Wall clock time and date at job start Tue Mar 31 2020 16:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53009 * 109.47091 * 2 1 4 4 O 1.42900 * 109.47663 * 119.99667 * 2 1 3 5 5 C 1.42905 * 113.99847 * 89.99497 * 4 2 1 6 6 C 1.52995 * 109.47230 * 180.02562 * 5 4 2 7 7 O 1.42898 * 109.46940 * 65.00211 * 6 5 4 8 8 N 1.41602 * 113.99969 * 184.88766 * 7 6 5 9 9 C 1.34782 * 119.99965 * 185.04000 * 8 7 6 10 10 O 1.21662 * 119.99826 * 4.84196 * 9 8 7 11 11 C 1.46887 * 119.99621 * 184.84983 * 9 8 7 12 12 C 1.36129 * 125.43402 * 173.37977 * 11 9 8 13 13 C 1.41702 * 107.74675 * 180.25657 * 12 11 9 14 14 C 1.40023 * 133.35029 * 179.76170 * 13 12 11 15 15 C 1.36575 * 119.83222 * 179.97438 * 14 13 12 16 16 C 1.38858 * 120.60082 * 359.97438 * 15 14 13 17 17 C 1.37850 * 120.62870 * 0.02562 * 16 15 14 18 18 C 1.39081 * 119.81806 * 359.97438 * 17 16 15 19 19 N 1.37832 * 133.16567 * 180.02562 * 18 17 16 20 20 C 1.36893 * 125.62133 * 359.97438 * 19 18 17 21 21 H 1.08005 * 120.00049 * 131.10090 * 20 19 18 22 22 C 1.39015 * 119.99780 * 311.10862 * 20 19 18 23 23 N 1.31347 * 119.99820 * 154.75335 * 22 20 19 24 24 Si 1.86798 * 119.99792 * 334.47777 * 22 20 19 25 25 H 1.48501 * 109.46682 * 184.27015 * 24 22 20 26 26 H 1.48499 * 109.47211 * 304.26722 * 24 22 20 27 27 H 1.48505 * 109.47087 * 64.27254 * 24 22 20 28 28 H 1.08997 * 109.47147 * 300.00177 * 1 2 3 29 29 H 1.08997 * 109.47417 * 60.00132 * 1 2 3 30 30 H 1.08995 * 109.47277 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47380 * 240.00056 * 2 1 3 32 32 H 1.08998 * 109.47144 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46967 * 299.99691 * 3 2 1 34 34 H 1.08997 * 109.47269 * 59.99898 * 3 2 1 35 35 H 1.09005 * 109.46266 * 60.00630 * 5 4 2 36 36 H 1.08998 * 109.47015 * 300.00777 * 5 4 2 37 37 H 1.09007 * 109.47386 * 305.00649 * 6 5 4 38 38 H 1.09001 * 109.47502 * 185.00643 * 6 5 4 39 39 H 0.97002 * 120.00465 * 5.04039 * 8 7 6 40 40 H 1.07998 * 126.12835 * 359.97438 * 12 11 9 41 41 H 1.08007 * 120.08158 * 359.96307 * 14 13 12 42 42 H 1.07995 * 119.70003 * 180.02562 * 15 14 13 43 43 H 1.07992 * 119.68643 * 180.02562 * 16 15 14 44 44 H 1.08002 * 120.08579 * 179.97438 * 17 16 15 45 45 H 0.96995 * 120.00113 * 359.72416 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.2001 -2.0782 0.9887 6 6 2.7080 -2.6926 2.2945 7 8 1.6998 -2.5746 3.3002 8 7 2.1100 -3.0159 4.5817 9 6 1.2242 -3.0540 5.5968 10 8 0.0534 -2.7940 5.3926 11 6 1.6726 -3.4094 6.9497 12 6 0.9064 -3.3591 8.0737 13 6 1.7111 -3.7736 9.1639 14 6 1.4714 -3.9159 10.5361 15 6 2.4717 -4.3483 11.3593 16 6 3.7272 -4.6496 10.8482 17 6 3.9872 -4.5173 9.5009 18 6 2.9844 -4.0787 8.6428 19 7 2.9384 -3.8523 7.2840 20 6 3.9772 -4.0305 6.4104 21 1 3.8252 -4.5863 5.4969 22 6 5.2277 -3.4963 6.6992 23 7 6.3078 -4.0368 6.1831 24 14 5.3712 -2.0051 7.8151 25 1 6.7899 -1.5712 7.8812 26 1 4.5403 -0.8999 7.2736 27 1 4.8977 -2.3589 9.1774 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 2.9320 -2.2466 0.1986 36 1 1.2538 -2.5433 0.7125 37 1 3.6068 -2.1674 2.6178 38 1 2.9402 -3.7455 2.1346 39 1 3.0285 -3.2908 4.7289 40 1 -0.1281 -3.0533 8.1260 41 1 0.4979 -3.6841 10.9425 42 1 2.2844 -4.4578 12.4172 43 1 4.5073 -4.9908 11.5125 44 1 4.9670 -4.7537 9.1129 45 1 6.2333 -4.8111 5.6037 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812806481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:32 Heat of formation + Delta-G solvation = -22.228294 kcal Electronic energy + Delta-G solvation = -28447.486749 eV Core-core repulsion = 24432.806513 eV Total energy + Delta-G solvation = -4014.680236 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.82129 -38.79662 -38.34326 -36.66808 -36.18726 -33.87455 -33.18771 -31.77234 -31.31326 -29.40933 -28.89695 -27.95499 -27.35550 -24.67839 -23.29881 -22.69524 -21.46681 -21.13088 -20.44635 -19.31575 -18.97805 -17.60609 -17.17413 -16.72911 -16.01079 -15.44151 -15.34653 -15.10702 -14.99467 -14.78296 -14.34188 -13.92659 -13.72267 -13.42937 -13.36906 -13.18445 -13.09388 -12.81622 -12.65908 -12.54424 -12.37044 -12.15864 -12.10324 -11.60033 -11.46062 -11.18545 -11.05016 -10.94874 -10.69465 -10.58878 -10.47428 -10.31393 -9.97207 -9.69251 -9.55327 -9.41348 -8.73514 -8.35404 -7.69620 -7.33569 -6.96069 -4.94259 1.55274 2.39176 2.43828 2.86098 3.10922 3.15979 3.34101 3.50227 3.86520 4.00900 4.08962 4.46484 4.66599 4.69620 4.76877 4.90325 4.96017 5.02704 5.09382 5.28747 5.36018 5.40921 5.43145 5.58064 5.62910 5.67418 5.67599 5.70080 5.72646 5.87241 6.02396 6.10029 6.14167 6.20752 6.36365 6.55888 6.72407 6.79009 7.11184 7.12971 7.19187 7.27060 7.30487 7.38885 7.56607 7.69290 7.95621 8.01324 8.37081 8.90423 8.95657 9.84202 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015792 B = 0.003279 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.579908 B = 8537.362664 C = 9496.053866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.080 3.920 3 C -0.150 4.150 4 O -0.373 6.373 5 C 0.073 3.927 6 C 0.035 3.965 7 O -0.148 6.148 8 N -0.590 5.590 9 C 0.606 3.394 10 O -0.538 6.538 11 C -0.006 4.006 12 C -0.151 4.151 13 C -0.128 4.128 14 C -0.076 4.076 15 C -0.159 4.159 16 C -0.128 4.128 17 C -0.092 4.092 18 C 0.076 3.924 19 N -0.279 5.279 20 C -0.462 4.462 21 H 0.102 0.898 22 C 0.059 3.941 23 N -0.816 5.816 24 Si 1.015 2.985 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.244 1.244 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.423 0.577 40 H 0.140 0.860 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.117 0.883 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.677 3.469 -6.638 7.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.022 3.978 3 C -0.207 4.207 4 O -0.292 6.292 5 C -0.005 4.005 6 C -0.043 4.043 7 O -0.151 6.151 8 N -0.301 5.301 9 C 0.395 3.605 10 O -0.415 6.415 11 C -0.120 4.120 12 C -0.179 4.179 13 C -0.133 4.133 14 C -0.094 4.094 15 C -0.178 4.178 16 C -0.149 4.149 17 C -0.112 4.112 18 C -0.037 4.037 19 N 0.055 4.945 20 C -0.588 4.588 21 H 0.120 0.880 22 C -0.160 4.160 23 N -0.441 5.441 24 Si 0.837 3.163 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.168 1.168 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.275 0.725 40 H 0.158 0.842 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.135 0.865 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.216 4.797 -6.376 8.281 hybrid contribution -0.320 -1.526 -1.371 2.076 sum -2.536 3.271 -7.746 8.783 Atomic orbital electron populations 1.22296 0.95919 1.02536 1.02561 1.22083 0.93852 0.93855 0.87962 1.21862 1.01746 0.94563 1.02541 1.88066 1.86496 1.19267 1.35398 1.22459 1.00547 0.82487 0.95023 1.22940 0.93253 1.00167 0.87926 1.90504 1.32161 1.84694 1.07743 1.48575 1.14824 1.68018 0.98723 1.17145 0.84730 0.77060 0.81571 1.90750 1.16835 1.50798 1.83116 1.20126 0.88946 1.10508 0.92459 1.20477 0.99261 1.08718 0.89426 1.18019 0.93599 1.08031 0.93612 1.20173 0.98411 0.99517 0.91345 1.20370 0.93820 1.04905 0.98696 1.20628 0.96985 1.03230 0.94008 1.20110 0.97697 1.00996 0.92368 1.18503 0.95718 1.04743 0.84777 1.40265 1.07663 1.42099 1.04498 1.20524 0.89887 1.42052 1.06292 0.88040 1.26709 0.90033 1.00441 0.98793 1.70864 1.29121 1.19710 1.24375 0.84355 0.77773 0.75564 0.78579 1.19628 1.19587 1.16830 0.91468 0.91877 0.92420 0.92444 0.92021 0.91384 0.91579 0.91173 0.92172 0.91033 0.90952 0.72461 0.84176 0.87038 0.87217 0.86863 0.86537 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 9.53 37.15 0.35 -1.46 16 2 C 0.08 0.87 3.34 -26.73 -0.09 0.78 16 3 C -0.15 -1.43 9.56 37.16 0.36 -1.07 16 4 O -0.37 -5.39 9.95 -40.08 -0.40 -5.79 16 5 C 0.07 0.91 6.13 37.16 0.23 1.14 16 6 C 0.03 0.53 6.61 37.16 0.25 0.77 16 7 O -0.15 -2.99 11.08 -34.76 -0.39 -3.37 16 8 N -0.59 -12.87 6.33 30.31 0.19 -12.68 16 9 C 0.61 14.43 7.91 -12.76 -0.10 14.33 16 10 O -0.54 -13.82 17.26 -12.86 -0.22 -14.04 16 11 C -0.01 -0.15 6.77 -82.25 -0.56 -0.70 16 12 C -0.15 -3.31 10.55 -39.02 -0.41 -3.72 16 13 C -0.13 -2.73 6.16 -106.89 -0.66 -3.39 16 14 C -0.08 -1.37 10.06 -39.51 -0.40 -1.77 16 15 C -0.16 -2.68 9.97 -39.95 -0.40 -3.07 16 16 C -0.13 -2.30 10.02 -39.49 -0.40 -2.69 16 17 C -0.09 -1.93 7.25 -39.41 -0.29 -2.21 16 18 C 0.08 1.74 5.20 -83.84 -0.44 1.30 16 19 N -0.28 -6.61 2.24 -56.08 -0.13 -6.73 16 20 C -0.46 -10.95 7.67 -15.00 -0.12 -11.07 16 21 H 0.10 2.42 6.88 -52.48 -0.36 2.06 16 22 C 0.06 1.39 4.73 -17.47 -0.08 1.31 16 23 N -0.82 -19.74 13.69 55.50 0.76 -18.98 16 24 Si 1.02 22.34 26.71 -169.99 -4.54 17.80 16 25 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.24 -5.25 5.31 56.52 0.30 -4.95 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.61 7.87 -51.93 -0.41 0.20 16 31 H 0.06 0.51 7.79 -51.93 -0.40 0.11 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 36 H 0.06 0.72 7.87 -51.93 -0.41 0.31 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.42 9.00 4.51 -40.82 -0.18 8.81 16 40 H 0.14 2.79 8.06 -52.49 -0.42 2.37 16 41 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 42 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 43 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 44 H 0.12 2.47 7.09 -52.49 -0.37 2.10 16 45 H 0.29 6.69 8.73 -40.82 -0.36 6.33 16 LS Contribution 376.29 15.07 5.67 5.67 Total: -1.00 -29.21 376.29 -8.26 -37.47 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -6.46 Total: 12.20 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -2.75 Total: -11.54 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.83 Total: -38.40 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -1.01 Total: -23.20 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.54 Total: 17.80 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.21 -8.26 -37.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812806481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.241 kcal (2) G-P(sol) polarization free energy of solvation -29.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds