 16 24 24 H 1.48494 * 109.47350 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46730 * 120.00582 * 23 21 19 26 26 H 1.48501 * 109.47179 * 240.00206 * 23 21 19 27 27 C 1.38795 * 119.77123 * 0.23135 * 9 8 7 28 28 C 1.38293 * 109.73414 * 342.80075 * 6 5 3 29 29 C 1.51382 * 109.75160 * 359.97438 * 28 6 5 30 30 H 1.09001 * 109.47393 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47069 * 300.00177 * 1 2 3 32 32 H 1.08996 * 109.47101 * 59.99952 * 1 2 3 33 33 H 1.09003 * 110.30131 * 25.67493 * 5 3 2 34 34 H 1.09001 * 110.29906 * 263.53327 * 5 3 2 35 35 H 1.08004 * 119.84045 * 359.97438 * 7 6 5 36 36 H 1.08001 * 120.07371 * 179.77542 * 8 7 6 37 37 H 0.96999 * 119.99970 * 33.32967 * 10 9 8 38 38 H 0.96999 * 119.99726 * 0.02562 * 15 13 11 39 39 H 1.09002 * 109.46824 * 60.00558 * 18 16 15 40 40 H 1.09002 * 109.47417 * 180.02562 * 18 16 15 41 41 H 1.09003 * 109.47244 * 300.00482 * 18 16 15 42 42 H 0.96996 * 120.00516 * 179.97438 * 22 21 19 43 43 H 1.08002 * 119.91773 * 179.97438 * 27 9 8 44 44 H 1.09004 * 110.31045 * 258.28139 * 29 28 6 45 45 H 1.09004 * 110.39171 * 136.16867 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3798 2.0114 -0.5405 5 6 2.2668 1.7917 1.4422 6 6 3.5486 2.5938 1.3679 7 6 4.0868 3.5082 2.2593 8 6 5.2853 4.1313 1.9793 9 6 5.9614 3.8334 0.8025 10 7 7.1783 4.4573 0.5160 11 6 7.5082 4.7370 -0.7605 12 8 6.7094 4.5351 -1.6519 13 6 8.8564 5.2954 -1.0783 14 8 9.6552 5.4970 -0.1871 15 7 9.1861 5.5756 -2.3548 16 6 10.5087 6.1228 -2.6664 17 1 11.2486 5.6915 -1.9921 18 6 10.4855 7.6428 -2.4932 19 6 10.8694 5.7850 -4.0902 20 1 10.1819 5.2196 -4.7018 21 6 12.0766 6.1986 -4.6123 22 7 12.9136 6.8875 -3.8677 23 14 12.5239 5.7792 -6.3768 24 1 11.4203 5.0022 -6.9959 25 1 12.7377 7.0324 -7.1444 26 1 13.7692 4.9703 -6.3929 27 6 5.4240 2.9136 -0.0872 28 6 4.2190 2.2952 0.1957 29 6 3.4335 1.2719 -0.5965 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.3915 0.9406 2.1117 34 1 1.4449 2.4226 1.7804 35 1 3.5637 3.7366 3.1762 36 1 5.6992 4.8460 2.6752 37 1 7.7858 4.6893 1.2358 38 1 8.5475 5.4148 -3.0670 39 1 10.2247 7.8872 -1.4635 40 1 11.4696 8.0501 -2.7256 41 1 9.7457 8.0741 -3.1676 42 1 13.7631 7.1782 -4.2348 43 1 5.9473 2.6806 -1.0028 44 1 3.8719 0.2814 -0.4748 45 1 3.4076 1.5464 -1.6511 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783939263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:32 Heat of formation + Delta-G solvation = -108.222618 kcal Electronic energy + Delta-G solvation = -27354.781675 eV Core-core repulsion = 23336.372446 eV Total energy + Delta-G solvation = -4018.409229 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.19252 -41.09032 -39.85653 -38.72294 -37.16554 -36.57249 -34.55660 -34.20294 -32.21041 -31.11312 -29.49029 -28.32401 -27.39493 -27.22080 -25.96553 -23.88316 -22.74794 -21.87549 -21.81312 -21.26264 -20.09486 -18.40967 -18.17854 -17.85477 -17.41922 -17.25699 -16.90278 -16.69048 -16.57922 -15.94390 -15.56612 -15.53333 -15.10339 -15.01432 -14.55123 -14.52272 -14.43562 -14.20840 -13.81986 -13.79572 -13.51907 -13.10667 -12.96600 -12.92409 -12.76668 -12.67318 -12.55768 -12.41754 -12.32005 -12.14640 -12.01974 -11.84072 -11.22371 -11.16632 -10.71457 -10.62168 -10.57433 -10.01563 -9.76873 -9.07060 -8.21944 -6.39127 -0.10036 0.35880 0.57930 1.27731 1.43517 1.45773 1.57493 2.08693 2.37520 2.64842 2.71555 2.77538 3.08886 3.35514 3.46984 3.59896 4.00461 4.02484 4.05368 4.24891 4.33983 4.45898 4.55801 4.60196 4.64094 4.68043 4.75290 4.80874 4.86337 4.86851 4.91998 4.96510 4.99604 5.06601 5.19662 5.25570 5.27996 5.33742 5.42778 5.57838 5.60731 5.74154 5.93108 5.99998 6.01748 6.26212 6.50418 6.62816 6.74678 7.03260 7.32970 8.84426 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019891 B = 0.002156 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.304729 B =12985.796677 C =14166.966671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.399 6.399 3 C 0.091 3.909 4 H 0.087 0.913 5 C -0.094 4.094 6 C -0.111 4.111 7 C -0.082 4.082 8 C -0.134 4.134 9 C 0.126 3.874 10 N -0.634 5.634 11 C 0.517 3.483 12 O -0.518 6.518 13 C 0.496 3.504 14 O -0.556 6.556 15 N -0.670 5.670 16 C 0.267 3.733 17 H 0.016 0.984 18 C -0.136 4.136 19 C -0.552 4.552 20 H 0.070 0.930 21 C 0.019 3.981 22 N -0.912 5.912 23 Si 0.973 3.027 24 H -0.265 1.265 25 H -0.277 1.277 26 H -0.281 1.281 27 C -0.126 4.126 28 C -0.089 4.089 29 C -0.081 4.081 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.431 0.569 38 H 0.410 0.590 39 H 0.021 0.979 40 H 0.074 0.926 41 H 0.040 0.960 42 H 0.268 0.732 43 H 0.113 0.887 44 H 0.089 0.911 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.891 -9.702 12.224 29.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.318 6.318 3 C 0.033 3.967 4 H 0.105 0.895 5 C -0.131 4.131 6 C -0.111 4.111 7 C -0.100 4.100 8 C -0.154 4.154 9 C 0.032 3.968 10 N -0.281 5.281 11 C 0.299 3.701 12 O -0.393 6.393 13 C 0.276 3.724 14 O -0.436 6.436 15 N -0.319 5.319 16 C 0.165 3.835 17 H 0.034 0.966 18 C -0.195 4.195 19 C -0.590 4.590 20 H 0.088 0.912 21 C -0.182 4.182 22 N -0.550 5.550 23 Si 0.797 3.203 24 H -0.189 1.189 25 H -0.202 1.202 26 H -0.207 1.207 27 C -0.147 4.147 28 C -0.090 4.090 29 C -0.118 4.118 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.177 0.823 36 H 0.173 0.827 37 H 0.271 0.729 38 H 0.246 0.754 39 H 0.040 0.960 40 H 0.093 0.907 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.131 0.869 44 H 0.107 0.893 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -24.528 -9.761 12.156 29.063 hybrid contribution 0.816 0.261 -0.990 1.309 sum -23.712 -9.500 11.166 27.878 Atomic orbital electron populations 1.22999 0.79277 1.03933 1.01107 1.87898 1.21632 1.27237 1.95011 1.22734 0.93616 0.84923 0.95435 0.89463 1.21526 0.94420 0.99285 0.97912 1.20737 0.97711 0.98090 0.94600 1.20734 0.94528 0.94929 0.99788 1.21115 0.95597 1.01962 0.96700 1.17776 0.87133 0.94855 0.97003 1.43056 1.19452 1.57343 1.08248 1.20241 0.87504 0.78668 0.83714 1.90745 1.50741 1.51217 1.46635 1.20108 0.87607 0.80272 0.84424 1.90711 1.51964 1.54366 1.46592 1.46271 1.18433 1.60199 1.07003 1.18651 0.78151 0.91125 0.95622 0.96622 1.21926 1.02573 0.97708 0.97269 1.21506 1.03987 1.36516 0.96951 0.91221 1.25734 0.95725 0.94310 1.02401 1.70018 1.09760 1.37197 1.38002 0.85286 0.78153 0.78072 0.78776 1.18872 1.20205 1.20669 1.20532 0.97078 0.96716 1.00340 1.20357 0.94161 0.97480 0.96973 1.21052 0.93514 0.97924 0.99298 0.88542 0.92622 0.93174 0.88858 0.88396 0.82309 0.82708 0.72932 0.75430 0.95999 0.90734 0.94136 0.92281 0.86945 0.89279 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.89 113.37 1.23 1.44 16 2 O -0.40 -6.42 10.43 -148.98 -1.55 -7.98 16 3 C 0.09 1.37 3.52 31.51 0.11 1.49 16 4 H 0.09 1.12 7.89 -2.39 -0.02 1.10 16 5 C -0.09 -1.25 6.52 30.52 0.20 -1.05 16 6 C -0.11 -2.00 6.14 -19.55 -0.12 -2.12 16 7 C -0.08 -1.29 10.03 22.28 0.22 -1.07 16 8 C -0.13 -2.51 9.97 22.37 0.22 -2.28 16 9 C 0.13 3.20 6.27 38.19 0.24 3.44 16 10 N -0.63 -17.53 5.32 -304.92 -1.62 -19.16 16 11 C 0.52 17.78 7.62 87.24 0.66 18.44 16 12 O -0.52 -19.18 14.16 -3.35 -0.05 -19.23 16 13 C 0.50 20.15 7.85 87.24 0.68 20.84 16 14 O -0.56 -24.91 16.15 -3.28 -0.05 -24.96 16 15 N -0.67 -29.16 5.06 -447.53 -2.27 -31.43 16 16 C 0.27 13.69 2.56 44.25 0.11 13.81 16 17 H 0.02 0.93 7.58 -2.39 -0.02 0.91 16 18 C -0.14 -6.72 9.26 71.98 0.67 -6.05 16 19 C -0.55 -29.29 8.73 25.60 0.22 -29.07 16 20 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 21 C 0.02 1.01 5.30 84.65 0.45 1.46 16 22 N -0.91 -51.02 11.32 21.45 0.24 -50.78 16 23 Si 0.97 41.99 29.54 68.60 2.03 44.02 16 24 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 26 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 27 C -0.13 -3.47 8.66 22.43 0.19 -3.28 16 28 C -0.09 -2.02 6.13 -19.60 -0.12 -2.14 16 29 C -0.08 -1.56 6.52 30.53 0.20 -1.36 16 30 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.05 0.39 8.11 -2.39 -0.02 0.37 16 33 H 0.09 1.22 8.10 -2.39 -0.02 1.20 16 34 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 36 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.43 10.37 8.30 -92.71 -0.77 9.60 16 38 H 0.41 16.55 8.01 -92.71 -0.74 15.81 16 39 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 4.00 6.07 -2.39 -0.01 3.98 16 41 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 43 H 0.11 3.55 6.41 -2.91 -0.02 3.53 16 44 H 0.09 1.77 8.10 -2.39 -0.02 1.75 16 45 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -66.14 378.85 1.43 -64.71 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: -0.48 Total: 32.31 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 5.19 Total: 12.49 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -3.65 Total: -101.36 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -1.65 Total: -52.17 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -66.14 1.43 -64.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783939263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.516 kcal (2) G-P(sol) polarization free energy of solvation -66.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds