Wall clock time and date at job start Tue Mar 31 2020 17:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 110.41736 * 2 1 4 4 C 1.54697 * 110.39068 * 237.84921 * 2 1 3 5 5 C 1.55152 * 101.67751 * 204.36736 * 4 2 1 6 6 C 1.54329 * 102.94218 * 35.33519 * 5 4 2 7 7 H 1.09003 * 110.00650 * 97.29793 * 6 5 4 8 8 C 1.52997 * 109.88057 * 218.38960 * 6 5 4 9 9 N 1.47019 * 107.27334 * 337.81064 * 6 5 4 10 10 C 1.34769 * 125.65265 * 178.90595 * 9 6 5 11 11 O 1.21356 * 120.00371 * 174.37772 * 10 9 6 12 12 C 1.49351 * 119.99803 * 354.38004 * 10 9 6 13 13 O 1.21382 * 120.00228 * 353.66789 * 12 10 9 14 14 N 1.34779 * 120.00246 * 173.66659 * 12 10 9 15 15 C 1.39724 * 120.00302 * 173.80025 * 14 12 10 16 16 C 1.39018 * 120.04295 * 148.84433 * 15 14 12 17 17 C 1.38149 * 120.05859 * 179.79102 * 16 15 14 18 18 C 1.38176 * 120.14465 * 0.46267 * 17 16 15 19 19 C 1.38923 * 120.08387 * 359.79350 * 18 17 16 20 20 O 1.35749 * 120.03019 * 179.97438 * 19 18 17 21 21 C 1.34831 * 117.00330 * 6.62618 * 20 19 18 22 22 H 1.08007 * 119.99460 * 5.85650 * 21 20 19 23 23 C 1.38653 * 120.00297 * 185.85859 * 21 20 19 24 24 N 1.31556 * 120.00014 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99937 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47369 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47197 * 119.99973 * 25 23 21 28 28 H 1.48496 * 109.47126 * 239.99932 * 25 23 21 29 29 C 1.38757 * 119.93597 * 359.97438 * 19 18 17 30 30 H 1.09000 * 109.46845 * 304.18534 * 1 2 3 31 31 H 1.09002 * 109.47121 * 64.18260 * 1 2 3 32 32 H 1.08996 * 109.47514 * 184.18151 * 1 2 3 33 33 H 1.08999 * 111.09845 * 86.19497 * 4 2 1 34 34 H 1.09003 * 110.84795 * 322.42681 * 4 2 1 35 35 H 1.08994 * 110.71833 * 276.97402 * 5 4 2 36 36 H 1.09002 * 110.87346 * 153.76806 * 5 4 2 37 37 H 1.09003 * 109.46786 * 180.78240 * 8 6 5 38 38 H 1.08999 * 109.47243 * 300.77557 * 8 6 5 39 39 H 1.08995 * 109.47104 * 60.78140 * 8 6 5 40 40 H 0.97000 * 120.00068 * 354.07749 * 14 12 10 41 41 H 1.07993 * 119.96928 * 0.02562 * 16 15 14 42 42 H 1.07999 * 119.92396 * 180.23259 * 17 16 15 43 43 H 1.07999 * 119.95595 * 179.76329 * 18 17 16 44 44 H 0.96993 * 120.00139 * 179.97438 * 24 23 21 45 45 H 1.07997 * 120.07136 * 180.02562 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0690 -0.7716 -1.2277 5 6 3.4757 -1.2024 -0.7350 6 6 3.2461 -1.4813 0.7654 7 1 3.0945 -2.5485 0.9275 8 6 4.4513 -0.9982 1.5748 9 7 2.0430 -0.7385 1.1683 10 6 1.4963 -0.7374 2.4002 11 8 0.5597 -0.0066 2.6477 12 6 2.0433 -1.6355 3.4607 13 8 2.9022 -2.4477 3.1847 14 7 1.5834 -1.5443 4.7243 15 6 1.9984 -2.4678 5.6872 16 6 2.1016 -2.0850 7.0197 17 6 2.5077 -2.9989 7.9727 18 6 2.8217 -4.2930 7.6038 19 6 2.7258 -4.6805 6.2732 20 8 3.0350 -5.9520 5.9118 21 6 3.2950 -6.8249 6.9060 22 1 3.1602 -6.5267 7.9353 23 6 3.7354 -8.1051 6.6071 24 7 3.8991 -8.4684 5.3533 25 14 4.0949 -9.3146 7.9845 26 1 3.8317 -8.6660 9.2941 27 1 3.2204 -10.5059 7.8381 28 1 5.5178 -9.7338 7.9163 29 6 2.3136 -3.7667 5.3138 30 1 -0.3633 0.5774 0.8501 31 1 -0.3633 0.4476 -0.9251 32 1 -0.3634 -1.0249 0.0749 33 1 2.1424 -0.1208 -2.0989 34 1 1.4474 -1.6407 -1.4431 35 1 4.1959 -0.3957 -0.8715 36 1 3.8076 -2.1048 -1.2486 37 1 4.2881 -1.2109 2.6313 38 1 5.3484 -1.5154 1.2344 39 1 4.5758 0.0755 1.4353 40 1 0.9610 -0.8400 4.9642 41 1 1.8604 -1.0733 7.3106 42 1 2.5836 -2.7003 9.0078 43 1 3.1426 -5.0039 8.3508 44 1 4.2075 -9.3639 5.1441 45 1 2.2378 -4.0657 4.2788 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785232492.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:13 Heat of formation + Delta-G solvation = -75.571250 kcal Electronic energy + Delta-G solvation = -28644.247975 eV Core-core repulsion = 24627.254615 eV Total energy + Delta-G solvation = -4016.993360 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.39537 -41.06136 -40.11678 -38.87751 -38.27707 -35.71141 -34.27188 -33.72501 -32.76842 -31.31198 -30.29146 -29.38541 -27.41349 -26.50496 -24.99011 -24.09870 -23.27514 -22.49539 -21.97491 -20.55590 -19.98487 -19.11547 -18.49606 -17.99597 -17.60131 -16.99647 -16.92115 -16.73918 -16.29854 -15.98336 -15.72029 -15.53271 -15.07282 -15.04367 -14.62593 -14.40578 -14.27082 -14.21829 -14.03145 -13.83995 -13.56215 -13.27969 -13.10697 -12.99502 -12.80713 -12.68725 -12.59501 -12.41423 -12.33835 -12.08722 -11.83862 -11.69855 -11.64255 -11.39773 -11.23991 -10.78414 -10.56894 -9.91217 -9.40227 -8.92943 -8.47188 -6.16566 -0.05484 0.61329 0.69458 1.10103 1.35518 1.44265 1.54609 1.97821 2.15791 2.29251 2.80416 3.05527 3.15557 3.51303 3.52264 3.65202 3.90985 4.05655 4.09241 4.26467 4.29623 4.32909 4.37160 4.42177 4.54561 4.58592 4.67214 4.68463 4.75142 4.86809 4.91946 4.94453 5.07956 5.09979 5.12021 5.15994 5.21931 5.25438 5.32202 5.37432 5.43516 5.59528 5.70152 5.94118 6.02136 6.11253 6.15579 6.57857 6.82131 6.96760 7.77734 8.76563 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015772 B = 0.002929 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.866060 B = 9558.795609 C =10693.001286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.124 3.876 3 H 0.096 0.904 4 C -0.121 4.121 5 C -0.121 4.121 6 C 0.121 3.879 7 H 0.065 0.935 8 C -0.161 4.161 9 N -0.580 5.580 10 C 0.529 3.471 11 O -0.531 6.531 12 C 0.492 3.508 13 O -0.505 6.505 14 N -0.629 5.629 15 C 0.180 3.820 16 C -0.203 4.203 17 C -0.045 4.045 18 C -0.250 4.250 19 C 0.131 3.869 20 O -0.232 6.232 21 C -0.412 4.412 22 H 0.106 0.894 23 C -0.025 4.025 24 N -0.922 5.922 25 Si 1.022 2.978 26 H -0.247 1.247 27 H -0.269 1.269 28 H -0.269 1.269 29 C -0.210 4.210 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.041 0.959 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.432 0.568 41 H 0.161 0.839 42 H 0.162 0.838 43 H 0.126 0.874 44 H 0.272 0.728 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.082 19.701 -9.039 21.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.024 3.976 3 H 0.114 0.886 4 C -0.159 4.159 5 C -0.159 4.159 6 C 0.018 3.982 7 H 0.083 0.917 8 C -0.219 4.219 9 N -0.314 5.314 10 C 0.311 3.689 11 O -0.410 6.410 12 C 0.274 3.726 13 O -0.379 6.379 14 N -0.277 5.277 15 C 0.086 3.914 16 C -0.223 4.223 17 C -0.063 4.063 18 C -0.270 4.270 19 C 0.080 3.920 20 O -0.139 6.139 21 C -0.488 4.488 22 H 0.124 0.876 23 C -0.222 4.222 24 N -0.560 5.560 25 Si 0.841 3.159 26 H -0.170 1.170 27 H -0.194 1.194 28 H -0.194 1.194 29 C -0.232 4.232 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.060 0.940 33 H 0.137 0.863 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.272 0.728 41 H 0.179 0.821 42 H 0.180 0.820 43 H 0.144 0.856 44 H 0.081 0.919 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.945 19.266 -9.451 21.661 hybrid contribution -0.028 -0.888 0.590 1.067 sum -2.973 18.378 -8.860 20.618 Atomic orbital electron populations 1.22083 0.93770 1.02001 1.03895 1.22320 0.95327 0.96461 0.83538 0.88583 1.22872 0.95453 1.00899 0.96638 1.22765 0.98261 1.03948 0.90901 1.21940 0.83778 0.95863 0.96600 0.91652 1.22250 0.97631 1.01431 1.00599 1.48630 1.27787 1.46666 1.08322 1.19309 0.83536 0.83073 0.82938 1.90704 1.28676 1.40914 1.80668 1.20622 0.82585 0.85175 0.84219 1.90831 1.29200 1.36809 1.81039 1.42978 1.46266 1.31001 1.07465 1.17291 0.98097 0.86761 0.89230 1.20876 1.09773 1.01704 0.89955 1.21035 0.94113 0.90730 1.00452 1.21375 1.11236 0.99356 0.95031 1.19583 0.93232 0.85311 0.93865 1.83967 1.77466 1.15910 1.36511 1.21924 1.46608 0.92336 0.87965 0.87640 1.26672 0.95805 0.99027 1.00734 1.70216 1.45169 1.20578 1.20038 0.84486 0.78347 0.76605 0.76476 1.17034 1.19436 1.19399 1.20027 1.11803 0.92678 0.98666 0.91976 0.88747 0.93972 0.86275 0.90684 0.88395 0.88693 0.93700 0.90492 0.91414 0.72779 0.82110 0.82023 0.85623 0.91867 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 8.59 71.98 0.62 -2.20 16 2 C 0.12 2.08 3.73 45.39 0.17 2.25 16 3 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 4 C -0.12 -1.40 6.50 31.91 0.21 -1.19 16 5 C -0.12 -1.65 6.48 31.78 0.21 -1.44 16 6 C 0.12 2.76 2.81 45.34 0.13 2.89 16 7 H 0.07 1.90 7.15 -2.39 -0.02 1.88 16 8 C -0.16 -3.82 8.76 71.98 0.63 -3.19 16 9 N -0.58 -13.87 2.98 -766.67 -2.29 -16.15 16 10 C 0.53 15.29 7.41 87.24 0.65 15.94 16 11 O -0.53 -15.82 14.45 -3.27 -0.05 -15.86 16 12 C 0.49 16.43 6.94 87.24 0.61 17.04 16 13 O -0.50 -19.97 9.63 -3.35 -0.03 -20.00 16 14 N -0.63 -19.50 5.32 -304.88 -1.62 -21.13 16 15 C 0.18 6.65 6.32 38.20 0.24 6.90 16 16 C -0.20 -6.21 9.96 22.44 0.22 -5.98 16 17 C -0.04 -1.47 10.03 22.23 0.22 -1.24 16 18 C -0.25 -10.86 9.12 22.42 0.20 -10.66 16 19 C 0.13 6.86 6.64 22.56 0.15 7.01 16 20 O -0.23 -14.57 9.76 -22.73 -0.22 -14.79 16 21 C -0.41 -24.44 9.43 67.92 0.64 -23.80 16 22 H 0.11 5.65 5.32 -2.91 -0.02 5.64 16 23 C -0.03 -1.45 5.49 84.83 0.47 -0.99 16 24 N -0.92 -58.01 13.67 21.61 0.30 -57.72 16 25 Si 1.02 43.30 29.55 68.60 2.03 45.33 16 26 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 27 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 28 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 29 C -0.21 -10.00 8.60 22.52 0.19 -9.80 16 30 H 0.06 1.37 6.25 -2.39 -0.01 1.35 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.97 8.05 -2.39 -0.02 0.95 16 35 H 0.10 1.00 7.85 -2.39 -0.02 0.98 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.04 1.38 5.12 -2.39 -0.01 1.36 16 38 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.43 10.55 8.32 -92.71 -0.77 9.78 16 41 H 0.16 3.46 8.06 -2.91 -0.02 3.43 16 42 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16 43 H 0.13 5.45 5.73 -2.91 -0.02 5.43 16 44 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 45 H 0.10 5.40 6.26 -2.91 -0.02 5.38 16 Total: -1.00 -79.19 364.97 3.93 -75.26 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: 0.26 Total: 33.54 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 5.55 Total: -8.47 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -3.61 Total: -95.00 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: -0.30 Total: -50.66 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -79.19 3.93 -75.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785232492.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.312 kcal (2) G-P(sol) polarization free energy of solvation -79.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds