Wall clock time and date at job start Tue Mar 31 2020 17:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 110.41736 * 2 1 4 4 C 1.54697 * 110.39068 * 237.84921 * 2 1 3 5 5 C 1.55152 * 101.67751 * 204.36736 * 4 2 1 6 6 C 1.54329 * 102.94218 * 35.33519 * 5 4 2 7 7 H 1.09003 * 110.00650 * 97.29793 * 6 5 4 8 8 C 1.52997 * 109.88057 * 218.38960 * 6 5 4 9 9 N 1.47019 * 107.27334 * 337.81064 * 6 5 4 10 10 C 1.34769 * 125.65265 * 178.90595 * 9 6 5 11 11 O 1.21356 * 120.00371 * 174.37772 * 10 9 6 12 12 C 1.49351 * 119.99803 * 354.38004 * 10 9 6 13 13 O 1.21382 * 120.00228 * 353.66789 * 12 10 9 14 14 N 1.34779 * 120.00246 * 173.66659 * 12 10 9 15 15 C 1.39724 * 120.00302 * 173.80025 * 14 12 10 16 16 C 1.39018 * 120.04295 * 148.84433 * 15 14 12 17 17 C 1.38149 * 120.05859 * 179.79102 * 16 15 14 18 18 C 1.38176 * 120.14465 * 0.46267 * 17 16 15 19 19 C 1.38923 * 120.08387 * 359.79350 * 18 17 16 20 20 O 1.35749 * 120.03019 * 179.97438 * 19 18 17 21 21 C 1.34831 * 117.00330 * 6.62618 * 20 19 18 22 22 H 1.08007 * 119.99460 * 5.85650 * 21 20 19 23 23 C 1.38653 * 120.00297 * 185.85859 * 21 20 19 24 24 N 1.31556 * 120.00014 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99937 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47369 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47197 * 119.99973 * 25 23 21 28 28 H 1.48496 * 109.47126 * 239.99932 * 25 23 21 29 29 C 1.38757 * 119.93597 * 359.97438 * 19 18 17 30 30 H 1.09000 * 109.46845 * 304.18534 * 1 2 3 31 31 H 1.09002 * 109.47121 * 64.18260 * 1 2 3 32 32 H 1.08996 * 109.47514 * 184.18151 * 1 2 3 33 33 H 1.08999 * 111.09845 * 86.19497 * 4 2 1 34 34 H 1.09003 * 110.84795 * 322.42681 * 4 2 1 35 35 H 1.08994 * 110.71833 * 276.97402 * 5 4 2 36 36 H 1.09002 * 110.87346 * 153.76806 * 5 4 2 37 37 H 1.09003 * 109.46786 * 180.78240 * 8 6 5 38 38 H 1.08999 * 109.47243 * 300.77557 * 8 6 5 39 39 H 1.08995 * 109.47104 * 60.78140 * 8 6 5 40 40 H 0.97000 * 120.00068 * 354.07749 * 14 12 10 41 41 H 1.07993 * 119.96928 * 0.02562 * 16 15 14 42 42 H 1.07999 * 119.92396 * 180.23259 * 17 16 15 43 43 H 1.07999 * 119.95595 * 179.76329 * 18 17 16 44 44 H 0.96993 * 120.00139 * 179.97438 * 24 23 21 45 45 H 1.07997 * 120.07136 * 180.02562 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0690 -0.7716 -1.2277 5 6 3.4757 -1.2024 -0.7350 6 6 3.2461 -1.4813 0.7654 7 1 3.0945 -2.5485 0.9275 8 6 4.4513 -0.9982 1.5748 9 7 2.0430 -0.7385 1.1683 10 6 1.4963 -0.7374 2.4002 11 8 0.5597 -0.0066 2.6477 12 6 2.0433 -1.6355 3.4607 13 8 2.9022 -2.4477 3.1847 14 7 1.5834 -1.5443 4.7243 15 6 1.9984 -2.4678 5.6872 16 6 2.1016 -2.0850 7.0197 17 6 2.5077 -2.9989 7.9727 18 6 2.8217 -4.2930 7.6038 19 6 2.7258 -4.6805 6.2732 20 8 3.0350 -5.9520 5.9118 21 6 3.2950 -6.8249 6.9060 22 1 3.1602 -6.5267 7.9353 23 6 3.7354 -8.1051 6.6071 24 7 3.8991 -8.4684 5.3533 25 14 4.0949 -9.3146 7.9845 26 1 3.8317 -8.6660 9.2941 27 1 3.2204 -10.5059 7.8381 28 1 5.5178 -9.7338 7.9163 29 6 2.3136 -3.7667 5.3138 30 1 -0.3633 0.5774 0.8501 31 1 -0.3633 0.4476 -0.9251 32 1 -0.3634 -1.0249 0.0749 33 1 2.1424 -0.1208 -2.0989 34 1 1.4474 -1.6407 -1.4431 35 1 4.1959 -0.3957 -0.8715 36 1 3.8076 -2.1048 -1.2486 37 1 4.2881 -1.2109 2.6313 38 1 5.3484 -1.5154 1.2344 39 1 4.5758 0.0755 1.4353 40 1 0.9610 -0.8400 4.9642 41 1 1.8604 -1.0733 7.3106 42 1 2.5836 -2.7003 9.0078 43 1 3.1426 -5.0039 8.3508 44 1 4.2075 -9.3639 5.1441 45 1 2.2378 -4.0657 4.2788 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785232492.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:15 Heat of formation + Delta-G solvation = -53.833324 kcal Electronic energy + Delta-G solvation = -28643.305348 eV Core-core repulsion = 24627.254615 eV Total energy + Delta-G solvation = -4016.050733 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.19163 -39.69284 -38.54672 -37.79477 -36.60803 -34.22880 -32.86637 -32.27073 -31.86388 -29.64940 -28.74838 -28.45190 -25.58291 -25.07919 -24.21518 -22.74080 -21.77434 -21.34907 -20.81492 -19.31620 -18.26235 -17.60305 -17.08117 -16.91055 -16.47197 -15.60008 -15.51351 -15.13675 -14.89252 -14.35209 -14.22979 -14.16766 -13.81248 -13.59345 -13.56945 -13.43935 -13.18871 -12.99984 -12.74188 -12.53368 -12.24141 -12.03340 -11.78285 -11.69446 -11.62060 -11.45085 -11.18428 -11.04609 -10.98078 -10.87859 -10.81185 -10.72564 -10.44354 -9.83168 -9.57218 -9.18973 -8.90646 -8.83704 -7.74922 -7.22287 -6.44457 -4.03625 1.28380 2.11471 2.27879 2.33325 3.12278 3.13944 3.19811 3.25297 3.41803 3.96071 4.19475 4.27696 4.46790 4.56524 4.58209 4.89127 4.99036 5.09559 5.10743 5.27104 5.28072 5.35816 5.43607 5.48203 5.58684 5.59273 5.66304 5.75178 5.79046 5.90056 5.96777 6.02950 6.06214 6.12315 6.22961 6.30512 6.33670 6.55602 6.73222 6.96656 7.03834 7.11859 7.30866 7.40064 7.43502 7.68243 7.78444 8.00075 8.10415 9.00641 9.71071 10.73408 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015772 B = 0.002929 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.866060 B = 9558.795609 C =10693.001286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.133 3.867 3 H 0.080 0.920 4 C -0.131 4.131 5 C -0.130 4.130 6 C 0.128 3.872 7 H 0.097 0.903 8 C -0.167 4.167 9 N -0.585 5.585 10 C 0.528 3.472 11 O -0.522 6.522 12 C 0.497 3.503 13 O -0.478 6.478 14 N -0.638 5.638 15 C 0.173 3.827 16 C -0.232 4.232 17 C -0.057 4.057 18 C -0.242 4.242 19 C 0.168 3.832 20 O -0.173 6.173 21 C -0.391 4.391 22 H 0.093 0.907 23 C 0.039 3.961 24 N -0.860 5.860 25 Si 0.941 3.059 26 H -0.266 1.266 27 H -0.276 1.276 28 H -0.276 1.276 29 C -0.188 4.188 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.049 0.951 40 H 0.417 0.583 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.129 0.871 44 H 0.270 0.730 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.806 16.573 -9.726 19.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.031 3.969 3 H 0.098 0.902 4 C -0.169 4.169 5 C -0.168 4.168 6 C 0.025 3.975 7 H 0.114 0.886 8 C -0.225 4.225 9 N -0.320 5.320 10 C 0.311 3.689 11 O -0.399 6.399 12 C 0.278 3.722 13 O -0.351 6.351 14 N -0.284 5.284 15 C 0.080 3.920 16 C -0.253 4.253 17 C -0.075 4.075 18 C -0.262 4.262 19 C 0.113 3.887 20 O -0.076 6.076 21 C -0.467 4.467 22 H 0.110 0.890 23 C -0.165 4.165 24 N -0.494 5.494 25 Si 0.766 3.234 26 H -0.191 1.191 27 H -0.202 1.202 28 H -0.201 1.201 29 C -0.210 4.210 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.254 0.746 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.147 0.853 44 H 0.080 0.920 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.638 16.052 -10.125 19.161 hybrid contribution -0.027 -0.263 0.858 0.898 sum -2.665 15.790 -9.266 18.501 Atomic orbital electron populations 1.22132 0.93636 1.03173 1.03279 1.21966 0.95344 0.95631 0.83961 0.90240 1.22847 0.96534 1.00762 0.96732 1.22767 0.97189 1.02727 0.94121 1.21861 0.84200 0.97594 0.93847 0.88552 1.22329 0.97143 1.00276 1.02704 1.48461 1.27925 1.47151 1.08415 1.19719 0.83412 0.83210 0.82515 1.90707 1.28309 1.40480 1.80376 1.20077 0.83092 0.85304 0.83707 1.90819 1.28019 1.35702 1.80578 1.43042 1.46121 1.31313 1.07914 1.17169 0.99398 0.87807 0.87602 1.20272 1.13723 0.99773 0.91489 1.20517 0.96459 0.92687 0.97885 1.21217 1.10910 0.97426 0.96624 1.19088 0.91805 0.85939 0.91822 1.84005 1.74493 1.13901 1.35194 1.21388 1.46338 0.91647 0.87362 0.88951 1.25306 0.96329 0.97161 0.97738 1.70056 1.42430 1.19733 1.17197 0.85644 0.78400 0.79697 0.79662 1.19060 1.20151 1.20140 1.20032 1.10007 0.90872 1.00053 0.89935 0.91661 0.92363 0.89611 0.90224 0.90383 0.89588 0.90333 0.91165 0.93166 0.74649 0.87119 0.86843 0.85332 0.92050 0.85105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 8.59 37.16 0.32 -1.26 16 2 C 0.13 1.26 3.73 -66.53 -0.25 1.01 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.13 -0.94 6.50 -24.70 -0.16 -1.10 16 5 C -0.13 -1.03 6.48 -24.90 -0.16 -1.19 16 6 C 0.13 1.45 2.81 -66.95 -0.19 1.27 16 7 H 0.10 1.30 7.15 -51.93 -0.37 0.93 16 8 C -0.17 -1.97 8.76 37.16 0.33 -1.64 16 9 N -0.58 -7.11 2.98 -156.27 -0.47 -7.58 16 10 C 0.53 7.61 7.41 -11.64 -0.09 7.52 16 11 O -0.52 -7.91 14.45 5.49 0.08 -7.83 16 12 C 0.50 8.06 6.94 -11.63 -0.08 7.98 16 13 O -0.48 -8.85 9.63 5.47 0.05 -8.79 16 14 N -0.64 -10.06 5.32 -10.31 -0.05 -10.11 16 15 C 0.17 3.25 6.32 -83.77 -0.53 2.72 16 16 C -0.23 -3.97 9.96 -39.33 -0.39 -4.36 16 17 C -0.06 -1.02 10.03 -39.64 -0.40 -1.42 16 18 C -0.24 -5.25 9.12 -39.35 -0.36 -5.61 16 19 C 0.17 4.16 6.64 -39.14 -0.26 3.90 16 20 O -0.17 -5.02 9.76 0.05 0.00 -5.02 16 21 C -0.39 -10.97 9.43 30.89 0.29 -10.68 16 22 H 0.09 2.39 5.32 -52.48 -0.28 2.11 16 23 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 24 N -0.86 -25.37 13.67 55.48 0.76 -24.61 16 25 Si 0.94 20.52 29.55 -169.99 -5.02 15.50 16 26 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 27 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 28 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 29 C -0.19 -4.24 8.60 -39.19 -0.34 -4.58 16 30 H 0.08 0.95 6.25 -51.93 -0.32 0.63 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.60 8.05 -51.93 -0.42 0.18 16 35 H 0.08 0.53 7.85 -51.93 -0.41 0.13 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 1.16 5.12 -51.93 -0.27 0.89 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.42 5.47 8.32 -40.82 -0.34 5.13 16 41 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.13 2.77 5.73 -52.49 -0.30 2.47 16 44 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16 45 H 0.13 3.10 6.26 -52.49 -0.33 2.77 16 LS Contribution 364.97 15.07 5.50 5.50 Total: -1.00 -32.36 364.97 -7.49 -39.85 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -5.98 Total: 9.56 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -2.36 Total: -6.45 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.24 Total: -42.31 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: 0.13 Total: -21.65 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.36 -7.49 -39.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785232492.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.984 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds