Wall clock time and date at job start Tue Mar 31 2020 16:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47001 * 2 1 4 4 O 1.42899 * 109.47078 * 119.99774 * 2 1 3 5 5 C 1.42901 * 113.99838 * 149.99851 * 4 2 1 6 6 C 1.52997 * 109.47332 * 179.97438 * 5 4 2 7 7 H 1.08999 * 110.65580 * 172.08517 * 6 5 4 8 8 C 1.51593 * 110.76345 * 49.27385 * 6 5 4 9 9 O 1.21233 * 127.15589 * 61.62849 * 8 6 5 10 10 N 1.34763 * 105.68009 * 241.71342 * 8 6 5 11 11 C 1.39609 * 124.17297 * 179.97438 * 10 8 6 12 12 C 1.39402 * 119.82606 * 6.11648 * 11 10 8 13 13 C 1.36409 * 120.17364 * 180.27662 * 12 11 10 14 14 C 1.40847 * 119.81864 * 359.46995 * 13 12 11 15 15 C 1.41178 * 120.16844 * 180.27943 * 14 13 12 16 16 H 1.07999 * 120.00506 * 24.44376 * 15 14 13 17 17 C 1.39915 * 120.00033 * 204.44654 * 15 14 13 18 18 N 1.30862 * 120.00120 * 15.17716 * 17 15 14 19 19 Si 1.86799 * 120.00416 * 195.17241 * 17 15 14 20 20 H 1.48506 * 109.46662 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47141 * 119.99726 * 19 17 15 22 22 H 1.48498 * 109.47462 * 240.00173 * 19 17 15 23 23 C 1.40851 * 119.66406 * 0.25426 * 14 13 12 24 24 C 1.36412 * 119.81795 * 0.02562 * 23 14 13 25 25 C 1.33790 * 111.64817 * 359.65936 * 10 8 6 26 26 O 1.21533 * 123.77214 * 180.23333 * 25 10 8 27 27 N 1.34521 * 112.45820 * 0.22630 * 25 10 8 28 28 C 1.46502 * 126.69319 * 179.97438 * 27 25 10 29 29 H 1.09007 * 109.47061 * 299.99990 * 1 2 3 30 30 H 1.09001 * 109.47289 * 59.99704 * 1 2 3 31 31 H 1.08997 * 109.47203 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46538 * 240.00083 * 2 1 3 33 33 H 1.08996 * 109.47109 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46810 * 299.99771 * 3 2 1 35 35 H 1.08998 * 109.47462 * 60.00065 * 3 2 1 36 36 H 1.09000 * 109.47045 * 59.99996 * 5 4 2 37 37 H 1.08997 * 109.47027 * 300.00372 * 5 4 2 38 38 H 1.07994 * 119.91273 * 0.02562 * 12 11 10 39 39 H 1.08001 * 120.08541 * 179.75357 * 13 12 11 40 40 H 0.96998 * 120.00329 * 180.02562 * 18 17 15 41 41 H 1.07992 * 120.09419 * 180.02562 * 23 14 13 42 42 H 1.07993 * 119.90985 * 179.97438 * 24 23 14 43 43 H 1.09003 * 109.46749 * 0.02853 * 28 27 25 44 44 H 1.09002 * 109.47070 * 120.02558 * 28 27 25 45 45 H 1.09002 * 109.47446 * 240.02899 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2660 -1.3245 0.9886 6 6 3.6762 -2.0080 2.2945 7 1 4.5618 -2.6253 2.1437 8 6 2.5368 -2.8428 2.8450 9 8 2.0038 -3.7942 2.3155 10 7 2.2385 -2.3059 4.0446 11 6 1.2346 -2.7830 4.8894 12 6 0.5558 -3.9567 4.5657 13 6 -0.4302 -4.4262 5.3832 14 6 -0.7538 -3.7277 6.5627 15 6 -1.7688 -4.2102 7.4171 16 1 -2.0242 -5.2595 7.4136 17 6 -2.4441 -3.3289 8.2686 18 7 -2.3585 -2.0375 8.0750 19 14 -3.4680 -3.9955 9.6816 20 1 -3.4017 -5.4790 9.6840 21 1 -2.9367 -3.4746 10.9667 22 1 -4.8791 -3.5629 9.5176 23 6 -0.0593 -2.5457 6.8857 24 6 0.9202 -2.0859 6.0550 25 6 3.0276 -1.2635 4.3288 26 8 2.9517 -0.6191 5.3564 27 7 3.9145 -1.0086 3.3501 28 6 4.9209 0.0560 3.3363 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8900 36 1 4.0200 -0.5874 0.7124 37 1 3.1809 -2.0706 0.1986 38 1 0.8082 -4.4935 3.6633 39 1 -0.9579 -5.3335 5.1290 40 1 -2.8263 -1.4264 8.6655 41 1 -0.3015 -2.0048 7.7885 42 1 1.4534 -1.1796 6.3010 43 1 4.8518 0.6332 4.2584 44 1 5.9148 -0.3846 3.2570 45 1 4.7449 0.7114 2.4833 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804200335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:16 Heat of formation + Delta-G solvation = -71.522659 kcal Electronic energy + Delta-G solvation = -29334.445696 eV Core-core repulsion = 25317.627896 eV Total energy + Delta-G solvation = -4016.817800 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -43.66762 -39.83376 -39.76572 -39.11050 -37.33042 -36.56356 -35.10647 -33.76891 -31.72585 -31.48048 -30.68021 -28.54336 -28.09590 -26.68413 -25.52603 -23.68743 -23.28912 -22.31122 -21.77350 -21.35158 -19.37688 -18.90336 -18.30680 -17.93898 -17.51556 -17.19935 -16.86530 -16.52656 -16.03399 -15.96707 -15.69010 -15.37035 -15.17738 -15.03113 -14.68473 -14.58065 -14.13365 -13.84985 -13.80519 -13.68039 -13.51859 -13.43804 -13.16766 -13.09438 -12.93908 -12.80684 -12.65886 -12.59931 -12.36652 -11.96536 -11.93269 -11.65145 -11.62475 -11.20152 -10.98409 -10.65671 -10.56109 -10.02485 -9.58212 -9.05409 -8.66830 -6.36836 0.49920 0.77213 1.05022 1.14914 1.37759 1.44718 1.54783 2.01083 2.11458 2.19744 2.55835 2.72612 2.92474 3.61455 3.67084 3.83228 4.00142 4.10173 4.15597 4.27914 4.34355 4.38689 4.44142 4.45541 4.53289 4.70057 4.70755 4.71709 4.81229 4.89984 4.90718 4.92994 5.00126 5.09930 5.24407 5.24694 5.30317 5.32731 5.42353 5.64292 5.73752 5.83694 6.01318 6.23985 6.26037 6.36957 6.43641 6.59937 6.84847 6.88910 7.11846 8.27946 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015887 B = 0.003283 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.992441 B = 8527.744086 C = 8873.460982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.080 3.920 3 C -0.167 4.167 4 O -0.415 6.415 5 C 0.063 3.937 6 C 0.107 3.893 7 H 0.186 0.814 8 C 0.515 3.485 9 O -0.494 6.494 10 N -0.501 5.501 11 C -0.019 4.019 12 C -0.099 4.099 13 C -0.227 4.227 14 C 0.080 3.920 15 C -0.485 4.485 16 H 0.084 0.916 17 C 0.030 3.970 18 N -0.822 5.822 19 Si 0.992 3.008 20 H -0.254 1.254 21 H -0.264 1.264 22 H -0.264 1.264 23 C -0.175 4.175 24 C -0.115 4.115 25 C 0.689 3.311 26 O -0.576 6.576 27 N -0.608 5.608 28 C 0.114 3.886 29 H 0.038 0.962 30 H 0.095 0.905 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.132 0.868 39 H 0.111 0.889 40 H 0.290 0.710 41 H 0.111 0.889 42 H 0.126 0.874 43 H 0.072 0.928 44 H 0.103 0.897 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.266 6.175 -16.994 23.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.023 3.977 3 C -0.224 4.224 4 O -0.336 6.336 5 C -0.014 4.014 6 C 0.001 3.999 7 H 0.203 0.797 8 C 0.305 3.695 9 O -0.367 6.367 10 N -0.236 5.236 11 C -0.109 4.109 12 C -0.118 4.118 13 C -0.247 4.247 14 C 0.077 3.923 15 C -0.513 4.513 16 H 0.102 0.898 17 C -0.185 4.185 18 N -0.448 5.448 19 Si 0.811 3.189 20 H -0.178 1.178 21 H -0.188 1.188 22 H -0.188 1.188 23 C -0.195 4.195 24 C -0.134 4.134 25 C 0.393 3.607 26 O -0.454 6.454 27 N -0.347 5.347 28 C -0.025 4.025 29 H 0.057 0.943 30 H 0.114 0.886 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.127 0.873 37 H 0.111 0.889 38 H 0.149 0.851 39 H 0.129 0.871 40 H 0.101 0.899 41 H 0.129 0.871 42 H 0.143 0.857 43 H 0.090 0.910 44 H 0.122 0.878 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.849 6.352 -16.484 22.447 hybrid contribution -0.865 -0.107 0.823 1.199 sum 12.985 6.246 -15.660 21.280 Atomic orbital electron populations 1.21918 0.94817 1.01885 1.02525 1.22261 0.94394 0.93351 0.87707 1.22241 1.02232 0.95496 1.02457 1.88050 1.37164 1.70744 1.37641 1.22881 0.87288 0.97767 0.93480 1.22566 0.98181 0.89688 0.89459 0.79692 1.21404 0.84790 0.83612 0.79697 1.90633 1.56024 1.26895 1.63145 1.43350 1.31314 1.29524 1.19414 1.17330 0.98302 0.99599 0.95703 1.20724 0.96418 0.94482 1.00197 1.20818 1.03353 1.03836 0.96663 1.18086 0.91412 0.91717 0.91083 1.19928 1.16158 0.96530 1.18727 0.89780 1.26937 0.97184 0.94415 0.99964 1.69905 1.35333 1.04571 1.34954 0.85023 0.77469 0.79823 0.76555 1.17754 1.18848 1.18843 1.21017 0.97488 1.00214 1.00823 1.21069 0.98328 0.99921 0.94092 1.16102 0.79982 0.80216 0.84430 1.90782 1.72734 1.53916 1.27941 1.47646 1.35863 1.34259 1.16916 1.21846 0.89047 0.87488 1.04144 0.94287 0.88603 0.93610 0.89537 0.90839 0.89867 0.94004 0.87299 0.88853 0.85051 0.87095 0.89886 0.87076 0.85672 0.90958 0.87817 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 9.56 71.98 0.69 -2.67 16 2 C 0.08 1.47 3.34 30.60 0.10 1.57 16 3 C -0.17 -2.40 9.53 71.98 0.69 -1.71 16 4 O -0.42 -10.42 9.34 -148.98 -1.39 -11.81 16 5 C 0.06 1.00 5.59 71.98 0.40 1.40 16 6 C 0.11 2.24 3.86 44.37 0.17 2.41 16 7 H 0.19 2.07 8.14 -2.39 -0.02 2.05 16 8 C 0.51 18.02 6.94 87.94 0.61 18.64 16 9 O -0.49 -19.34 15.02 -2.88 -0.04 -19.39 16 10 N -0.50 -21.35 2.81 -594.28 -1.67 -23.03 16 11 C -0.02 -0.96 6.57 38.46 0.25 -0.71 16 12 C -0.10 -5.08 9.24 22.12 0.20 -4.88 16 13 C -0.23 -12.24 9.74 22.48 0.22 -12.03 16 14 C 0.08 4.64 5.59 -21.28 -0.12 4.52 16 15 C -0.48 -27.16 9.05 23.40 0.21 -26.95 16 16 H 0.08 4.47 7.89 -2.91 -0.02 4.44 16 17 C 0.03 1.58 5.20 85.24 0.44 2.02 16 18 N -0.82 -45.01 10.79 21.82 0.24 -44.77 16 19 Si 0.99 39.14 29.59 68.60 2.03 41.17 16 20 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 21 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 22 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 23 C -0.18 -10.30 8.64 22.48 0.19 -10.11 16 24 C -0.11 -6.38 9.18 22.12 0.20 -6.18 16 25 C 0.69 26.80 8.22 179.44 1.48 28.27 16 26 O -0.58 -26.58 14.05 -3.82 -0.05 -26.63 16 27 N -0.61 -15.07 3.11 -842.69 -2.62 -17.69 16 28 C 0.11 1.66 11.06 127.77 1.41 3.07 16 29 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.09 1.12 7.79 -2.39 -0.02 1.11 16 33 H 0.07 0.77 7.87 -2.39 -0.02 0.75 16 34 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.11 0.86 7.44 -2.39 -0.02 0.84 16 37 H 0.09 1.16 8.08 -2.39 -0.02 1.14 16 38 H 0.13 6.39 5.32 -2.91 -0.02 6.37 16 39 H 0.11 5.54 8.06 -2.91 -0.02 5.51 16 40 H 0.29 14.26 8.30 -92.71 -0.77 13.49 16 41 H 0.11 6.73 6.04 -2.91 -0.02 6.71 16 42 H 0.13 7.02 5.14 -2.91 -0.01 7.01 16 43 H 0.07 1.38 7.67 -2.39 -0.02 1.36 16 44 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.09 0.86 7.83 -2.39 -0.02 0.84 16 Total: -1.00 -80.02 371.77 4.65 -75.37 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: 1.01 Total: 30.10 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 7.16 Total: -3.32 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -4.06 Total: -85.49 kcal Atomic # 8 Polarization: -56.34 SS G_CDS: -1.49 Total: -57.83 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -80.02 4.65 -75.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804200335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.849 kcal (2) G-P(sol) polarization free energy of solvation -80.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds