Wall clock time and date at job start Tue Mar 31 2020 18:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46899 * 109.46986 * 120.00260 * 2 1 3 13 13 C 1.46898 * 110.99994 * 58.95482 * 12 2 1 14 14 C 1.46897 * 111.00047 * 294.99841 * 12 2 1 15 15 C 1.52998 * 109.47450 * 189.99994 * 14 12 2 16 16 C 1.52995 * 109.47438 * 180.02562 * 15 14 12 17 17 O 1.42900 * 109.47169 * 180.02562 * 16 15 14 18 18 N 1.41598 * 114.00003 * 179.97438 * 17 16 15 19 19 C 1.34526 * 124.46224 * 269.69450 * 18 17 16 20 20 O 1.21446 * 125.70487 * 0.04053 * 19 18 17 21 21 C 1.47816 * 108.58111 * 179.90513 * 19 18 17 22 22 C 1.38557 * 134.29890 * 180.12901 * 21 19 18 23 23 C 1.38615 * 119.72093 * 180.29178 * 22 21 19 24 24 C 1.38230 * 120.45800 * 359.95498 * 23 22 21 25 25 C 1.38609 * 120.45660 * 0.02562 * 24 23 22 26 26 C 1.38556 * 119.72530 * 0.02562 * 25 24 23 27 27 C 1.34525 * 124.45724 * 90.00032 * 18 17 16 28 28 O 1.21445 * 125.71547 * 359.94246 * 27 18 17 29 29 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 30 30 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 31 31 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 32 32 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 33 33 H 1.09001 * 109.46769 * 60.00231 * 13 12 2 34 34 H 1.09001 * 109.47197 * 179.97438 * 13 12 2 35 35 H 1.08992 * 109.47280 * 300.00119 * 13 12 2 36 36 H 1.08996 * 109.47679 * 310.00410 * 14 12 2 37 37 H 1.09002 * 109.47046 * 70.00058 * 14 12 2 38 38 H 1.08996 * 109.47019 * 300.00820 * 15 14 12 39 39 H 1.09002 * 109.46943 * 60.00001 * 15 14 12 40 40 H 1.09004 * 109.46853 * 300.00115 * 16 15 14 41 41 H 1.08997 * 109.47116 * 60.00364 * 16 15 14 42 42 H 1.08003 * 120.14101 * 0.24529 * 22 21 19 43 43 H 1.08004 * 119.76919 * 179.97438 * 23 22 21 44 44 H 1.07998 * 119.76900 * 180.02562 * 24 23 22 45 45 H 1.08007 * 120.13690 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0197 -0.6926 1.1994 13 6 1.5284 -2.0761 1.2458 14 6 1.6488 0.0390 2.4180 15 6 2.3789 -0.5664 3.6186 16 6 1.9921 0.1952 4.8879 17 8 2.6745 -0.3699 6.0091 18 7 2.3846 0.2665 7.2403 19 6 3.0781 1.3041 7.7427 20 8 4.0367 1.8355 7.2198 21 6 2.4759 1.6910 9.0360 22 6 2.7555 2.6653 9.9807 23 6 1.9757 2.7589 11.1229 24 6 0.9215 1.8879 11.3249 25 6 0.6299 0.9085 10.3884 26 6 1.4014 0.8024 9.2424 27 6 1.3831 -0.0905 8.0645 28 8 0.5958 -0.9952 7.8730 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.9111 -0.5221 -4.4375 33 1 1.8764 -2.6150 0.3646 34 1 1.9061 -2.5659 2.1434 35 1 0.4386 -2.0743 1.2638 36 1 1.9297 1.0869 2.3126 37 1 0.5723 -0.0346 2.5725 38 1 2.0979 -1.6142 3.7240 39 1 3.4554 -0.4927 3.4641 40 1 2.2728 1.2432 4.7826 41 1 0.9156 0.1211 5.0422 42 1 3.5779 3.3485 9.8281 43 1 2.1932 3.5178 11.8599 44 1 0.3210 1.9711 12.2187 45 1 -0.1947 0.2304 10.5517 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828041106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:56 Heat of formation + Delta-G solvation = -10.765452 kcal Electronic energy + Delta-G solvation = -27556.517480 eV Core-core repulsion = 23542.334311 eV Total energy + Delta-G solvation = -4014.183170 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.33441 -40.01009 -39.84939 -39.41272 -38.44440 -36.57321 -35.11024 -33.60643 -32.17907 -31.68628 -30.79932 -27.89373 -27.17727 -26.41092 -25.68600 -24.55782 -23.34377 -22.60153 -21.53246 -20.95663 -19.51882 -18.97400 -18.71139 -18.17229 -17.87972 -17.15151 -17.08722 -16.58482 -16.53476 -16.04515 -15.73742 -15.57904 -15.50609 -15.41456 -15.08763 -14.89243 -14.85536 -14.22505 -13.86528 -13.78712 -13.76636 -13.28010 -13.23896 -13.11334 -12.75998 -12.69808 -12.51050 -12.36731 -12.17475 -11.90488 -11.79495 -11.66117 -11.49569 -11.42001 -11.23734 -11.07974 -10.77659 -10.27997 -10.26491 -9.01183 -8.28908 -6.31914 -1.16456 -0.12705 -0.02790 0.84369 1.27879 1.34044 1.44038 1.57696 2.30437 2.44566 2.56736 2.58463 3.00468 3.04753 3.25011 3.49918 3.69656 3.83213 4.01117 4.04183 4.12559 4.15795 4.19692 4.27225 4.37875 4.41540 4.45258 4.49740 4.61115 4.63672 4.78599 4.81983 4.82640 4.84018 4.93482 4.98714 5.15647 5.21186 5.21527 5.25470 5.27929 5.40387 5.59880 5.67231 5.86696 6.00634 6.33852 6.39356 6.65927 6.74423 7.32386 8.87774 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024979 B = 0.002047 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.672164 B =13673.418192 C =13842.032595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.183 3.817 3 H 0.035 0.965 4 C -0.504 4.504 5 H 0.040 0.960 6 C 0.009 3.991 7 N -0.948 5.948 8 Si 0.951 3.049 9 H -0.268 1.268 10 H -0.248 1.248 11 H -0.298 1.298 12 N -0.541 5.541 13 C 0.035 3.965 14 C 0.061 3.939 15 C -0.096 4.096 16 C 0.033 3.967 17 O -0.129 6.129 18 N -0.456 5.456 19 C 0.569 3.431 20 O -0.483 6.483 21 C -0.150 4.150 22 C -0.037 4.037 23 C -0.076 4.076 24 C -0.076 4.076 25 C -0.036 4.036 26 C -0.150 4.150 27 C 0.570 3.430 28 O -0.483 6.483 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.055 0.945 32 H 0.265 0.735 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.028 0.972 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.159 0.841 43 H 0.186 0.814 44 H 0.186 0.814 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.558 10.565 38.693 40.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.075 3.925 3 H 0.053 0.947 4 C -0.543 4.543 5 H 0.058 0.942 6 C -0.188 4.188 7 N -0.589 5.589 8 Si 0.778 3.222 9 H -0.194 1.194 10 H -0.172 1.172 11 H -0.226 1.226 12 N -0.265 5.265 13 C -0.113 4.113 14 C -0.068 4.068 15 C -0.135 4.135 16 C -0.044 4.044 17 O -0.131 6.131 18 N -0.243 5.243 19 C 0.361 3.639 20 O -0.354 6.354 21 C -0.154 4.154 22 C -0.055 4.055 23 C -0.093 4.093 24 C -0.093 4.093 25 C -0.055 4.055 26 C -0.154 4.154 27 C 0.362 3.638 28 O -0.354 6.354 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.177 0.823 43 H 0.203 0.797 44 H 0.203 0.797 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.783 10.132 38.004 39.621 hybrid contribution -0.972 -0.023 -1.762 2.012 sum -5.754 10.109 36.242 38.063 Atomic orbital electron populations 1.22695 0.99795 1.01425 1.00088 1.19601 0.90084 0.94515 0.88312 0.94682 1.21186 1.30461 1.12625 0.89990 0.94197 1.25797 0.97574 1.00025 0.95383 1.70037 1.47774 1.42579 0.98525 0.85825 0.78934 0.80052 0.77356 1.19438 1.17225 1.22617 1.61986 1.60106 1.02817 1.01560 1.22277 0.97546 0.89943 1.01571 1.21938 0.97604 0.98285 0.88957 1.21349 1.02263 1.00185 0.89724 1.23247 0.97539 0.99042 0.84614 1.90769 1.67127 1.49595 1.05615 1.48589 1.31951 1.32546 1.11211 1.19285 0.81587 0.77141 0.85850 1.90816 1.24877 1.54408 1.65340 1.20196 0.98670 1.01632 0.94881 1.21223 0.99272 0.94047 0.90986 1.22031 0.92668 0.98801 0.95816 1.22030 0.96562 0.91668 0.99054 1.21221 0.97194 0.97786 0.89277 1.20199 1.00923 0.97688 0.96563 1.19263 0.78050 0.83153 0.83297 1.90807 1.38842 1.29499 1.76286 0.91984 0.94425 0.92649 0.92566 0.93282 0.90742 0.95401 0.90649 0.93830 0.90331 0.90523 0.91083 0.90957 0.82340 0.79676 0.79653 0.82267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.57 7.98 71.99 0.57 -7.00 16 2 C 0.18 8.63 1.93 44.17 0.09 8.72 16 3 H 0.04 1.70 7.09 -2.39 -0.02 1.68 16 4 C -0.50 -29.14 8.52 25.60 0.22 -28.92 16 5 H 0.04 2.58 6.99 -2.91 -0.02 2.56 16 6 C 0.01 0.54 5.45 84.65 0.46 1.00 16 7 N -0.95 -60.11 13.96 21.45 0.30 -59.81 16 8 Si 0.95 45.37 24.37 68.60 1.67 47.04 16 9 H -0.27 -12.17 6.88 99.48 0.68 -11.48 16 10 H -0.25 -10.94 6.52 99.48 0.65 -10.29 16 11 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 12 N -0.54 -22.39 4.74 -901.48 -4.27 -26.67 16 13 C 0.03 1.35 8.70 127.69 1.11 2.46 16 14 C 0.06 1.96 4.40 86.30 0.38 2.34 16 15 C -0.10 -2.79 5.51 30.59 0.17 -2.62 16 16 C 0.03 0.89 6.40 71.98 0.46 1.35 16 17 O -0.13 -3.92 11.36 -23.06 -0.26 -4.18 16 18 N -0.46 -12.20 3.16 -432.75 -1.37 -13.57 16 19 C 0.57 13.88 8.24 86.82 0.72 14.59 16 20 O -0.48 -14.52 18.02 2.36 0.04 -14.48 16 21 C -0.15 -2.29 6.40 -20.00 -0.13 -2.42 16 22 C -0.04 -0.25 10.09 22.44 0.23 -0.02 16 23 C -0.08 0.02 10.04 22.36 0.22 0.25 16 24 C -0.08 0.03 10.04 22.36 0.22 0.25 16 25 C -0.04 -0.24 10.09 22.43 0.23 -0.01 16 26 C -0.15 -2.26 6.41 -20.00 -0.13 -2.39 16 27 C 0.57 13.69 8.24 86.82 0.72 14.40 16 28 O -0.48 -14.13 18.02 2.36 0.04 -14.09 16 29 H 0.06 2.16 6.75 -2.39 -0.02 2.15 16 30 H 0.04 1.62 3.28 -2.39 -0.01 1.61 16 31 H 0.05 2.31 6.39 -2.39 -0.02 2.29 16 32 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 33 H 0.05 2.20 6.53 -2.39 -0.02 2.19 16 34 H 0.07 2.47 6.30 -2.39 -0.02 2.45 16 35 H 0.03 1.02 6.28 -2.39 -0.02 1.00 16 36 H 0.08 2.38 8.00 -2.39 -0.02 2.36 16 37 H 0.04 1.31 6.94 -2.39 -0.02 1.29 16 38 H 0.08 2.26 6.47 -2.39 -0.02 2.24 16 39 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 41 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 43 H 0.19 -1.43 8.06 -2.91 -0.02 -1.45 16 44 H 0.19 -1.46 8.06 -2.91 -0.02 -1.48 16 45 H 0.16 0.58 8.06 -2.91 -0.02 0.55 16 Total: -1.00 -80.66 368.54 2.63 -78.03 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 0.94 Total: 5.75 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 5.53 Total: 1.98 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -5.34 Total: -100.05 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -0.18 Total: -32.75 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.67 Total: 47.04 kcal Total: -80.66 2.63 -78.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828041106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.261 kcal (2) G-P(sol) polarization free energy of solvation -80.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds