Wall clock time and date at job start Tue Mar 31 2020 16:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47102 * 2 1 4 4 O 1.42901 * 109.46961 * 120.00238 * 2 1 3 5 5 C 1.42901 * 113.99848 * 149.99617 * 4 2 1 6 6 C 1.53001 * 109.46982 * 179.97438 * 5 4 2 7 7 H 1.09000 * 110.65323 * 183.54126 * 6 5 4 8 8 C 1.51577 * 110.59867 * 306.45572 * 6 5 4 9 9 O 1.21232 * 127.16125 * 298.48681 * 8 6 5 10 10 N 1.34774 * 105.68632 * 118.52825 * 8 6 5 11 11 C 1.39593 * 124.17738 * 179.97438 * 10 8 6 12 12 C 1.39409 * 119.82746 * 6.13894 * 11 10 8 13 13 C 1.36408 * 120.17438 * 179.74457 * 12 11 10 14 14 C 1.40849 * 119.82036 * 0.25569 * 13 12 11 15 15 C 1.41180 * 120.17022 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00048 * 204.45079 * 15 14 13 17 17 C 1.39916 * 120.00134 * 24.44860 * 15 14 13 18 18 N 1.30867 * 119.99665 * 15.18961 * 17 15 14 19 19 Si 1.86798 * 120.00125 * 195.19502 * 17 15 14 20 20 H 1.48494 * 109.47388 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.46975 * 119.99795 * 19 17 15 22 22 H 1.48498 * 109.47191 * 239.99673 * 19 17 15 23 23 C 1.40854 * 119.66319 * 0.02562 * 14 13 12 24 24 C 1.36405 * 119.81752 * 359.97438 * 23 14 13 25 25 C 1.33789 * 111.63974 * 0.22751 * 10 8 6 26 26 O 1.21532 * 123.76493 * 179.77287 * 25 10 8 27 27 N 1.34526 * 112.45957 * 359.59910 * 25 10 8 28 28 C 1.46502 * 126.68666 * 180.19815 * 27 25 10 29 29 H 1.09007 * 109.46807 * 299.99919 * 1 2 3 30 30 H 1.08997 * 109.47268 * 59.99483 * 1 2 3 31 31 H 1.08992 * 109.47555 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46364 * 240.00162 * 2 1 3 33 33 H 1.09001 * 109.46604 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46876 * 299.99992 * 3 2 1 35 35 H 1.08995 * 109.46930 * 60.00159 * 3 2 1 36 36 H 1.09002 * 109.46947 * 59.99945 * 5 4 2 37 37 H 1.09002 * 109.47057 * 299.99817 * 5 4 2 38 38 H 1.07998 * 119.91425 * 0.02562 * 12 11 10 39 39 H 1.08003 * 120.08673 * 180.23417 * 13 12 11 40 40 H 0.97000 * 119.99414 * 180.02562 * 18 17 15 41 41 H 1.07992 * 120.09150 * 180.02562 * 23 14 13 42 42 H 1.08000 * 119.91237 * 180.02562 * 24 23 14 43 43 H 1.09004 * 109.46835 * 270.21460 * 28 27 25 44 44 H 1.08992 * 109.47410 * 30.22054 * 28 27 25 45 45 H 1.09004 * 109.46940 * 150.22401 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.2660 -1.3246 0.9885 6 6 3.6760 -2.0083 2.2945 7 1 4.6640 -2.4586 2.1989 8 6 3.6486 -1.0213 3.4445 9 8 4.3121 -0.0132 3.5604 10 7 2.7339 -1.4979 4.3121 11 6 2.4005 -0.8797 5.5184 12 6 2.9341 0.3706 5.8275 13 6 2.6090 0.9835 7.0020 14 6 1.7360 0.3472 7.9059 15 6 1.3950 0.9745 9.1238 16 1 1.0759 0.3796 9.9669 17 6 1.4704 2.3669 9.2387 18 7 1.5630 3.1080 8.1641 19 14 1.4392 3.1679 10.9259 20 1 1.3297 2.1181 11.9704 21 1 2.6905 3.9411 11.1300 22 1 0.2721 4.0814 11.0187 23 6 1.2058 -0.9187 7.5889 24 6 1.5405 -1.5185 6.4105 25 6 2.1889 -2.6395 3.8767 26 8 1.3422 -3.2603 4.4888 27 7 2.6801 -3.0214 2.6840 28 6 2.3016 -4.2147 1.9230 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 4.0200 -0.5875 0.7124 37 1 3.1808 -2.0708 0.1985 38 1 3.6030 0.8574 5.1332 39 1 3.0201 1.9538 7.2383 40 1 1.6156 4.0733 8.2438 41 1 0.5355 -1.4126 8.2767 42 1 1.1345 -2.4889 6.1657 43 1 2.9417 -5.0483 2.2122 44 1 1.2618 -4.4650 2.1332 45 1 2.4199 -4.0186 0.8572 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804200334.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:13 Heat of formation + Delta-G solvation = -50.702813 kcal Electronic energy + Delta-G solvation = -29357.062218 eV Core-core repulsion = 25341.147235 eV Total energy + Delta-G solvation = -4015.914984 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.25612 -38.66912 -38.26234 -37.49671 -35.94034 -34.94046 -33.29332 -32.89056 -30.33577 -29.45738 -29.23805 -27.39921 -27.14936 -25.05114 -24.18637 -22.16881 -21.63859 -21.44341 -20.05004 -19.82598 -17.65990 -17.28687 -16.97988 -16.72581 -16.13576 -15.92543 -15.31035 -15.20391 -14.87309 -14.72431 -14.24361 -14.05447 -13.94151 -13.59462 -13.12225 -13.01292 -12.90285 -12.72076 -12.57480 -12.36589 -12.29045 -12.08951 -11.89941 -11.82520 -11.59579 -11.56503 -11.21106 -11.08411 -10.86024 -10.74072 -10.36245 -10.06745 -9.82290 -9.78581 -9.41367 -9.10250 -8.93424 -8.84638 -7.51043 -7.06394 -6.74225 -4.31664 1.93963 2.41271 2.61770 3.07123 3.08640 3.14199 3.15615 3.20600 3.40248 3.71106 3.93367 4.12451 4.49229 4.66151 4.77811 4.80618 4.86499 4.92293 5.00325 5.08356 5.14863 5.34270 5.46751 5.53765 5.58407 5.69375 5.70513 5.73643 5.84752 6.07419 6.12847 6.21203 6.35023 6.46861 6.72283 6.93025 7.03007 7.03953 7.13416 7.28001 7.62825 7.66235 7.71006 7.97308 8.06632 8.15443 8.30305 8.56756 8.64272 8.88846 8.98543 10.17427 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014747 B = 0.003478 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.290880 B = 8049.544474 C = 8956.453947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.085 3.915 3 C -0.177 4.177 4 O -0.372 6.372 5 C 0.066 3.934 6 C 0.094 3.906 7 H 0.135 0.865 8 C 0.524 3.476 9 O -0.466 6.466 10 N -0.481 5.481 11 C -0.025 4.025 12 C -0.104 4.104 13 C -0.156 4.156 14 C 0.107 3.893 15 C -0.452 4.452 16 H 0.080 0.920 17 C 0.073 3.927 18 N -0.789 5.789 19 Si 0.911 3.089 20 H -0.260 1.260 21 H -0.271 1.271 22 H -0.274 1.274 23 C -0.216 4.216 24 C -0.094 4.094 25 C 0.703 3.297 26 O -0.536 6.536 27 N -0.626 5.626 28 C 0.126 3.874 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.120 0.880 39 H 0.127 0.873 40 H 0.281 0.719 41 H 0.098 0.902 42 H 0.130 0.870 43 H 0.058 0.942 44 H 0.080 0.920 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.451 -7.432 -18.032 19.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.028 3.972 3 C -0.234 4.234 4 O -0.291 6.291 5 C -0.012 4.012 6 C -0.014 4.014 7 H 0.152 0.848 8 C 0.311 3.689 9 O -0.338 6.338 10 N -0.215 5.215 11 C -0.114 4.114 12 C -0.124 4.124 13 C -0.176 4.176 14 C 0.105 3.895 15 C -0.481 4.481 16 H 0.098 0.902 17 C -0.145 4.145 18 N -0.414 5.414 19 Si 0.735 3.265 20 H -0.183 1.183 21 H -0.197 1.197 22 H -0.200 1.200 23 C -0.237 4.237 24 C -0.113 4.113 25 C 0.406 3.594 26 O -0.410 6.410 27 N -0.367 5.367 28 C -0.015 4.015 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.138 0.862 39 H 0.145 0.855 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.148 0.852 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.181 -7.066 -17.552 19.186 hybrid contribution 0.111 0.514 0.325 0.618 sum 3.291 -6.552 -17.227 18.722 Atomic orbital electron populations 1.21856 0.93448 1.02691 1.02732 1.22081 0.95185 0.92523 0.87450 1.22309 1.01600 0.96673 1.02855 1.88076 1.35412 1.69807 1.35834 1.22593 0.87777 0.96175 0.94687 1.22216 0.95158 0.89034 0.95012 0.84809 1.20330 0.79302 0.85765 0.83489 1.90685 1.43302 1.23527 1.76255 1.43155 1.36113 1.22135 1.20118 1.17266 1.11371 0.96633 0.86152 1.20757 1.00459 0.92644 0.98531 1.21027 1.00690 1.01338 0.94579 1.17785 0.88384 0.90812 0.92561 1.19659 1.38748 0.91510 0.98186 0.90195 1.25976 0.92342 0.97801 0.98429 1.69847 1.34794 1.06890 1.29867 0.86215 0.78588 0.79440 0.82226 1.18343 1.19662 1.19951 1.20651 1.06197 0.99049 0.97762 1.20836 0.96913 0.99959 0.93585 1.15798 0.81370 0.80816 0.81416 1.90812 1.33029 1.57779 1.59390 1.47419 1.42883 1.25580 1.20782 1.21379 1.01757 0.83753 0.94590 0.91453 0.91296 0.92090 0.92368 0.92392 0.91734 0.91320 0.90876 0.91591 0.86239 0.85508 0.90807 0.88352 0.85236 0.92365 0.90080 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.56 37.16 0.36 -1.17 16 2 C 0.09 0.89 3.34 -26.73 -0.09 0.80 16 3 C -0.18 -1.85 9.53 37.16 0.35 -1.49 16 4 O -0.37 -5.05 9.39 -35.23 -0.33 -5.38 16 5 C 0.07 0.68 5.51 37.16 0.20 0.88 16 6 C 0.09 1.16 3.86 -68.21 -0.26 0.90 16 7 H 0.13 1.17 8.14 -51.93 -0.42 0.74 16 8 C 0.52 9.57 7.04 -10.55 -0.07 9.50 16 9 O -0.47 -9.50 15.02 5.60 0.08 -9.42 16 10 N -0.48 -10.13 2.81 -64.20 -0.18 -10.31 16 11 C -0.02 -0.62 6.57 -83.45 -0.55 -1.17 16 12 C -0.10 -2.69 9.24 -39.81 -0.37 -3.06 16 13 C -0.16 -4.28 8.64 -39.25 -0.34 -4.62 16 14 C 0.11 2.97 5.59 -106.80 -0.60 2.38 16 15 C -0.45 -12.19 9.05 -37.84 -0.34 -12.54 16 16 H 0.08 2.06 7.89 -52.48 -0.41 1.65 16 17 C 0.07 1.84 5.20 -17.33 -0.09 1.75 16 18 N -0.79 -20.71 10.79 55.55 0.60 -20.11 16 19 Si 0.91 18.83 29.59 -169.99 -5.03 13.80 16 20 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 C -0.22 -5.66 9.74 -39.25 -0.38 -6.05 16 24 C -0.09 -2.37 9.18 -39.81 -0.37 -2.74 16 25 C 0.70 13.50 8.22 -88.02 -0.72 12.77 16 26 O -0.54 -11.68 14.29 5.34 0.08 -11.61 16 27 N -0.63 -8.56 3.05 -180.28 -0.55 -9.11 16 28 C 0.13 1.15 11.04 59.85 0.66 1.81 16 29 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.47 7.79 -51.93 -0.40 0.06 16 33 H 0.06 0.59 7.87 -51.93 -0.41 0.18 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.68 7.87 -51.93 -0.41 0.27 16 37 H 0.07 0.47 7.35 -51.93 -0.38 0.08 16 38 H 0.12 3.02 5.32 -52.49 -0.28 2.74 16 39 H 0.13 3.54 6.04 -52.48 -0.32 3.22 16 40 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 41 H 0.10 2.40 8.06 -52.49 -0.42 1.98 16 42 H 0.13 3.21 5.14 -52.49 -0.27 2.94 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.82 8.03 -51.93 -0.42 0.40 16 45 H 0.07 0.44 7.34 -51.93 -0.38 0.06 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -33.27 371.56 -8.54 -41.81 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.20 Total: 6.77 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -2.61 Total: -2.04 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: -0.13 Total: -39.53 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.17 Total: -26.41 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.27 -8.54 -41.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804200334.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.895 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds