Wall clock time and date at job start Tue Mar 31 2020 18:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46899 * 109.46986 * 120.00260 * 2 1 3 13 13 C 1.46898 * 110.99994 * 58.95482 * 12 2 1 14 14 C 1.46897 * 111.00047 * 294.99841 * 12 2 1 15 15 C 1.52998 * 109.47450 * 189.99994 * 14 12 2 16 16 C 1.52995 * 109.47438 * 180.02562 * 15 14 12 17 17 O 1.42900 * 109.47169 * 180.02562 * 16 15 14 18 18 N 1.41598 * 114.00003 * 179.97438 * 17 16 15 19 19 C 1.34526 * 124.46224 * 269.69450 * 18 17 16 20 20 O 1.21446 * 125.70487 * 0.04053 * 19 18 17 21 21 C 1.47816 * 108.58111 * 179.90513 * 19 18 17 22 22 C 1.38557 * 134.29890 * 180.12901 * 21 19 18 23 23 C 1.38615 * 119.72093 * 180.29178 * 22 21 19 24 24 C 1.38230 * 120.45800 * 359.95498 * 23 22 21 25 25 C 1.38609 * 120.45660 * 0.02562 * 24 23 22 26 26 C 1.38556 * 119.72530 * 0.02562 * 25 24 23 27 27 C 1.34525 * 124.45724 * 90.00032 * 18 17 16 28 28 O 1.21445 * 125.71547 * 359.94246 * 27 18 17 29 29 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 30 30 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 31 31 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 32 32 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 33 33 H 1.09001 * 109.46769 * 60.00231 * 13 12 2 34 34 H 1.09001 * 109.47197 * 179.97438 * 13 12 2 35 35 H 1.08992 * 109.47280 * 300.00119 * 13 12 2 36 36 H 1.08996 * 109.47679 * 310.00410 * 14 12 2 37 37 H 1.09002 * 109.47046 * 70.00058 * 14 12 2 38 38 H 1.08996 * 109.47019 * 300.00820 * 15 14 12 39 39 H 1.09002 * 109.46943 * 60.00001 * 15 14 12 40 40 H 1.09004 * 109.46853 * 300.00115 * 16 15 14 41 41 H 1.08997 * 109.47116 * 60.00364 * 16 15 14 42 42 H 1.08003 * 120.14101 * 0.24529 * 22 21 19 43 43 H 1.08004 * 119.76919 * 179.97438 * 23 22 21 44 44 H 1.07998 * 119.76900 * 180.02562 * 24 23 22 45 45 H 1.08007 * 120.13690 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0197 -0.6926 1.1994 13 6 1.5284 -2.0761 1.2458 14 6 1.6488 0.0390 2.4180 15 6 2.3789 -0.5664 3.6186 16 6 1.9921 0.1952 4.8879 17 8 2.6745 -0.3699 6.0091 18 7 2.3846 0.2665 7.2403 19 6 3.0781 1.3041 7.7427 20 8 4.0367 1.8355 7.2198 21 6 2.4759 1.6910 9.0360 22 6 2.7555 2.6653 9.9807 23 6 1.9757 2.7589 11.1229 24 6 0.9215 1.8879 11.3249 25 6 0.6299 0.9085 10.3884 26 6 1.4014 0.8024 9.2424 27 6 1.3831 -0.0905 8.0645 28 8 0.5958 -0.9952 7.8730 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.9111 -0.5221 -4.4375 33 1 1.8764 -2.6150 0.3646 34 1 1.9061 -2.5659 2.1434 35 1 0.4386 -2.0743 1.2638 36 1 1.9297 1.0869 2.3126 37 1 0.5723 -0.0346 2.5725 38 1 2.0979 -1.6142 3.7240 39 1 3.4554 -0.4927 3.4641 40 1 2.2728 1.2432 4.7826 41 1 0.9156 0.1211 5.0422 42 1 3.5779 3.3485 9.8281 43 1 2.1932 3.5178 11.8599 44 1 0.3210 1.9711 12.2187 45 1 -0.1947 0.2304 10.5517 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828041106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:57 Heat of formation + Delta-G solvation = 13.316014 kcal Electronic energy + Delta-G solvation = -27555.473229 eV Core-core repulsion = 23542.334311 eV Total energy + Delta-G solvation = -4013.138919 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.56524 -39.17139 -39.06935 -38.03398 -37.28240 -35.67649 -33.40118 -31.97798 -31.80092 -30.78594 -29.26879 -26.43838 -25.67597 -25.23080 -24.54035 -23.64516 -22.73903 -21.16165 -20.83461 -19.28471 -18.53922 -18.33613 -17.31227 -17.17809 -16.62641 -16.04033 -15.68426 -15.66242 -15.40163 -15.06161 -14.91369 -14.66606 -14.44652 -14.23020 -14.13080 -13.38509 -13.21678 -13.18423 -12.97816 -12.61127 -12.30194 -12.24156 -12.11779 -11.59545 -11.46693 -11.25650 -11.09280 -11.01529 -10.79971 -10.62445 -10.47603 -10.30148 -10.14411 -9.99686 -9.89233 -9.88618 -9.51526 -9.04185 -8.59080 -7.38135 -6.06618 -4.04885 -0.54444 0.31505 0.81688 1.44067 2.42147 2.95117 3.03806 3.24963 3.35148 3.37828 3.52992 3.78403 3.93239 4.23075 4.39059 4.40991 4.54344 4.67541 4.72139 4.82257 4.97858 5.11399 5.21213 5.24417 5.25140 5.37861 5.43832 5.53022 5.56106 5.81221 5.89950 5.90849 6.03406 6.08479 6.15171 6.20719 6.27893 6.34141 6.37953 6.53575 6.70040 6.71384 6.90643 7.19224 7.30748 7.60639 7.90809 8.05158 8.64921 9.00764 9.55116 11.06361 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024979 B = 0.002047 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.672164 B =13673.418192 C =13842.032595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.181 3.819 3 H 0.040 0.960 4 C -0.502 4.502 5 H 0.083 0.917 6 C 0.069 3.931 7 N -0.899 5.899 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.269 1.269 11 H -0.296 1.296 12 N -0.522 5.522 13 C 0.029 3.971 14 C 0.058 3.942 15 C -0.106 4.106 16 C 0.023 3.977 17 O -0.102 6.102 18 N -0.448 5.448 19 C 0.572 3.428 20 O -0.443 6.443 21 C -0.131 4.131 22 C -0.041 4.041 23 C -0.093 4.093 24 C -0.094 4.094 25 C -0.041 4.041 26 C -0.131 4.131 27 C 0.573 3.427 28 O -0.446 6.446 29 H 0.028 0.972 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.264 0.736 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.019 0.981 36 H 0.070 0.930 37 H 0.030 0.970 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.481 7.807 34.168 35.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.073 3.927 3 H 0.058 0.942 4 C -0.541 4.541 5 H 0.101 0.899 6 C -0.133 4.133 7 N -0.537 5.537 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.194 1.194 11 H -0.224 1.224 12 N -0.245 5.245 13 C -0.120 4.120 14 C -0.072 4.072 15 C -0.146 4.146 16 C -0.054 4.054 17 O -0.103 6.103 18 N -0.234 5.234 19 C 0.362 3.638 20 O -0.312 6.312 21 C -0.135 4.135 22 C -0.060 4.060 23 C -0.111 4.111 24 C -0.112 4.112 25 C -0.060 4.060 26 C -0.135 4.135 27 C 0.362 3.638 28 O -0.314 6.314 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.037 0.963 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.164 0.836 43 H 0.163 0.837 44 H 0.163 0.837 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.701 7.373 33.434 34.343 hybrid contribution -1.686 0.865 -0.569 1.978 sum -4.387 8.239 32.865 34.165 Atomic orbital electron populations 1.22827 1.01756 1.01090 0.98888 1.19802 0.88681 0.95350 0.88841 0.94226 1.20941 1.31514 1.13840 0.87762 0.89899 1.24924 0.95925 0.96596 0.95842 1.69878 1.45645 1.40361 0.97854 0.86879 0.80496 0.83936 0.76944 1.20831 1.19384 1.22393 1.62125 1.59306 1.02154 1.00965 1.22358 0.97092 0.90624 1.01876 1.21920 0.96580 0.98434 0.90224 1.21535 1.03185 1.00110 0.89731 1.23409 0.97358 0.99340 0.85327 1.90852 1.66538 1.48543 1.04392 1.48220 1.31144 1.32121 1.11963 1.18575 0.82346 0.78079 0.84839 1.90855 1.23155 1.53185 1.63978 1.20370 0.98017 0.99399 0.95682 1.20849 0.98751 0.95208 0.91183 1.21516 0.94188 0.98770 0.96672 1.21511 0.96979 0.93726 0.98961 1.20841 0.97673 0.97151 0.90344 1.20368 0.99079 0.97738 0.96343 1.18576 0.79179 0.83372 0.82650 1.90845 1.37553 1.27746 1.75298 0.95326 0.93676 0.92441 0.92629 0.90031 0.93308 0.96276 0.91139 0.95238 0.90409 0.89510 0.91363 0.91636 0.83620 0.83723 0.83735 0.83658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.09 7.98 37.16 0.30 -3.80 16 2 C 0.18 4.30 1.93 -68.86 -0.13 4.16 16 3 H 0.04 0.98 7.09 -51.93 -0.37 0.61 16 4 C -0.50 -14.08 8.52 -34.44 -0.29 -14.37 16 5 H 0.08 2.53 6.99 -52.49 -0.37 2.16 16 6 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 7 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 8 Si 0.89 22.04 24.37 -169.99 -4.14 17.90 16 9 H -0.28 -6.83 6.88 56.52 0.39 -6.44 16 10 H -0.27 -6.40 6.52 56.52 0.37 -6.03 16 11 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 12 N -0.52 -10.83 4.74 -236.29 -1.12 -11.95 16 13 C 0.03 0.55 8.70 60.06 0.52 1.07 16 14 C 0.06 0.97 4.40 -3.83 -0.02 0.95 16 15 C -0.11 -1.56 5.51 -26.73 -0.15 -1.70 16 16 C 0.02 0.31 6.40 37.16 0.24 0.55 16 17 O -0.10 -1.49 11.36 -27.91 -0.32 -1.80 16 18 N -0.45 -5.75 3.16 -13.25 -0.04 -5.79 16 19 C 0.57 6.75 8.24 -12.45 -0.10 6.64 16 20 O -0.44 -6.37 18.02 -0.77 -0.01 -6.38 16 21 C -0.13 -1.07 6.40 -104.83 -0.67 -1.74 16 22 C -0.04 -0.20 10.09 -39.32 -0.40 -0.60 16 23 C -0.09 -0.24 10.04 -39.45 -0.40 -0.64 16 24 C -0.09 -0.24 10.04 -39.45 -0.40 -0.63 16 25 C -0.04 -0.20 10.09 -39.33 -0.40 -0.60 16 26 C -0.13 -1.07 6.41 -104.83 -0.67 -1.74 16 27 C 0.57 6.71 8.24 -12.45 -0.10 6.61 16 28 O -0.45 -6.32 18.02 -0.76 -0.01 -6.34 16 29 H 0.03 0.54 6.75 -51.93 -0.35 0.19 16 30 H 0.04 1.03 3.28 -51.93 -0.17 0.86 16 31 H 0.06 1.24 6.39 -51.93 -0.33 0.91 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.08 1.75 6.53 -51.93 -0.34 1.41 16 34 H 0.05 0.81 6.30 -51.93 -0.33 0.49 16 35 H 0.02 0.36 6.28 -51.93 -0.33 0.03 16 36 H 0.07 1.16 8.00 -51.93 -0.42 0.75 16 37 H 0.03 0.48 6.94 -51.93 -0.36 0.12 16 38 H 0.08 1.13 6.47 -51.93 -0.34 0.80 16 39 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.15 0.50 8.06 -52.48 -0.42 0.08 16 43 H 0.14 -0.04 8.06 -52.48 -0.42 -0.46 16 44 H 0.14 -0.04 8.06 -52.49 -0.42 -0.47 16 45 H 0.15 0.49 8.06 -52.48 -0.42 0.07 16 LS Contribution 368.54 15.07 5.55 5.55 Total: -1.00 -34.46 368.54 -7.92 -42.38 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -5.83 Total: -2.89 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -2.76 Total: -3.94 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: -0.39 Total: -44.48 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.34 Total: -14.52 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.14 Total: 17.90 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.46 -7.92 -42.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828041106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.691 kcal (2) G-P(sol) polarization free energy of solvation -34.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds