Wall clock time and date at job start Tue Mar 31 2020 16:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47001 * 2 1 4 4 O 1.42899 * 109.47078 * 119.99774 * 2 1 3 5 5 C 1.42901 * 113.99838 * 149.99851 * 4 2 1 6 6 C 1.52997 * 109.47332 * 179.97438 * 5 4 2 7 7 H 1.08999 * 110.65580 * 172.08517 * 6 5 4 8 8 C 1.51593 * 110.76345 * 49.27385 * 6 5 4 9 9 O 1.21233 * 127.15589 * 61.62849 * 8 6 5 10 10 N 1.34763 * 105.68009 * 241.71342 * 8 6 5 11 11 C 1.39609 * 124.17297 * 179.97438 * 10 8 6 12 12 C 1.39402 * 119.82606 * 6.11648 * 11 10 8 13 13 C 1.36409 * 120.17364 * 180.27662 * 12 11 10 14 14 C 1.40847 * 119.81864 * 359.46995 * 13 12 11 15 15 C 1.41178 * 120.16844 * 180.27943 * 14 13 12 16 16 H 1.07999 * 120.00506 * 24.44376 * 15 14 13 17 17 C 1.39915 * 120.00033 * 204.44654 * 15 14 13 18 18 N 1.30862 * 120.00120 * 15.17716 * 17 15 14 19 19 Si 1.86799 * 120.00416 * 195.17241 * 17 15 14 20 20 H 1.48506 * 109.46662 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47141 * 119.99726 * 19 17 15 22 22 H 1.48498 * 109.47462 * 240.00173 * 19 17 15 23 23 C 1.40851 * 119.66406 * 0.25426 * 14 13 12 24 24 C 1.36412 * 119.81795 * 0.02562 * 23 14 13 25 25 C 1.33790 * 111.64817 * 359.65936 * 10 8 6 26 26 O 1.21533 * 123.77214 * 180.23333 * 25 10 8 27 27 N 1.34521 * 112.45820 * 0.22630 * 25 10 8 28 28 C 1.46502 * 126.69319 * 179.97438 * 27 25 10 29 29 H 1.09007 * 109.47061 * 299.99990 * 1 2 3 30 30 H 1.09001 * 109.47289 * 59.99704 * 1 2 3 31 31 H 1.08997 * 109.47203 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46538 * 240.00083 * 2 1 3 33 33 H 1.08996 * 109.47109 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46810 * 299.99771 * 3 2 1 35 35 H 1.08998 * 109.47462 * 60.00065 * 3 2 1 36 36 H 1.09000 * 109.47045 * 59.99996 * 5 4 2 37 37 H 1.08997 * 109.47027 * 300.00372 * 5 4 2 38 38 H 1.07994 * 119.91273 * 0.02562 * 12 11 10 39 39 H 1.08001 * 120.08541 * 179.75357 * 13 12 11 40 40 H 0.96998 * 120.00329 * 180.02562 * 18 17 15 41 41 H 1.07992 * 120.09419 * 180.02562 * 23 14 13 42 42 H 1.07993 * 119.90985 * 179.97438 * 24 23 14 43 43 H 1.09003 * 109.46749 * 0.02853 * 28 27 25 44 44 H 1.09002 * 109.47070 * 120.02558 * 28 27 25 45 45 H 1.09002 * 109.47446 * 240.02899 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2660 -1.3245 0.9886 6 6 3.6762 -2.0080 2.2945 7 1 4.5618 -2.6253 2.1437 8 6 2.5368 -2.8428 2.8450 9 8 2.0038 -3.7942 2.3155 10 7 2.2385 -2.3059 4.0446 11 6 1.2346 -2.7830 4.8894 12 6 0.5558 -3.9567 4.5657 13 6 -0.4302 -4.4262 5.3832 14 6 -0.7538 -3.7277 6.5627 15 6 -1.7688 -4.2102 7.4171 16 1 -2.0242 -5.2595 7.4136 17 6 -2.4441 -3.3289 8.2686 18 7 -2.3585 -2.0375 8.0750 19 14 -3.4680 -3.9955 9.6816 20 1 -3.4017 -5.4790 9.6840 21 1 -2.9367 -3.4746 10.9667 22 1 -4.8791 -3.5629 9.5176 23 6 -0.0593 -2.5457 6.8857 24 6 0.9202 -2.0859 6.0550 25 6 3.0276 -1.2635 4.3288 26 8 2.9517 -0.6191 5.3564 27 7 3.9145 -1.0086 3.3501 28 6 4.9209 0.0560 3.3363 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8900 36 1 4.0200 -0.5874 0.7124 37 1 3.1809 -2.0706 0.1986 38 1 0.8082 -4.4935 3.6633 39 1 -0.9579 -5.3335 5.1290 40 1 -2.8263 -1.4264 8.6655 41 1 -0.3015 -2.0048 7.7885 42 1 1.4534 -1.1796 6.3010 43 1 4.8518 0.6332 4.2584 44 1 5.9148 -0.3846 3.2570 45 1 4.7449 0.7114 2.4833 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804200335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:19 Heat of formation + Delta-G solvation = -50.861323 kcal Electronic energy + Delta-G solvation = -29333.549753 eV Core-core repulsion = 25317.627896 eV Total energy + Delta-G solvation = -4015.921857 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.25766 -38.67167 -38.27174 -37.49639 -35.93198 -34.94105 -33.29217 -32.92518 -30.26198 -29.58147 -29.16248 -27.45839 -27.11205 -25.05104 -24.20496 -22.15189 -21.59599 -21.48400 -20.13314 -19.77703 -17.57601 -17.34399 -16.97863 -16.78349 -16.21072 -15.76137 -15.41433 -15.10600 -15.00399 -14.63752 -14.21504 -14.06096 -13.99186 -13.64819 -13.11301 -13.06041 -12.86121 -12.66692 -12.61245 -12.37744 -12.27604 -12.12223 -11.90545 -11.86406 -11.60119 -11.51787 -11.22690 -11.05306 -10.88465 -10.74772 -10.33762 -10.12036 -9.81599 -9.80206 -9.39914 -9.10609 -8.94261 -8.82930 -7.50236 -7.06995 -6.73387 -4.31485 1.93376 2.41268 2.62774 3.07142 3.08787 3.14504 3.15650 3.20020 3.40058 3.71539 3.93749 4.12804 4.49190 4.67190 4.77097 4.78995 4.85904 4.97137 4.99430 5.06246 5.14356 5.31734 5.41271 5.54796 5.56352 5.63724 5.72182 5.74111 5.84446 6.00573 6.13966 6.20436 6.33803 6.50282 6.66373 6.93049 7.02746 7.05288 7.17699 7.26542 7.59264 7.65763 7.75179 7.94359 8.07385 8.17251 8.29430 8.58014 8.65010 8.89023 8.98979 10.18072 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015887 B = 0.003283 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.992441 B = 8527.744086 C = 8873.460982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.084 3.916 3 C -0.173 4.173 4 O -0.372 6.372 5 C 0.067 3.933 6 C 0.094 3.906 7 H 0.134 0.866 8 C 0.525 3.475 9 O -0.469 6.469 10 N -0.481 5.481 11 C -0.024 4.024 12 C -0.095 4.095 13 C -0.216 4.216 14 C 0.108 3.892 15 C -0.452 4.452 16 H 0.080 0.920 17 C 0.073 3.927 18 N -0.788 5.788 19 Si 0.911 3.089 20 H -0.260 1.260 21 H -0.271 1.271 22 H -0.274 1.274 23 C -0.157 4.157 24 C -0.104 4.104 25 C 0.702 3.298 26 O -0.533 6.533 27 N -0.627 5.627 28 C 0.123 3.877 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.120 0.880 39 H 0.099 0.901 40 H 0.281 0.719 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.220 5.930 -14.688 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.027 3.973 3 C -0.231 4.231 4 O -0.291 6.291 5 C -0.012 4.012 6 C -0.014 4.014 7 H 0.151 0.849 8 C 0.313 3.687 9 O -0.341 6.341 10 N -0.215 5.215 11 C -0.113 4.113 12 C -0.114 4.114 13 C -0.237 4.237 14 C 0.105 3.895 15 C -0.481 4.481 16 H 0.098 0.902 17 C -0.146 4.146 18 N -0.413 5.413 19 Si 0.735 3.265 20 H -0.184 1.184 21 H -0.197 1.197 22 H -0.200 1.200 23 C -0.176 4.176 24 C -0.123 4.123 25 C 0.406 3.594 26 O -0.407 6.407 27 N -0.368 5.368 28 C -0.018 4.018 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.138 0.862 39 H 0.117 0.883 40 H 0.092 0.908 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.108 0.892 44 H 0.082 0.918 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.738 6.087 -14.098 19.328 hybrid contribution -0.325 -0.090 0.266 0.430 sum 11.413 5.997 -13.832 18.909 Atomic orbital electron populations 1.21866 0.93293 1.03214 1.02536 1.22088 0.95415 0.92185 0.87653 1.22293 1.01124 0.96913 1.02746 1.88081 1.35362 1.69967 1.35737 1.22582 0.87348 0.96378 0.94846 1.22201 0.99088 0.90504 0.89598 0.84860 1.20314 0.83839 0.83753 0.80840 1.90667 1.54749 1.25678 1.62985 1.43153 1.31458 1.28294 1.18577 1.17267 0.97946 1.00263 0.95864 1.20563 0.96587 0.94267 1.00012 1.20599 1.02821 1.03366 0.96872 1.17782 0.90524 0.91226 0.89993 1.19651 1.15358 0.95927 1.17205 0.90216 1.25975 0.96319 0.94473 0.97789 1.69843 1.34512 1.03147 1.33805 0.86219 0.79211 0.80458 0.80591 1.18357 1.19660 1.19950 1.21075 0.96362 0.99522 1.00680 1.21017 0.98362 0.99710 0.93223 1.15809 0.79223 0.80735 0.83663 1.90829 1.71352 1.52698 1.25850 1.47433 1.37125 1.33716 1.18480 1.21411 0.88602 0.88086 1.03735 0.91547 0.91315 0.91668 0.92207 0.92732 0.91688 0.91598 0.91598 0.90895 0.86233 0.88325 0.90784 0.85551 0.85269 0.89176 0.91845 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.56 37.16 0.36 -1.33 16 2 C 0.08 0.88 3.34 -26.73 -0.09 0.79 16 3 C -0.17 -1.51 9.53 37.16 0.35 -1.15 16 4 O -0.37 -5.09 9.34 -35.23 -0.33 -5.41 16 5 C 0.07 0.68 5.59 37.16 0.21 0.89 16 6 C 0.09 1.16 3.86 -68.20 -0.26 0.90 16 7 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 8 C 0.53 9.49 6.94 -10.55 -0.07 9.42 16 9 O -0.47 -9.35 15.02 5.60 0.08 -9.26 16 10 N -0.48 -10.12 2.81 -64.20 -0.18 -10.30 16 11 C -0.02 -0.60 6.57 -83.45 -0.55 -1.15 16 12 C -0.09 -2.36 9.24 -39.81 -0.37 -2.72 16 13 C -0.22 -5.61 9.74 -39.25 -0.38 -5.99 16 14 C 0.11 2.97 5.59 -106.81 -0.60 2.38 16 15 C -0.45 -12.20 9.05 -37.84 -0.34 -12.54 16 16 H 0.08 2.05 7.89 -52.49 -0.41 1.64 16 17 C 0.07 1.85 5.20 -17.34 -0.09 1.76 16 18 N -0.79 -20.77 10.79 55.55 0.60 -20.17 16 19 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 16 20 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 C -0.16 -4.31 8.64 -39.25 -0.34 -4.65 16 24 C -0.10 -2.72 9.18 -39.81 -0.37 -3.09 16 25 C 0.70 13.62 8.22 -88.03 -0.72 12.90 16 26 O -0.53 -11.86 14.05 5.34 0.08 -11.78 16 27 N -0.63 -8.63 3.11 -180.27 -0.56 -9.19 16 28 C 0.12 1.14 11.06 59.85 0.66 1.80 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.51 7.79 -51.93 -0.40 0.11 16 33 H 0.05 0.41 7.87 -51.93 -0.41 0.00 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.49 7.44 -51.93 -0.39 0.10 16 37 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 38 H 0.12 2.85 5.32 -52.49 -0.28 2.57 16 39 H 0.10 2.38 8.06 -52.49 -0.42 1.96 16 40 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 41 H 0.13 3.57 6.04 -52.49 -0.32 3.25 16 42 H 0.13 3.38 5.14 -52.49 -0.27 3.11 16 43 H 0.09 0.94 7.67 -51.93 -0.40 0.54 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.45 7.83 -51.93 -0.41 0.04 16 LS Contribution 371.77 15.07 5.60 5.60 Total: -1.00 -33.26 371.77 -8.56 -41.82 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.22 Total: 6.66 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -2.60 Total: -1.79 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: -0.14 Total: -39.66 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.17 Total: -26.46 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.26 -8.56 -41.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804200335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.037 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds