Wall clock time and date at job start Tue Mar 31 2020 16:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53009 * 109.47091 * 2 1 4 4 O 1.42900 * 109.47663 * 119.99667 * 2 1 3 5 5 C 1.42905 * 113.99847 * 89.99497 * 4 2 1 6 6 C 1.52995 * 109.47230 * 180.02562 * 5 4 2 7 7 O 1.42898 * 109.46940 * 65.00211 * 6 5 4 8 8 N 1.41602 * 113.99969 * 184.88766 * 7 6 5 9 9 C 1.34782 * 119.99965 * 185.04000 * 8 7 6 10 10 O 1.21662 * 119.99826 * 4.84196 * 9 8 7 11 11 C 1.46887 * 119.99621 * 184.84983 * 9 8 7 12 12 C 1.36129 * 125.43402 * 173.37977 * 11 9 8 13 13 C 1.41702 * 107.74675 * 180.25657 * 12 11 9 14 14 C 1.40023 * 133.35029 * 179.76170 * 13 12 11 15 15 C 1.36575 * 119.83222 * 179.97438 * 14 13 12 16 16 C 1.38858 * 120.60082 * 359.97438 * 15 14 13 17 17 C 1.37850 * 120.62870 * 0.02562 * 16 15 14 18 18 C 1.39081 * 119.81806 * 359.97438 * 17 16 15 19 19 N 1.37832 * 133.16567 * 180.02562 * 18 17 16 20 20 C 1.36893 * 125.62133 * 359.97438 * 19 18 17 21 21 H 1.08005 * 120.00049 * 131.10090 * 20 19 18 22 22 C 1.39015 * 119.99780 * 311.10862 * 20 19 18 23 23 N 1.31347 * 119.99820 * 154.75335 * 22 20 19 24 24 Si 1.86798 * 119.99792 * 334.47777 * 22 20 19 25 25 H 1.48501 * 109.46682 * 184.27015 * 24 22 20 26 26 H 1.48499 * 109.47211 * 304.26722 * 24 22 20 27 27 H 1.48505 * 109.47087 * 64.27254 * 24 22 20 28 28 H 1.08997 * 109.47147 * 300.00177 * 1 2 3 29 29 H 1.08997 * 109.47417 * 60.00132 * 1 2 3 30 30 H 1.08995 * 109.47277 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47380 * 240.00056 * 2 1 3 32 32 H 1.08998 * 109.47144 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46967 * 299.99691 * 3 2 1 34 34 H 1.08997 * 109.47269 * 59.99898 * 3 2 1 35 35 H 1.09005 * 109.46266 * 60.00630 * 5 4 2 36 36 H 1.08998 * 109.47015 * 300.00777 * 5 4 2 37 37 H 1.09007 * 109.47386 * 305.00649 * 6 5 4 38 38 H 1.09001 * 109.47502 * 185.00643 * 6 5 4 39 39 H 0.97002 * 120.00465 * 5.04039 * 8 7 6 40 40 H 1.07998 * 126.12835 * 359.97438 * 12 11 9 41 41 H 1.08007 * 120.08158 * 359.96307 * 14 13 12 42 42 H 1.07995 * 119.70003 * 180.02562 * 15 14 13 43 43 H 1.07992 * 119.68643 * 180.02562 * 16 15 14 44 44 H 1.08002 * 120.08579 * 179.97438 * 17 16 15 45 45 H 0.96995 * 120.00113 * 359.72416 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.2001 -2.0782 0.9887 6 6 2.7080 -2.6926 2.2945 7 8 1.6998 -2.5746 3.3002 8 7 2.1100 -3.0159 4.5817 9 6 1.2242 -3.0540 5.5968 10 8 0.0534 -2.7940 5.3926 11 6 1.6726 -3.4094 6.9497 12 6 0.9064 -3.3591 8.0737 13 6 1.7111 -3.7736 9.1639 14 6 1.4714 -3.9159 10.5361 15 6 2.4717 -4.3483 11.3593 16 6 3.7272 -4.6496 10.8482 17 6 3.9872 -4.5173 9.5009 18 6 2.9844 -4.0787 8.6428 19 7 2.9384 -3.8523 7.2840 20 6 3.9772 -4.0305 6.4104 21 1 3.8252 -4.5863 5.4969 22 6 5.2277 -3.4963 6.6992 23 7 6.3078 -4.0368 6.1831 24 14 5.3712 -2.0051 7.8151 25 1 6.7899 -1.5712 7.8812 26 1 4.5403 -0.8999 7.2736 27 1 4.8977 -2.3589 9.1774 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 2.9320 -2.2466 0.1986 36 1 1.2538 -2.5433 0.7125 37 1 3.6068 -2.1674 2.6178 38 1 2.9402 -3.7455 2.1346 39 1 3.0285 -3.2908 4.7289 40 1 -0.1281 -3.0533 8.1260 41 1 0.4979 -3.6841 10.9425 42 1 2.2844 -4.4578 12.4172 43 1 4.5073 -4.9908 11.5125 44 1 4.9670 -4.7537 9.1129 45 1 6.2333 -4.8111 5.6037 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812806481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:31 Heat of formation + Delta-G solvation = -38.009905 kcal Electronic energy + Delta-G solvation = -28448.171091 eV Core-core repulsion = 24432.806513 eV Total energy + Delta-G solvation = -4015.364578 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.48450 -40.31980 -39.57600 -38.16909 -37.78103 -35.62358 -34.30704 -33.26533 -32.94843 -30.83144 -30.33306 -29.46595 -28.14798 -26.42677 -24.90965 -23.89383 -22.74064 -22.30967 -22.04522 -21.03573 -20.70534 -19.16894 -18.48796 -18.09045 -17.66682 -16.96924 -16.56454 -16.55386 -16.35668 -16.12691 -15.83038 -15.57011 -15.26982 -14.92641 -14.70043 -14.61681 -14.54364 -14.32504 -14.07686 -13.67653 -13.64878 -13.30291 -13.03266 -12.93275 -12.57728 -12.45894 -12.41412 -12.26482 -12.25013 -12.18139 -11.94227 -11.63627 -11.54487 -11.39209 -11.18503 -10.62784 -10.42589 -10.05714 -9.49273 -8.97364 -8.60729 -6.76670 -0.06764 0.81269 0.92309 1.17916 1.33805 1.37535 1.58532 2.08577 2.25497 2.35072 2.58330 2.69423 3.16945 3.41549 3.69829 3.79979 3.97609 4.00046 4.05344 4.09144 4.20394 4.25972 4.34224 4.35715 4.39895 4.53411 4.60709 4.67828 4.69725 4.82146 4.83473 4.86071 4.89824 5.02091 5.12280 5.23533 5.24159 5.28567 5.36302 5.62616 5.63725 5.74645 5.84032 5.95453 6.05286 6.20451 6.25030 6.36380 6.63661 7.13529 7.20502 7.99956 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015792 B = 0.003279 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.579908 B = 8537.362664 C = 9496.053866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.072 3.928 3 C -0.148 4.148 4 O -0.408 6.408 5 C 0.076 3.924 6 C 0.024 3.976 7 O -0.167 6.167 8 N -0.587 5.587 9 C 0.600 3.400 10 O -0.568 6.568 11 C -0.036 4.036 12 C -0.146 4.146 13 C -0.145 4.145 14 C -0.074 4.074 15 C -0.150 4.150 16 C -0.108 4.108 17 C -0.128 4.128 18 C 0.058 3.942 19 N -0.296 5.296 20 C -0.463 4.463 21 H 0.090 0.910 22 C 0.043 3.957 23 N -0.835 5.835 24 Si 1.039 2.961 25 H -0.265 1.265 26 H -0.285 1.285 27 H -0.234 1.234 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.047 0.953 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.423 0.577 40 H 0.155 0.845 41 H 0.145 0.855 42 H 0.156 0.844 43 H 0.149 0.851 44 H 0.104 0.896 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.837 3.471 -5.259 6.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.015 3.985 3 C -0.206 4.206 4 O -0.329 6.329 5 C -0.002 4.002 6 C -0.052 4.052 7 O -0.171 6.171 8 N -0.296 5.296 9 C 0.390 3.610 10 O -0.448 6.448 11 C -0.149 4.149 12 C -0.174 4.174 13 C -0.150 4.150 14 C -0.093 4.093 15 C -0.168 4.168 16 C -0.128 4.128 17 C -0.148 4.148 18 C -0.055 4.055 19 N 0.036 4.964 20 C -0.589 4.589 21 H 0.107 0.893 22 C -0.172 4.172 23 N -0.461 5.461 24 Si 0.859 3.141 25 H -0.189 1.189 26 H -0.211 1.211 27 H -0.157 1.157 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.067 0.933 35 H 0.127 0.873 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.276 0.724 40 H 0.172 0.828 41 H 0.162 0.838 42 H 0.174 0.826 43 H 0.167 0.833 44 H 0.122 0.878 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.350 4.788 -5.009 7.317 hybrid contribution -0.323 -1.566 -1.721 2.349 sum -2.672 3.221 -6.730 7.925 Atomic orbital electron populations 1.22297 0.95866 1.02209 1.02784 1.22363 0.93997 0.94417 0.87754 1.21888 1.01708 0.93970 1.02987 1.88027 1.86951 1.20174 1.37743 1.22586 1.01838 0.81790 0.93958 1.23354 0.92300 1.01774 0.87817 1.90491 1.34359 1.84745 1.07553 1.48453 1.14450 1.67081 0.99627 1.17336 0.84580 0.76853 0.82214 1.90703 1.17773 1.52561 1.83741 1.20268 0.89533 1.12344 0.92786 1.20772 0.99780 1.07510 0.89338 1.18367 0.92905 1.08603 0.95113 1.20625 1.00453 0.98353 0.89826 1.20897 0.92565 1.02584 1.00796 1.21160 0.98470 1.00134 0.92996 1.20242 0.97157 1.03621 0.93761 1.18954 0.97028 1.05062 0.84440 1.40267 1.07499 1.43576 1.05038 1.20411 0.90272 1.41836 1.06374 0.89311 1.27174 0.89918 1.01077 0.99064 1.70889 1.29392 1.20293 1.25546 0.84060 0.77703 0.73863 0.78448 1.18894 1.21094 1.15711 0.93648 0.89214 0.93014 0.89877 0.92085 0.88713 0.93338 0.87325 0.91714 0.91622 0.89017 0.72398 0.82774 0.83752 0.82641 0.83344 0.87766 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.49 9.53 71.98 0.69 -2.81 16 2 C 0.07 1.47 3.34 30.60 0.10 1.57 16 3 C -0.15 -2.69 9.56 71.99 0.69 -2.00 16 4 O -0.41 -11.79 9.95 -144.34 -1.44 -13.23 16 5 C 0.08 1.84 6.13 71.98 0.44 2.28 16 6 C 0.02 0.75 6.61 71.98 0.48 1.23 16 7 O -0.17 -7.03 11.08 -16.52 -0.18 -7.21 16 8 N -0.59 -26.80 6.33 -176.25 -1.11 -27.92 16 9 C 0.60 29.79 7.91 86.51 0.68 30.48 16 10 O -0.57 -30.26 17.26 13.06 0.23 -30.03 16 11 C -0.04 -1.76 6.77 39.91 0.27 -1.49 16 12 C -0.15 -6.39 10.55 22.63 0.24 -6.15 16 13 C -0.15 -6.01 6.16 -21.33 -0.13 -6.15 16 14 C -0.07 -2.40 10.06 22.31 0.22 -2.18 16 15 C -0.15 -4.28 9.97 22.03 0.22 -4.06 16 16 C -0.11 -3.43 10.02 22.33 0.22 -3.21 16 17 C -0.13 -5.18 7.25 22.38 0.16 -5.02 16 18 C 0.06 2.63 5.20 39.06 0.20 2.84 16 19 N -0.30 -14.36 2.24 -331.34 -0.74 -15.10 16 20 C -0.46 -22.78 7.67 84.09 0.64 -22.14 16 21 H 0.09 4.47 6.88 -2.91 -0.02 4.45 16 22 C 0.04 2.09 4.73 84.95 0.40 2.49 16 23 N -0.84 -41.33 13.69 21.67 0.30 -41.03 16 24 Si 1.04 45.73 26.71 68.60 1.83 47.57 16 25 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 26 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 27 H -0.23 -9.82 5.31 99.48 0.53 -9.29 16 28 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 1.08 7.87 -2.39 -0.02 1.06 16 31 H 0.08 1.27 7.79 -2.38 -0.02 1.25 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.11 1.79 8.09 -2.38 -0.02 1.77 16 36 H 0.06 1.50 7.87 -2.39 -0.02 1.48 16 37 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 38 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.42 18.99 4.51 -92.71 -0.42 18.57 16 40 H 0.15 6.10 8.06 -2.91 -0.02 6.08 16 41 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 42 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16 43 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 44 H 0.10 4.42 7.09 -2.91 -0.02 4.40 16 45 H 0.28 13.70 8.73 -92.71 -0.81 12.90 16 Total: -1.00 -65.80 376.29 4.78 -61.02 By element: Atomic # 1 Polarization: 39.89 SS G_CDS: 0.37 Total: 40.26 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 5.53 Total: -14.31 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -1.56 Total: -84.06 kcal Atomic # 8 Polarization: -49.08 SS G_CDS: -1.39 Total: -50.47 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.83 Total: 47.57 kcal Total: -65.80 4.78 -61.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812806481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.010 kcal (2) G-P(sol) polarization free energy of solvation -65.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds