Wall clock time and date at job start Tue Mar 31 2020 17:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.99525 * 2 1 4 4 C 1.54316 * 109.77108 * 121.15047 * 2 1 3 5 5 C 1.55154 * 102.86258 * 141.88711 * 4 2 1 6 6 C 1.54910 * 101.58081 * 324.30597 * 5 4 2 7 7 H 1.09005 * 110.36384 * 278.16566 * 6 5 4 8 8 C 1.52998 * 110.46089 * 155.89447 * 6 5 4 9 9 N 1.47017 * 109.88388 * 238.90041 * 2 1 3 10 10 C 1.34776 * 125.64860 * 61.67930 * 9 2 1 11 11 O 1.21362 * 120.00049 * 185.88708 * 10 9 2 12 12 C 1.49352 * 119.99944 * 5.89461 * 10 9 2 13 13 O 1.21367 * 120.00031 * 5.90854 * 12 10 9 14 14 N 1.34786 * 119.99837 * 185.91294 * 12 10 9 15 15 C 1.39725 * 119.99606 * 175.30318 * 14 12 10 16 16 C 1.39024 * 120.04197 * 35.09093 * 15 14 12 17 17 C 1.38140 * 120.06006 * 180.02562 * 16 15 14 18 18 C 1.38183 * 120.14244 * 359.67582 * 17 16 15 19 19 C 1.38916 * 120.08177 * 0.60047 * 18 17 16 20 20 O 1.35756 * 120.02920 * 179.70095 * 19 18 17 21 21 C 1.34833 * 116.99987 * 185.00818 * 20 19 18 22 22 H 1.08002 * 119.99987 * 354.96541 * 21 20 19 23 23 C 1.38648 * 120.00066 * 174.96819 * 21 20 19 24 24 N 1.31560 * 119.99997 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00180 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47269 * 180.02562 * 25 23 21 27 27 H 1.48503 * 109.47021 * 300.00310 * 25 23 21 28 28 H 1.48499 * 109.46925 * 59.99598 * 25 23 21 29 29 C 1.38755 * 119.94133 * 359.42272 * 19 18 17 30 30 H 1.08997 * 109.46922 * 186.41841 * 1 2 3 31 31 H 1.08996 * 109.47420 * 306.42247 * 1 2 3 32 32 H 1.09003 * 109.47046 * 66.42216 * 1 2 3 33 33 H 1.08996 * 110.92728 * 23.47575 * 4 2 1 34 34 H 1.09001 * 110.74100 * 260.21853 * 4 2 1 35 35 H 1.08998 * 111.00647 * 206.22764 * 5 4 2 36 36 H 1.09001 * 111.03950 * 82.38983 * 5 4 2 37 37 H 1.08998 * 109.47108 * 304.53514 * 8 6 5 38 38 H 1.09009 * 109.47289 * 64.53294 * 8 6 5 39 39 H 1.09001 * 109.47527 * 184.53423 * 8 6 5 40 40 H 0.96994 * 120.00036 * 355.30935 * 14 12 10 41 41 H 1.07998 * 119.96687 * 0.02562 * 16 15 14 42 42 H 1.08001 * 119.92778 * 179.97438 * 17 16 15 43 43 H 1.08000 * 119.95743 * 180.32045 * 18 17 16 44 44 H 0.97004 * 120.00081 * 180.02562 * 24 23 21 45 45 H 1.08000 * 120.07840 * 180.26006 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0520 -0.7512 1.2428 5 6 3.2888 -1.5101 0.6935 6 6 2.8191 -1.8763 -0.7365 7 1 2.1972 -2.7712 -0.7140 8 6 4.0228 -2.0887 -1.6568 9 7 2.0301 -0.7141 -1.1838 10 6 1.8086 -0.3614 -2.4656 11 8 2.1805 -1.0842 -3.3668 12 6 1.1058 0.9191 -2.7770 13 8 0.8296 1.6926 -1.8835 14 7 0.7782 1.2156 -4.0504 15 6 0.0349 2.3650 -4.3309 16 6 0.2241 3.5175 -3.5768 17 6 -0.5110 4.6539 -3.8534 18 6 -1.4313 4.6512 -4.8841 19 6 -1.6293 3.5011 -5.6378 20 8 -2.5382 3.4978 -6.6462 21 6 -2.7562 2.3224 -7.2699 22 1 -2.1606 1.4578 -7.0162 23 6 -3.7448 2.2236 -8.2369 24 7 -4.4699 3.2769 -8.5464 25 14 -4.0464 0.5954 -9.1015 26 1 -5.1481 0.7535 -10.0844 27 1 -2.8101 0.1736 -9.8078 28 1 -4.4201 -0.4352 -8.0997 29 6 -0.8932 2.3576 -5.3626 30 1 -0.3633 -1.0212 0.1149 31 1 -0.3634 0.6101 0.8269 32 1 -0.3633 0.4111 -0.9419 33 1 1.3050 -1.4512 1.6169 34 1 2.3456 -0.0491 2.0232 35 1 3.4896 -2.4064 1.2803 36 1 4.1642 -0.8614 0.6630 37 1 4.6555 -1.2013 -1.6382 38 1 4.5953 -2.9504 -1.3133 39 1 3.6752 -2.2657 -2.6747 40 1 1.0583 0.6311 -4.7719 41 1 0.9464 3.5243 -2.7739 42 1 -0.3626 5.5480 -3.2660 43 1 -2.0007 5.5429 -5.1012 44 1 -5.1618 3.2077 -9.2227 45 1 -1.0423 1.4635 -5.9498 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785232490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:51 Heat of formation + Delta-G solvation = -53.768112 kcal Electronic energy + Delta-G solvation = -28556.806113 eV Core-core repulsion = 24540.758208 eV Total energy + Delta-G solvation = -4016.047905 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.25237 -39.73998 -38.60360 -37.86529 -36.52414 -34.38733 -32.93991 -32.26203 -31.94384 -29.55783 -28.77362 -28.56494 -25.66856 -25.11744 -24.28803 -22.67416 -21.88704 -21.50484 -20.68476 -19.46729 -18.04653 -17.85490 -17.22053 -16.89250 -16.56363 -15.69797 -15.55390 -15.07178 -14.94850 -14.39579 -14.29255 -14.16598 -13.85642 -13.69327 -13.59662 -13.54025 -13.25804 -13.03362 -12.93413 -12.41950 -12.30811 -12.09118 -11.84206 -11.76042 -11.57594 -11.54013 -11.19504 -11.10072 -11.06698 -10.89960 -10.85799 -10.73212 -10.48479 -9.81624 -9.56343 -9.32173 -8.97464 -8.82955 -7.82513 -7.23288 -6.46816 -4.06876 1.23749 2.03901 2.22680 2.37263 3.12505 3.13269 3.16323 3.20059 3.37644 3.95221 4.12916 4.18150 4.41067 4.49118 4.55042 4.80777 4.91307 5.01995 5.06079 5.19011 5.25098 5.26858 5.35595 5.41061 5.48050 5.58832 5.63076 5.67473 5.82438 5.87608 5.91712 5.94950 5.97029 6.11874 6.17553 6.20851 6.26438 6.54997 6.78549 6.88379 7.03027 7.09379 7.23781 7.36892 7.41588 7.68028 7.74495 7.96655 8.04831 8.98467 9.66907 10.70864 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016048 B = 0.002869 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.292877 B = 9756.791916 C =10730.272556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.131 3.869 3 H 0.094 0.906 4 C -0.131 4.131 5 C -0.130 4.130 6 C 0.133 3.867 7 H 0.080 0.920 8 C -0.170 4.170 9 N -0.586 5.586 10 C 0.527 3.473 11 O -0.518 6.518 12 C 0.502 3.498 13 O -0.492 6.492 14 N -0.636 5.636 15 C 0.172 3.828 16 C -0.203 4.203 17 C -0.064 4.064 18 C -0.195 4.195 19 C 0.167 3.833 20 O -0.174 6.174 21 C -0.394 4.394 22 H 0.091 0.909 23 C 0.041 3.959 24 N -0.862 5.862 25 Si 0.940 3.060 26 H -0.277 1.277 27 H -0.269 1.269 28 H -0.270 1.270 29 C -0.250 4.250 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.418 0.582 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.271 0.729 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.325 -9.121 17.899 24.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.028 3.972 3 H 0.112 0.888 4 C -0.169 4.169 5 C -0.168 4.168 6 C 0.031 3.969 7 H 0.098 0.902 8 C -0.227 4.227 9 N -0.321 5.321 10 C 0.310 3.690 11 O -0.394 6.394 12 C 0.284 3.716 13 O -0.366 6.366 14 N -0.282 5.282 15 C 0.079 3.921 16 C -0.224 4.224 17 C -0.083 4.083 18 C -0.215 4.215 19 C 0.113 3.887 20 O -0.077 6.077 21 C -0.470 4.470 22 H 0.108 0.892 23 C -0.163 4.163 24 N -0.496 5.496 25 Si 0.764 3.236 26 H -0.202 1.202 27 H -0.194 1.194 28 H -0.195 1.195 29 C -0.272 4.272 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.255 0.745 41 H 0.142 0.858 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.081 0.919 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 13.973 -8.741 17.718 24.198 hybrid contribution -0.081 -1.194 -0.774 1.425 sum 13.892 -9.935 16.944 24.058 Atomic orbital electron populations 1.22286 0.94040 1.01473 1.04276 1.21816 0.95209 0.96849 0.83325 0.88835 1.22784 0.97627 0.99710 0.96746 1.22883 0.98232 1.01189 0.94495 1.22016 0.92610 0.88374 0.93946 0.90180 1.22195 0.96626 1.01895 1.02031 1.48430 1.50696 1.28217 1.04775 1.19745 0.80661 0.86459 0.82138 1.90713 1.51032 1.52671 1.44997 1.20011 0.80737 0.87300 0.83553 1.90740 1.51201 1.49392 1.45302 1.43119 1.51872 1.25085 1.08132 1.17413 0.92757 0.84968 0.96967 1.20669 1.05619 0.91970 1.04142 1.20546 0.94829 0.97066 0.95894 1.20301 1.04259 0.97801 0.99096 1.19051 0.89188 0.92551 0.87936 1.84009 1.50341 1.34069 1.39282 1.21246 1.19297 0.87116 1.19361 0.89202 1.25272 0.95052 0.99187 0.96836 1.70027 1.20154 1.28959 1.30487 0.85801 0.78553 0.80182 0.79042 1.20234 1.19444 1.19495 1.20848 1.01495 1.00954 1.03877 0.93060 0.91231 0.90781 0.90289 0.89738 0.89617 0.90295 0.92506 0.91619 0.89397 0.74520 0.85776 0.86474 0.86258 0.91916 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 8.74 37.16 0.32 -1.43 16 2 C 0.13 1.28 2.80 -66.96 -0.19 1.10 16 3 H 0.09 1.02 7.16 -51.93 -0.37 0.64 16 4 C -0.13 -0.85 6.47 -24.90 -0.16 -1.01 16 5 C -0.13 -0.79 6.50 -24.58 -0.16 -0.95 16 6 C 0.13 1.17 3.74 -66.42 -0.25 0.92 16 7 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 8 C -0.17 -1.53 8.83 37.16 0.33 -1.20 16 9 N -0.59 -6.61 2.98 -156.14 -0.47 -7.08 16 10 C 0.53 7.34 7.40 -11.63 -0.09 7.25 16 11 O -0.52 -7.92 14.30 5.49 0.08 -7.84 16 12 C 0.50 7.71 6.91 -11.63 -0.08 7.63 16 13 O -0.49 -7.90 9.65 5.48 0.05 -7.85 16 14 N -0.64 -10.30 5.32 -10.31 -0.05 -10.36 16 15 C 0.17 3.26 6.29 -83.77 -0.53 2.73 16 16 C -0.20 -3.75 8.69 -39.33 -0.34 -4.09 16 17 C -0.06 -1.17 10.03 -39.64 -0.40 -1.57 16 18 C -0.19 -4.08 9.99 -39.35 -0.39 -4.48 16 19 C 0.17 4.00 6.65 -39.14 -0.26 3.74 16 20 O -0.17 -4.90 9.76 0.02 0.00 -4.90 16 21 C -0.39 -10.90 9.49 30.88 0.29 -10.61 16 22 H 0.09 2.30 5.20 -52.49 -0.27 2.02 16 23 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 24 N -0.86 -25.11 13.67 55.48 0.76 -24.35 16 25 Si 0.94 20.46 29.55 -169.99 -5.02 15.44 16 26 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 27 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 28 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 29 C -0.25 -5.40 9.08 -39.19 -0.36 -5.75 16 30 H 0.05 0.51 8.01 -51.93 -0.42 0.09 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.03 5.21 -51.93 -0.27 0.76 16 33 H 0.08 0.46 7.77 -51.93 -0.40 0.06 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.48 8.05 -51.93 -0.42 0.06 16 37 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 38 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.09 1.02 5.86 -51.93 -0.30 0.71 16 40 H 0.42 6.13 8.30 -40.82 -0.34 5.79 16 41 H 0.12 2.18 6.22 -52.49 -0.33 1.86 16 42 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 43 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 44 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.13 2.82 5.63 -52.49 -0.30 2.52 16 LS Contribution 364.34 15.07 5.49 5.49 Total: -1.00 -31.47 364.34 -7.45 -38.91 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -5.93 Total: 9.22 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -2.35 Total: -6.70 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 0.24 Total: -41.78 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: 0.13 Total: -20.58 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.47 -7.45 -38.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785232490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.856 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds