Wall clock time and date at job start Tue Mar 31 2020 18:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46882 * 2 1 4 4 C 1.50697 * 109.47355 * 119.99826 * 2 1 3 5 5 H 1.08005 * 120.00035 * 119.99842 * 4 2 1 6 6 C 1.37879 * 120.00062 * 300.00316 * 4 2 1 7 7 N 1.31517 * 119.99753 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 120.00221 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.47201 * 90.00198 * 8 6 4 10 10 H 1.48501 * 109.47370 * 210.00294 * 8 6 4 11 11 H 1.48503 * 109.46983 * 330.00619 * 8 6 4 12 12 N 1.46893 * 109.46852 * 240.00196 * 2 1 3 13 13 C 1.46907 * 110.99975 * 183.95104 * 12 2 1 14 14 C 1.46896 * 111.00370 * 59.99933 * 12 2 1 15 15 C 1.52996 * 109.47520 * 190.00146 * 14 12 2 16 16 C 1.53001 * 109.47390 * 179.97438 * 15 14 12 17 17 O 1.42905 * 109.47278 * 179.97438 * 16 15 14 18 18 N 1.41591 * 114.00218 * 180.02562 * 17 16 15 19 19 C 1.34525 * 124.45909 * 269.97949 * 18 17 16 20 20 O 1.21448 * 125.71259 * 0.03487 * 19 18 17 21 21 C 1.47821 * 108.58246 * 180.02562 * 19 18 17 22 22 C 1.38564 * 134.29568 * 180.02562 * 21 19 18 23 23 C 1.38613 * 119.71574 * 180.20994 * 22 21 19 24 24 C 1.38220 * 120.45711 * 359.50655 * 23 22 21 25 25 C 1.38614 * 120.46568 * 0.47968 * 24 23 22 26 26 C 1.38568 * 119.71701 * 359.76831 * 25 24 23 27 27 C 1.34525 * 124.46432 * 89.99784 * 18 17 16 28 28 O 1.21446 * 125.70834 * 0.02562 * 27 18 17 29 29 H 1.09007 * 109.47037 * 300.00039 * 1 2 3 30 30 H 1.08993 * 109.47301 * 59.99892 * 1 2 3 31 31 H 1.08993 * 109.47198 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99887 * 179.97438 * 7 6 4 33 33 H 1.08993 * 109.47090 * 296.04542 * 13 12 2 34 34 H 1.08997 * 109.46759 * 56.04839 * 13 12 2 35 35 H 1.09000 * 109.47130 * 176.04629 * 13 12 2 36 36 H 1.09005 * 109.47561 * 70.00098 * 14 12 2 37 37 H 1.09007 * 109.46934 * 310.00139 * 14 12 2 38 38 H 1.08999 * 109.47593 * 59.99398 * 15 14 12 39 39 H 1.09007 * 109.47011 * 299.99945 * 15 14 12 40 40 H 1.09002 * 109.47077 * 59.99975 * 16 15 14 41 41 H 1.08994 * 109.47234 * 299.99778 * 16 15 14 42 42 H 1.08002 * 120.13758 * 359.92268 * 22 21 19 43 43 H 1.07998 * 119.76663 * 179.72326 * 23 22 21 44 44 H 1.08001 * 119.76807 * 180.24655 * 24 23 22 45 45 H 1.07994 * 120.14144 * 179.74580 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6534 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1382 -0.8590 3.5565 8 14 0.6259 1.2798 2.6542 9 1 -0.8020 0.8744 2.6995 10 1 0.9772 1.9954 3.9071 11 1 0.8490 2.1773 1.4923 12 7 2.0196 -0.6924 -1.1994 13 6 3.4851 -0.7944 -1.1871 14 6 1.5486 -0.0264 -2.4210 15 6 1.8625 -0.9042 -3.6341 16 6 1.3714 -0.2107 -4.9064 17 8 1.6651 -1.0305 -6.0395 18 7 1.2496 -0.4764 -7.2745 19 6 0.0421 -0.6791 -7.8318 20 8 -0.8508 -1.3554 -7.3625 21 6 -0.0162 0.0593 -9.1111 22 6 -0.9805 0.2188 -10.0933 23 6 -0.7059 0.9993 -11.2054 24 6 0.5186 1.6270 -11.3358 25 6 1.4927 1.4768 -10.3612 26 6 1.2343 0.6955 -9.2464 27 6 2.0103 0.3217 -8.0452 28 8 3.1451 0.6754 -7.7960 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.9042 -0.5274 4.4376 33 1 3.9192 0.2044 -1.2301 34 1 3.8070 -1.2915 -0.2720 35 1 3.8164 -1.3720 -2.0501 36 1 2.0519 0.9346 -2.5281 37 1 0.4721 0.1325 -2.3563 38 1 1.3594 -1.8652 -3.5272 39 1 2.9390 -1.0631 -3.6989 40 1 1.8743 0.7504 -5.0136 41 1 0.2950 -0.0523 -4.8415 42 1 -1.9402 -0.2667 -9.9949 43 1 -1.4553 1.1206 -11.9735 44 1 0.7192 2.2358 -12.2051 45 1 2.4491 1.9663 -10.4704 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828041109.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:02 Heat of formation + Delta-G solvation = 13.640677 kcal Electronic energy + Delta-G solvation = -27543.659037 eV Core-core repulsion = 23530.534197 eV Total energy + Delta-G solvation = -4013.124840 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.56601 -39.17053 -39.06921 -37.94713 -37.18573 -35.66323 -33.38264 -31.95064 -31.80042 -30.76555 -29.80550 -26.67336 -25.67599 -24.68954 -24.31261 -23.60058 -22.73892 -21.13294 -20.83618 -19.45591 -18.55752 -18.33634 -17.31402 -17.16783 -16.81990 -16.03557 -15.70951 -15.66303 -15.25319 -15.07883 -14.96093 -14.66607 -14.44425 -14.20332 -13.99794 -13.37738 -13.22766 -13.09844 -12.97756 -12.66798 -12.47991 -12.31760 -12.01382 -11.61579 -11.50482 -11.08922 -11.05083 -10.92005 -10.70814 -10.54344 -10.48677 -10.33612 -10.16199 -10.06597 -9.89291 -9.88561 -9.50299 -9.03014 -8.57455 -7.40772 -6.07815 -4.06559 -0.54455 0.31446 0.81774 1.44051 2.42108 2.95075 3.03830 3.25525 3.34840 3.37353 3.52984 3.78241 3.93279 4.23051 4.38412 4.41007 4.54309 4.66152 4.72140 4.82363 4.97136 5.11422 5.20998 5.23903 5.25124 5.37160 5.43847 5.53019 5.55695 5.81651 5.89951 5.92040 6.03172 6.05945 6.20189 6.25297 6.36958 6.39680 6.47011 6.57572 6.70004 6.78235 6.91637 7.25736 7.30772 7.56749 7.90858 8.05035 8.63486 8.98470 9.53714 11.04785 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025143 B = 0.002062 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.361654 B =13573.818478 C =13875.174501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.182 3.818 3 H -0.002 1.002 4 C -0.506 4.506 5 H 0.084 0.916 6 C 0.069 3.931 7 N -0.898 5.898 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.270 1.270 12 N -0.525 5.525 13 C 0.032 3.968 14 C 0.054 3.946 15 C -0.105 4.105 16 C 0.023 3.977 17 O -0.102 6.102 18 N -0.448 5.448 19 C 0.572 3.428 20 O -0.443 6.443 21 C -0.131 4.131 22 C -0.041 4.041 23 C -0.093 4.093 24 C -0.094 4.094 25 C -0.041 4.041 26 C -0.131 4.131 27 C 0.573 3.427 28 O -0.445 6.445 29 H 0.042 0.958 30 H 0.029 0.971 31 H 0.062 0.938 32 H 0.264 0.736 33 H 0.012 0.988 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.026 0.974 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.376 6.571 -34.150 35.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.074 3.926 3 H 0.015 0.985 4 C -0.544 4.544 5 H 0.102 0.898 6 C -0.132 4.132 7 N -0.536 5.536 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.195 1.195 12 N -0.250 5.250 13 C -0.116 4.116 14 C -0.075 4.075 15 C -0.145 4.145 16 C -0.055 4.055 17 O -0.103 6.103 18 N -0.234 5.234 19 C 0.362 3.638 20 O -0.312 6.312 21 C -0.135 4.135 22 C -0.060 4.060 23 C -0.111 4.111 24 C -0.112 4.112 25 C -0.060 4.060 26 C -0.135 4.135 27 C 0.362 3.638 28 O -0.314 6.314 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.031 0.969 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.044 0.956 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.164 0.836 43 H 0.163 0.837 44 H 0.163 0.837 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.301 5.685 -33.428 34.319 hybrid contribution -0.312 1.721 0.589 1.845 sum -5.613 7.405 -32.838 34.128 Atomic orbital electron populations 1.22232 0.98554 1.01472 0.98198 1.19695 0.91461 0.92642 0.88753 0.98478 1.20979 1.31976 1.13622 0.87839 0.89792 1.24933 0.95850 0.96637 0.95824 1.69880 1.45648 1.40246 0.97866 0.86874 0.80795 0.83799 0.76801 1.20499 1.22464 1.19522 1.61894 1.10210 1.51892 1.00991 1.22332 0.87738 0.99102 1.02428 1.22013 1.01106 0.94343 0.90076 1.21521 1.02740 1.00631 0.89578 1.23413 1.01340 0.95678 0.85024 1.90854 1.79306 1.36757 1.03397 1.48226 1.15752 1.47102 1.12356 1.18579 0.80571 0.80246 0.84450 1.90854 1.38824 1.35198 1.66326 1.20372 0.96408 1.00831 0.95864 1.20850 0.98452 0.95755 0.90937 1.21511 0.97421 0.95131 0.97083 1.21510 0.92777 0.98270 0.98618 1.20845 1.00234 0.94535 0.90386 1.20368 0.94887 1.01951 0.96317 1.18576 0.85426 0.76810 0.82977 1.90847 1.15483 1.51267 1.73816 0.93983 0.95247 0.91894 0.92599 0.96928 0.89603 0.93224 0.95622 0.90496 0.89539 0.90436 0.91633 0.91369 0.83623 0.83725 0.83734 0.83653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 8.47 37.16 0.31 -2.95 16 2 C 0.18 4.36 1.65 -68.87 -0.11 4.25 16 3 H 0.00 -0.06 7.20 -51.93 -0.37 -0.43 16 4 C -0.51 -14.21 8.46 -34.44 -0.29 -14.50 16 5 H 0.08 2.55 6.65 -52.48 -0.35 2.20 16 6 C 0.07 2.00 5.45 -17.82 -0.10 1.91 16 7 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 8 Si 0.89 22.10 24.37 -169.99 -4.14 17.96 16 9 H -0.28 -6.75 6.87 56.52 0.39 -6.36 16 10 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 11 H -0.27 -6.49 6.53 56.52 0.37 -6.12 16 12 N -0.53 -11.01 4.62 -236.29 -1.09 -12.10 16 13 C 0.03 0.63 9.04 60.07 0.54 1.18 16 14 C 0.05 0.91 4.77 -3.83 -0.02 0.89 16 15 C -0.11 -1.55 5.51 -26.73 -0.15 -1.70 16 16 C 0.02 0.31 6.40 37.16 0.24 0.55 16 17 O -0.10 -1.49 11.36 -27.90 -0.32 -1.80 16 18 N -0.45 -5.76 3.16 -13.25 -0.04 -5.80 16 19 C 0.57 6.75 8.24 -12.45 -0.10 6.64 16 20 O -0.44 -6.36 18.02 -0.77 -0.01 -6.38 16 21 C -0.13 -1.07 6.40 -104.83 -0.67 -1.74 16 22 C -0.04 -0.20 10.09 -39.32 -0.40 -0.60 16 23 C -0.09 -0.24 10.04 -39.45 -0.40 -0.64 16 24 C -0.09 -0.24 10.03 -39.45 -0.40 -0.64 16 25 C -0.04 -0.20 10.09 -39.32 -0.40 -0.60 16 26 C -0.13 -1.07 6.41 -104.83 -0.67 -1.74 16 27 C 0.57 6.73 8.24 -12.46 -0.10 6.62 16 28 O -0.45 -6.34 18.02 -0.76 -0.01 -6.36 16 29 H 0.04 0.97 3.27 -51.92 -0.17 0.80 16 30 H 0.03 0.56 6.20 -51.93 -0.32 0.23 16 31 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.09 1.88 6.10 -51.93 -0.32 1.56 16 35 H 0.05 0.84 6.47 -51.93 -0.34 0.50 16 36 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 37 H 0.08 1.28 5.83 -51.92 -0.30 0.98 16 38 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.08 1.14 6.55 -51.92 -0.34 0.80 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 43 H 0.14 -0.04 8.06 -52.49 -0.42 -0.46 16 44 H 0.14 -0.04 8.06 -52.49 -0.42 -0.47 16 45 H 0.15 0.50 8.06 -52.49 -0.42 0.07 16 LS Contribution 370.96 15.07 5.59 5.59 Total: -1.00 -34.54 370.96 -7.88 -42.42 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -5.92 Total: -3.79 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.71 Total: -3.06 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -0.36 Total: -44.57 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.34 Total: -14.54 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.14 Total: 17.96 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.54 -7.88 -42.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828041109.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.058 kcal (2) G-P(sol) polarization free energy of solvation -34.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds