Wall clock time and date at job start Tue Mar 31 2020 16:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47102 * 2 1 4 4 O 1.42901 * 109.46961 * 120.00238 * 2 1 3 5 5 C 1.42901 * 113.99848 * 149.99617 * 4 2 1 6 6 C 1.53001 * 109.46982 * 179.97438 * 5 4 2 7 7 H 1.09000 * 110.65323 * 183.54126 * 6 5 4 8 8 C 1.51577 * 110.59867 * 306.45572 * 6 5 4 9 9 O 1.21232 * 127.16125 * 298.48681 * 8 6 5 10 10 N 1.34774 * 105.68632 * 118.52825 * 8 6 5 11 11 C 1.39593 * 124.17738 * 179.97438 * 10 8 6 12 12 C 1.39409 * 119.82746 * 6.13894 * 11 10 8 13 13 C 1.36408 * 120.17438 * 179.74457 * 12 11 10 14 14 C 1.40849 * 119.82036 * 0.25569 * 13 12 11 15 15 C 1.41180 * 120.17022 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00048 * 204.45079 * 15 14 13 17 17 C 1.39916 * 120.00134 * 24.44860 * 15 14 13 18 18 N 1.30867 * 119.99665 * 15.18961 * 17 15 14 19 19 Si 1.86798 * 120.00125 * 195.19502 * 17 15 14 20 20 H 1.48494 * 109.47388 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.46975 * 119.99795 * 19 17 15 22 22 H 1.48498 * 109.47191 * 239.99673 * 19 17 15 23 23 C 1.40854 * 119.66319 * 0.02562 * 14 13 12 24 24 C 1.36405 * 119.81752 * 359.97438 * 23 14 13 25 25 C 1.33789 * 111.63974 * 0.22751 * 10 8 6 26 26 O 1.21532 * 123.76493 * 179.77287 * 25 10 8 27 27 N 1.34526 * 112.45957 * 359.59910 * 25 10 8 28 28 C 1.46502 * 126.68666 * 180.19815 * 27 25 10 29 29 H 1.09007 * 109.46807 * 299.99919 * 1 2 3 30 30 H 1.08997 * 109.47268 * 59.99483 * 1 2 3 31 31 H 1.08992 * 109.47555 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46364 * 240.00162 * 2 1 3 33 33 H 1.09001 * 109.46604 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46876 * 299.99992 * 3 2 1 35 35 H 1.08995 * 109.46930 * 60.00159 * 3 2 1 36 36 H 1.09002 * 109.46947 * 59.99945 * 5 4 2 37 37 H 1.09002 * 109.47057 * 299.99817 * 5 4 2 38 38 H 1.07998 * 119.91425 * 0.02562 * 12 11 10 39 39 H 1.08003 * 120.08673 * 180.23417 * 13 12 11 40 40 H 0.97000 * 119.99414 * 180.02562 * 18 17 15 41 41 H 1.07992 * 120.09150 * 180.02562 * 23 14 13 42 42 H 1.08000 * 119.91237 * 180.02562 * 24 23 14 43 43 H 1.09004 * 109.46835 * 270.21460 * 28 27 25 44 44 H 1.08992 * 109.47410 * 30.22054 * 28 27 25 45 45 H 1.09004 * 109.46940 * 150.22401 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.2660 -1.3246 0.9885 6 6 3.6760 -2.0083 2.2945 7 1 4.6640 -2.4586 2.1989 8 6 3.6486 -1.0213 3.4445 9 8 4.3121 -0.0132 3.5604 10 7 2.7339 -1.4979 4.3121 11 6 2.4005 -0.8797 5.5184 12 6 2.9341 0.3706 5.8275 13 6 2.6090 0.9835 7.0020 14 6 1.7360 0.3472 7.9059 15 6 1.3950 0.9745 9.1238 16 1 1.0759 0.3796 9.9669 17 6 1.4704 2.3669 9.2387 18 7 1.5630 3.1080 8.1641 19 14 1.4392 3.1679 10.9259 20 1 1.3297 2.1181 11.9704 21 1 2.6905 3.9411 11.1300 22 1 0.2721 4.0814 11.0187 23 6 1.2058 -0.9187 7.5889 24 6 1.5405 -1.5185 6.4105 25 6 2.1889 -2.6395 3.8767 26 8 1.3422 -3.2603 4.4888 27 7 2.6801 -3.0214 2.6840 28 6 2.3016 -4.2147 1.9230 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 4.0200 -0.5875 0.7124 37 1 3.1808 -2.0708 0.1985 38 1 3.6030 0.8574 5.1332 39 1 3.0201 1.9538 7.2383 40 1 1.6156 4.0733 8.2438 41 1 0.5355 -1.4126 8.2767 42 1 1.1345 -2.4889 6.1657 43 1 2.9417 -5.0483 2.2122 44 1 1.2618 -4.4650 2.1332 45 1 2.4199 -4.0186 0.8572 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804200334.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:12 Heat of formation + Delta-G solvation = -71.359699 kcal Electronic energy + Delta-G solvation = -29357.957968 eV Core-core repulsion = 25341.147235 eV Total energy + Delta-G solvation = -4016.810733 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.66690 -39.83588 -39.76625 -39.11321 -37.33075 -36.56704 -35.10318 -33.75182 -31.86490 -31.31524 -30.74300 -28.52762 -28.12101 -26.68637 -25.50179 -23.76083 -23.25585 -22.30956 -21.71657 -21.38275 -19.38616 -18.92726 -18.30608 -17.90525 -17.49576 -17.14237 -17.03740 -16.44587 -16.03804 -15.90812 -15.71879 -15.40243 -15.21625 -15.06442 -14.67522 -14.49970 -14.11096 -13.91662 -13.77646 -13.71505 -13.54703 -13.44323 -13.18190 -13.07143 -12.94475 -12.80559 -12.67708 -12.60808 -12.37435 -12.01090 -11.82813 -11.64897 -11.62792 -11.23001 -10.98245 -10.65540 -10.57144 -10.02057 -9.59465 -9.05148 -8.67685 -6.37212 0.49428 0.76479 1.05390 1.15218 1.37791 1.44446 1.54656 2.01123 2.11123 2.19575 2.56290 2.71842 2.91497 3.61461 3.65649 3.85276 3.99328 4.09044 4.13821 4.27875 4.33725 4.37770 4.43423 4.46840 4.51896 4.69181 4.70492 4.73609 4.81434 4.88129 4.91741 4.92701 4.99545 5.11401 5.21124 5.26415 5.29656 5.32421 5.42201 5.63887 5.74260 5.83257 6.00690 6.22631 6.26456 6.37742 6.44718 6.57403 6.84277 6.88819 7.11718 8.27361 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014747 B = 0.003478 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.290880 B = 8049.544474 C = 8956.453947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.082 3.918 3 C -0.176 4.176 4 O -0.414 6.414 5 C 0.062 3.938 6 C 0.108 3.892 7 H 0.186 0.814 8 C 0.511 3.489 9 O -0.497 6.497 10 N -0.502 5.502 11 C -0.019 4.019 12 C -0.112 4.112 13 C -0.174 4.174 14 C 0.080 3.920 15 C -0.485 4.485 16 H 0.083 0.917 17 C 0.031 3.969 18 N -0.822 5.822 19 Si 0.991 3.009 20 H -0.255 1.255 21 H -0.262 1.262 22 H -0.264 1.264 23 C -0.228 4.228 24 C -0.101 4.101 25 C 0.691 3.309 26 O -0.574 6.574 27 N -0.606 5.606 28 C 0.117 3.883 29 H 0.032 0.968 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.031 0.969 36 H 0.086 0.914 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.291 0.709 41 H 0.108 0.892 42 H 0.136 0.864 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.439 -8.603 -20.674 22.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.026 3.974 3 C -0.233 4.233 4 O -0.334 6.334 5 C -0.015 4.015 6 C 0.001 3.999 7 H 0.203 0.797 8 C 0.301 3.699 9 O -0.370 6.370 10 N -0.236 5.236 11 C -0.110 4.110 12 C -0.131 4.131 13 C -0.194 4.194 14 C 0.077 3.923 15 C -0.514 4.514 16 H 0.101 0.899 17 C -0.184 4.184 18 N -0.447 5.447 19 Si 0.811 3.189 20 H -0.179 1.179 21 H -0.187 1.187 22 H -0.189 1.189 23 C -0.248 4.248 24 C -0.120 4.120 25 C 0.394 3.606 26 O -0.452 6.452 27 N -0.345 5.345 28 C -0.022 4.022 29 H 0.051 0.949 30 H 0.112 0.888 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.050 0.950 36 H 0.104 0.896 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.102 0.898 41 H 0.126 0.874 42 H 0.153 0.847 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.193 -8.275 -20.283 22.304 hybrid contribution -0.174 0.826 0.965 1.282 sum 4.019 -7.449 -19.318 21.091 Atomic orbital electron populations 1.21883 0.93902 1.02630 1.02256 1.22255 0.94912 0.92326 0.87940 1.22315 1.01732 0.97115 1.02163 1.88050 1.36889 1.70556 1.37921 1.22895 0.87033 0.97550 0.94048 1.22559 0.97159 0.87178 0.92968 0.79749 1.21482 0.77732 0.86239 0.84405 1.90651 1.44091 1.25131 1.77081 1.43361 1.37522 1.23229 1.19533 1.17324 1.09888 0.96114 0.87691 1.20817 1.00772 0.93339 0.98220 1.20986 1.01587 1.01256 0.95608 1.18089 0.89133 0.91672 0.93402 1.19927 1.40401 0.92843 0.98182 0.89899 1.26924 0.91048 0.97678 1.02753 1.69901 1.34789 1.07723 1.32300 0.85023 0.79075 0.78308 0.76474 1.17868 1.18692 1.18860 1.20847 1.06530 0.98996 0.98459 1.20984 0.97189 1.00265 0.93563 1.16062 0.81346 0.80188 0.83007 1.90761 1.34805 1.58651 1.60938 1.47625 1.41841 1.26416 1.18620 1.21826 1.01476 0.82523 0.96364 0.94881 0.88821 0.91900 0.88504 0.92105 0.89417 0.95001 0.89568 0.86583 0.86063 0.86793 0.89839 0.87416 0.84680 0.90136 0.91468 0.86532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.56 71.98 0.69 -2.15 16 2 C 0.08 1.50 3.34 30.60 0.10 1.61 16 3 C -0.18 -3.44 9.53 71.98 0.69 -2.76 16 4 O -0.41 -10.29 9.39 -148.98 -1.40 -11.69 16 5 C 0.06 0.99 5.51 71.98 0.40 1.39 16 6 C 0.11 2.27 3.86 44.37 0.17 2.45 16 7 H 0.19 2.15 8.14 -2.39 -0.02 2.13 16 8 C 0.51 18.38 7.04 87.94 0.62 19.00 16 9 O -0.50 -20.43 15.02 -2.88 -0.04 -20.47 16 10 N -0.50 -21.41 2.81 -594.29 -1.67 -23.08 16 11 C -0.02 -1.00 6.57 38.47 0.25 -0.75 16 12 C -0.11 -6.09 9.24 22.12 0.20 -5.89 16 13 C -0.17 -10.12 8.64 22.48 0.19 -9.93 16 14 C 0.08 4.65 5.59 -21.28 -0.12 4.54 16 15 C -0.48 -27.22 9.05 23.40 0.21 -27.01 16 16 H 0.08 4.43 7.89 -2.91 -0.02 4.41 16 17 C 0.03 1.62 5.20 85.24 0.44 2.06 16 18 N -0.82 -44.61 10.79 21.82 0.24 -44.37 16 19 Si 0.99 39.00 29.59 68.60 2.03 41.03 16 20 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 21 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 22 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 23 C -0.23 -12.56 9.74 22.48 0.22 -12.34 16 24 C -0.10 -5.33 9.18 22.12 0.20 -5.13 16 25 C 0.69 26.28 8.22 179.44 1.48 27.75 16 26 O -0.57 -25.42 14.29 -3.82 -0.05 -25.48 16 27 N -0.61 -14.76 3.05 -842.71 -2.57 -17.32 16 28 C 0.12 1.63 11.04 127.77 1.41 3.04 16 29 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.10 1.04 7.79 -2.39 -0.02 1.02 16 33 H 0.06 1.13 7.87 -2.39 -0.02 1.11 16 34 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.09 1.21 7.87 -2.39 -0.02 1.19 16 37 H 0.12 0.77 7.35 -2.39 -0.02 0.76 16 38 H 0.12 6.47 5.32 -2.91 -0.02 6.45 16 39 H 0.11 6.78 6.04 -2.91 -0.02 6.77 16 40 H 0.29 14.13 8.30 -92.71 -0.77 13.36 16 41 H 0.11 5.53 8.06 -2.91 -0.02 5.50 16 42 H 0.14 6.99 5.14 -2.91 -0.01 6.98 16 43 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 44 H 0.07 1.18 8.03 -2.39 -0.02 1.16 16 45 H 0.12 0.64 7.34 -2.38 -0.02 0.62 16 Total: -1.00 -80.11 371.56 4.70 -75.41 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 1.01 Total: 30.09 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 7.16 Total: -4.11 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -4.00 Total: -84.78 kcal Atomic # 8 Polarization: -56.15 SS G_CDS: -1.50 Total: -57.64 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -80.11 4.70 -75.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804200334.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.052 kcal (2) G-P(sol) polarization free energy of solvation -80.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds