Wall clock time and date at job start Tue Mar 31 2020 16:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47526 * 2 1 4 4 O 1.21284 * 119.99943 * 359.97438 * 3 2 1 5 5 N 1.34774 * 120.00617 * 179.97438 * 3 2 1 6 6 C 1.47585 * 127.39042 * 359.97438 * 5 3 2 7 7 C 1.53893 * 104.91161 * 151.22999 * 6 5 3 8 8 N 1.47163 * 106.13956 * 17.39974 * 7 6 5 9 9 C 1.34780 * 126.25375 * 180.72989 * 8 7 6 10 10 O 1.21283 * 120.00316 * 180.02562 * 9 8 7 11 11 C 1.50700 * 119.99615 * 0.02562 * 9 8 7 12 12 C 1.50701 * 109.47133 * 180.02562 * 11 9 8 13 13 C 1.38302 * 119.93101 * 89.99638 * 12 11 9 14 14 C 1.38105 * 120.06695 * 180.02562 * 13 12 11 15 15 C 1.38871 * 119.93200 * 359.97438 * 14 13 12 16 16 O 1.35753 * 120.07178 * 180.02562 * 15 14 13 17 17 C 1.34831 * 116.99766 * 354.46580 * 16 15 14 18 18 H 1.08005 * 119.99910 * 5.05947 * 17 16 15 19 19 C 1.38653 * 120.00325 * 185.05796 * 17 16 15 20 20 N 1.31555 * 119.99726 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00359 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47048 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47375 * 119.99721 * 21 19 17 24 24 H 1.48506 * 109.46808 * 239.99931 * 21 19 17 25 25 C 1.38880 * 119.86456 * 0.27348 * 15 14 13 26 26 C 1.38102 * 119.92774 * 359.49328 * 25 15 14 27 27 C 1.46952 * 107.49801 * 0.98781 * 8 7 6 28 28 H 1.08998 * 109.47459 * 300.00711 * 1 2 3 29 29 H 1.09006 * 109.46860 * 60.00434 * 1 2 3 30 30 H 1.08995 * 109.47176 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47316 * 239.99958 * 2 1 3 32 32 H 1.08998 * 109.46769 * 119.99899 * 2 1 3 33 33 H 1.08997 * 110.35597 * 32.36907 * 6 5 3 34 34 H 1.09011 * 110.44442 * 270.13386 * 6 5 3 35 35 H 1.09000 * 110.11825 * 258.22978 * 7 6 5 36 36 H 1.09003 * 110.17489 * 136.59662 * 7 6 5 37 37 H 1.08992 * 109.47190 * 60.00076 * 11 9 8 38 38 H 1.09000 * 109.47067 * 299.99957 * 11 9 8 39 39 H 1.08001 * 119.96675 * 0.02562 * 13 12 11 40 40 H 1.07996 * 120.03107 * 179.97438 * 14 13 12 41 41 H 0.97003 * 120.00171 * 179.97438 * 20 19 17 42 42 H 1.08001 * 120.03810 * 179.72208 * 25 15 14 43 43 H 1.07994 * 119.96815 * 180.22560 * 26 25 15 44 44 H 1.09001 * 109.90718 * 100.24603 * 27 8 7 45 45 H 1.09003 * 109.90910 * 221.49498 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.4529 0.6780 0.0017 7 6 5.6207 1.3797 -0.7139 8 7 5.3038 2.8168 -0.7017 9 6 6.0519 3.8025 -1.2358 10 8 5.6807 4.9547 -1.1597 11 6 7.3495 3.4730 -1.9277 12 6 7.9867 4.7424 -2.4314 13 6 8.8629 5.4428 -1.6224 14 6 9.4480 6.6067 -2.0810 15 6 9.1561 7.0733 -3.3560 16 8 9.7300 8.2168 -3.8098 17 6 10.4834 8.9127 -2.9346 18 1 10.6749 8.5129 -1.9497 19 6 11.0124 10.1415 -3.2988 20 7 10.7796 10.6282 -4.4986 21 14 12.0568 11.1053 -2.0864 22 1 12.1682 10.3452 -0.8156 23 1 13.4110 11.3162 -2.6579 24 1 11.4207 12.4209 -1.8218 25 6 8.2719 6.3705 -4.1640 26 6 7.6937 5.2047 -3.7015 27 6 4.0258 2.9814 0.0048 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 4.1561 -0.2170 -0.5451 34 1 4.7334 0.4217 1.0234 35 1 5.7007 1.0221 -1.7405 36 1 6.5532 1.1969 -0.1799 37 1 7.1544 2.8060 -2.7673 38 1 8.0225 2.9836 -1.2237 39 1 9.0898 5.0792 -0.6311 40 1 10.1318 7.1534 -1.4487 41 1 11.1493 11.4881 -4.7534 42 1 8.0394 6.7332 -5.1544 43 1 7.0088 4.6557 -4.3307 44 1 4.2073 3.3051 1.0297 45 1 3.4065 3.7133 -0.5139 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819672325.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:06 Heat of formation + Delta-G solvation = -82.070218 kcal Electronic energy + Delta-G solvation = -27199.531962 eV Core-core repulsion = 23182.256786 eV Total energy + Delta-G solvation = -4017.275176 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.65252 -40.87273 -40.25297 -38.66867 -37.99396 -34.66576 -34.39090 -33.60488 -32.72482 -31.78435 -30.79206 -28.87294 -27.54872 -26.59124 -24.43863 -24.05878 -23.64766 -22.38289 -20.87654 -20.13738 -19.83391 -18.84126 -18.56135 -17.93120 -17.36209 -16.76070 -16.64938 -16.51519 -16.27228 -16.20788 -15.76710 -15.49834 -15.37414 -14.93901 -14.74399 -14.45302 -14.26419 -14.06468 -14.01961 -13.70199 -13.58942 -13.19669 -13.16708 -12.98825 -12.85071 -12.80577 -12.62033 -12.49700 -12.30399 -12.25816 -12.10433 -12.03373 -11.18355 -11.12882 -11.02138 -10.78508 -10.06985 -9.78095 -9.76432 -8.91767 -8.48317 -6.16532 0.60850 0.63148 1.31294 1.33262 1.42719 1.52236 1.53410 1.60690 2.16660 2.21511 2.82101 3.13924 3.42584 3.51261 3.58616 3.79781 3.90788 4.03835 4.10897 4.13798 4.18944 4.20700 4.29267 4.31224 4.41219 4.49112 4.57935 4.62940 4.67891 4.78336 4.80313 4.89665 4.99205 5.00738 5.05756 5.08198 5.14163 5.20413 5.29710 5.36544 5.55504 5.71077 5.76114 6.02186 6.20349 6.31973 6.43453 6.96296 7.00385 7.11413 7.77691 8.75413 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028783 B = 0.001898 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.561786 B =14747.725954 C =14855.317640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C 0.526 3.474 4 O -0.591 6.591 5 N -0.630 5.630 6 C 0.089 3.911 7 C 0.078 3.922 8 N -0.630 5.630 9 C 0.532 3.468 10 O -0.579 6.579 11 C -0.063 4.063 12 C -0.149 4.149 13 C -0.057 4.057 14 C -0.245 4.245 15 C 0.112 3.888 16 O -0.234 6.234 17 C -0.414 4.414 18 H 0.101 0.899 19 C -0.025 4.025 20 N -0.922 5.922 21 Si 1.021 2.979 22 H -0.251 1.251 23 H -0.265 1.265 24 H -0.270 1.270 25 C -0.208 4.208 26 C -0.058 4.058 27 C 0.332 3.668 28 H 0.043 0.957 29 H 0.040 0.960 30 H 0.091 0.909 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.118 0.882 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.118 0.882 41 H 0.273 0.727 42 H 0.111 0.889 43 H 0.145 0.855 44 H 0.075 0.925 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.341 -32.625 11.988 36.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C 0.318 3.682 4 O -0.471 6.471 5 N -0.366 5.366 6 C -0.032 4.032 7 C -0.043 4.043 8 N -0.367 5.367 9 C 0.323 3.677 10 O -0.457 6.457 11 C -0.102 4.102 12 C -0.150 4.150 13 C -0.075 4.075 14 C -0.264 4.264 15 C 0.062 3.938 16 O -0.141 6.141 17 C -0.490 4.490 18 H 0.118 0.882 19 C -0.222 4.222 20 N -0.560 5.560 21 Si 0.840 3.160 22 H -0.175 1.175 23 H -0.189 1.189 24 H -0.195 1.195 25 C -0.227 4.227 26 C -0.076 4.076 27 C 0.123 3.877 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.110 0.890 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.136 0.864 37 H 0.151 0.849 38 H 0.155 0.845 39 H 0.160 0.840 40 H 0.136 0.864 41 H 0.082 0.918 42 H 0.129 0.871 43 H 0.163 0.837 44 H 0.093 0.907 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.978 -31.227 11.649 35.416 hybrid contribution 0.290 1.662 0.089 1.690 sum -11.688 -29.565 11.737 33.889 Atomic orbital electron populations 1.21586 0.93776 1.02935 1.01637 1.21695 0.97668 0.89645 1.07316 1.21551 0.79052 0.93640 0.73920 1.90744 1.55561 1.48944 1.51812 1.48924 1.05998 1.07986 1.73655 1.22943 0.83722 0.92770 1.03776 1.22854 1.00113 0.77345 1.04029 1.48648 1.21587 1.09297 1.57198 1.21085 0.86067 0.83285 0.77300 1.90795 1.73092 1.22226 1.59605 1.20486 0.91677 0.95618 1.02453 1.19262 1.01604 0.99488 0.94672 1.20959 0.94722 0.92734 0.99097 1.21244 1.07426 1.00958 0.96772 1.19947 0.92491 0.87500 0.93838 1.83938 1.58900 1.31535 1.39737 1.21876 1.28556 1.01715 0.96834 0.88156 1.26632 0.99329 0.96824 0.99449 1.70197 1.45162 1.19734 1.20917 0.84506 0.77003 0.77480 0.77033 1.17459 1.18942 1.19543 1.20442 1.02358 0.99108 1.00839 1.20880 0.96918 0.93738 0.96021 1.21182 0.83284 0.86607 0.96645 0.93738 0.94056 0.88990 0.85688 0.85436 0.85146 0.87518 0.87977 0.86400 0.84855 0.84467 0.84019 0.86428 0.91846 0.87130 0.83714 0.90694 0.93687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.20 71.98 0.66 -0.71 16 2 C -0.12 -0.73 5.50 29.85 0.16 -0.57 16 3 C 0.53 8.96 7.90 87.66 0.69 9.66 16 4 O -0.59 -17.14 16.29 -3.04 -0.05 -17.19 16 5 N -0.63 -8.55 3.37 -825.75 -2.78 -11.33 16 6 C 0.09 0.16 6.90 86.47 0.60 0.75 16 7 C 0.08 0.31 6.74 86.55 0.58 0.90 16 8 N -0.63 -10.78 3.35 -827.30 -2.77 -13.55 16 9 C 0.53 13.23 7.86 87.66 0.69 13.92 16 10 O -0.58 -22.20 16.38 -3.04 -0.05 -22.25 16 11 C -0.06 -1.17 5.06 29.10 0.15 -1.02 16 12 C -0.15 -4.68 4.38 -19.83 -0.09 -4.77 16 13 C -0.06 -2.04 9.69 22.25 0.22 -1.82 16 14 C -0.24 -11.27 9.17 22.39 0.21 -11.06 16 15 C 0.11 5.94 6.65 22.58 0.15 6.09 16 16 O -0.23 -14.81 9.76 -22.78 -0.22 -15.03 16 17 C -0.41 -25.14 9.49 67.92 0.64 -24.50 16 18 H 0.10 5.62 5.20 -2.91 -0.02 5.61 16 19 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16 20 N -0.92 -58.44 13.67 21.61 0.30 -58.15 16 21 Si 1.02 44.43 29.55 68.60 2.03 46.46 16 22 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 23 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 C -0.21 -9.50 9.99 22.39 0.22 -9.28 16 26 C -0.06 -2.04 9.69 22.25 0.22 -1.83 16 27 C 0.33 6.95 7.12 170.42 1.21 8.17 16 28 H 0.04 0.59 8.10 -2.39 -0.02 0.57 16 29 H 0.04 0.58 8.10 -2.38 -0.02 0.56 16 30 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.13 0.04 7.94 -2.38 -0.02 0.03 16 32 H 0.13 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.13 -0.65 7.52 -2.39 -0.02 -0.66 16 34 H 0.11 -0.21 8.14 -2.38 -0.02 -0.23 16 35 H 0.10 0.06 8.14 -2.39 -0.02 0.05 16 36 H 0.12 -0.14 8.14 -2.39 -0.02 -0.16 16 37 H 0.13 1.54 8.08 -2.39 -0.02 1.52 16 38 H 0.14 1.49 8.08 -2.39 -0.02 1.47 16 39 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 40 H 0.12 5.49 5.64 -2.91 -0.02 5.47 16 41 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 42 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 43 H 0.15 4.03 8.06 -2.91 -0.02 4.00 16 44 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.04 1.35 7.96 -2.39 -0.02 1.33 16 Total: -1.00 -97.31 382.50 4.23 -93.08 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 1.00 Total: 15.06 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: 6.78 Total: -17.09 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -5.26 Total: -83.04 kcal Atomic # 8 Polarization: -54.15 SS G_CDS: -0.32 Total: -54.47 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -97.31 4.23 -93.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819672325.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.009 kcal (2) G-P(sol) polarization free energy of solvation -97.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds