Wall clock time and date at job start Tue Mar 31 2020 18:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46882 * 2 1 4 4 C 1.50697 * 109.47355 * 119.99826 * 2 1 3 5 5 H 1.08005 * 120.00035 * 119.99842 * 4 2 1 6 6 C 1.37879 * 120.00062 * 300.00316 * 4 2 1 7 7 N 1.31517 * 119.99753 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 120.00221 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.47201 * 90.00198 * 8 6 4 10 10 H 1.48501 * 109.47370 * 210.00294 * 8 6 4 11 11 H 1.48503 * 109.46983 * 330.00619 * 8 6 4 12 12 N 1.46893 * 109.46852 * 240.00196 * 2 1 3 13 13 C 1.46907 * 110.99975 * 183.95104 * 12 2 1 14 14 C 1.46896 * 111.00370 * 59.99933 * 12 2 1 15 15 C 1.52996 * 109.47520 * 190.00146 * 14 12 2 16 16 C 1.53001 * 109.47390 * 179.97438 * 15 14 12 17 17 O 1.42905 * 109.47278 * 179.97438 * 16 15 14 18 18 N 1.41591 * 114.00218 * 180.02562 * 17 16 15 19 19 C 1.34525 * 124.45909 * 269.97949 * 18 17 16 20 20 O 1.21448 * 125.71259 * 0.03487 * 19 18 17 21 21 C 1.47821 * 108.58246 * 180.02562 * 19 18 17 22 22 C 1.38564 * 134.29568 * 180.02562 * 21 19 18 23 23 C 1.38613 * 119.71574 * 180.20994 * 22 21 19 24 24 C 1.38220 * 120.45711 * 359.50655 * 23 22 21 25 25 C 1.38614 * 120.46568 * 0.47968 * 24 23 22 26 26 C 1.38568 * 119.71701 * 359.76831 * 25 24 23 27 27 C 1.34525 * 124.46432 * 89.99784 * 18 17 16 28 28 O 1.21446 * 125.70834 * 0.02562 * 27 18 17 29 29 H 1.09007 * 109.47037 * 300.00039 * 1 2 3 30 30 H 1.08993 * 109.47301 * 59.99892 * 1 2 3 31 31 H 1.08993 * 109.47198 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99887 * 179.97438 * 7 6 4 33 33 H 1.08993 * 109.47090 * 296.04542 * 13 12 2 34 34 H 1.08997 * 109.46759 * 56.04839 * 13 12 2 35 35 H 1.09000 * 109.47130 * 176.04629 * 13 12 2 36 36 H 1.09005 * 109.47561 * 70.00098 * 14 12 2 37 37 H 1.09007 * 109.46934 * 310.00139 * 14 12 2 38 38 H 1.08999 * 109.47593 * 59.99398 * 15 14 12 39 39 H 1.09007 * 109.47011 * 299.99945 * 15 14 12 40 40 H 1.09002 * 109.47077 * 59.99975 * 16 15 14 41 41 H 1.08994 * 109.47234 * 299.99778 * 16 15 14 42 42 H 1.08002 * 120.13758 * 359.92268 * 22 21 19 43 43 H 1.07998 * 119.76663 * 179.72326 * 23 22 21 44 44 H 1.08001 * 119.76807 * 180.24655 * 24 23 22 45 45 H 1.07994 * 120.14144 * 179.74580 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6534 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1382 -0.8590 3.5565 8 14 0.6259 1.2798 2.6542 9 1 -0.8020 0.8744 2.6995 10 1 0.9772 1.9954 3.9071 11 1 0.8490 2.1773 1.4923 12 7 2.0196 -0.6924 -1.1994 13 6 3.4851 -0.7944 -1.1871 14 6 1.5486 -0.0264 -2.4210 15 6 1.8625 -0.9042 -3.6341 16 6 1.3714 -0.2107 -4.9064 17 8 1.6651 -1.0305 -6.0395 18 7 1.2496 -0.4764 -7.2745 19 6 0.0421 -0.6791 -7.8318 20 8 -0.8508 -1.3554 -7.3625 21 6 -0.0162 0.0593 -9.1111 22 6 -0.9805 0.2188 -10.0933 23 6 -0.7059 0.9993 -11.2054 24 6 0.5186 1.6270 -11.3358 25 6 1.4927 1.4768 -10.3612 26 6 1.2343 0.6955 -9.2464 27 6 2.0103 0.3217 -8.0452 28 8 3.1451 0.6754 -7.7960 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.9042 -0.5274 4.4376 33 1 3.9192 0.2044 -1.2301 34 1 3.8070 -1.2915 -0.2720 35 1 3.8164 -1.3720 -2.0501 36 1 2.0519 0.9346 -2.5281 37 1 0.4721 0.1325 -2.3563 38 1 1.3594 -1.8652 -3.5272 39 1 2.9390 -1.0631 -3.6989 40 1 1.8743 0.7504 -5.0136 41 1 0.2950 -0.0523 -4.8415 42 1 -1.9402 -0.2667 -9.9949 43 1 -1.4553 1.1206 -11.9735 44 1 0.7192 2.2358 -12.2051 45 1 2.4491 1.9663 -10.4704 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828041109.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:00 Heat of formation + Delta-G solvation = -10.322098 kcal Electronic energy + Delta-G solvation = -27544.698141 eV Core-core repulsion = 23530.534197 eV Total energy + Delta-G solvation = -4014.163944 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.33584 -40.01030 -39.82688 -39.29732 -38.41017 -36.56395 -35.13868 -33.52776 -32.17879 -31.89720 -31.15857 -28.26360 -26.41766 -26.41120 -25.54101 -24.55471 -23.34421 -22.58102 -21.55627 -21.14021 -19.53122 -18.97975 -18.89252 -18.16571 -17.87862 -17.31016 -16.90394 -16.57127 -16.48376 -16.03024 -15.82917 -15.52270 -15.42155 -15.41046 -15.08821 -14.95471 -14.72294 -14.50426 -13.98018 -13.78996 -13.64616 -13.29851 -13.25352 -12.89354 -12.73077 -12.68534 -12.50931 -12.38235 -12.12373 -12.07870 -11.80389 -11.64656 -11.48868 -11.43199 -11.23578 -11.02775 -10.75337 -10.28078 -10.26454 -9.09136 -8.30189 -6.33696 -1.16509 -0.12916 -0.02752 0.84330 1.28135 1.32768 1.42965 1.57591 2.29467 2.44510 2.56718 2.57688 3.00014 3.02921 3.20802 3.49925 3.69039 3.81775 4.01393 4.04007 4.10943 4.15789 4.19260 4.25209 4.39326 4.41523 4.46654 4.54738 4.60995 4.72765 4.79460 4.82516 4.82675 4.83071 4.93760 5.02222 5.14247 5.20582 5.21423 5.24060 5.27900 5.40153 5.60908 5.67215 5.86608 5.97742 6.29638 6.39193 6.64100 6.72835 7.30662 8.85936 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025143 B = 0.002062 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.361654 B =13573.818478 C =13875.174501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.184 3.816 3 H -0.008 1.008 4 C -0.509 4.509 5 H 0.044 0.956 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.950 3.050 9 H -0.264 1.264 10 H -0.298 1.298 11 H -0.252 1.252 12 N -0.540 5.540 13 C 0.037 3.963 14 C 0.056 3.944 15 C -0.095 4.095 16 C 0.033 3.967 17 O -0.129 6.129 18 N -0.456 5.456 19 C 0.569 3.431 20 O -0.482 6.482 21 C -0.150 4.150 22 C -0.037 4.037 23 C -0.075 4.075 24 C -0.076 4.076 25 C -0.036 4.036 26 C -0.150 4.150 27 C 0.570 3.430 28 O -0.483 6.483 29 H 0.036 0.964 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.266 0.734 33 H 0.017 0.983 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.035 0.965 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.159 0.841 43 H 0.186 0.814 44 H 0.186 0.814 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.476 9.249 -38.651 40.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.076 3.924 3 H 0.009 0.991 4 C -0.547 4.547 5 H 0.062 0.938 6 C -0.187 4.187 7 N -0.587 5.587 8 Si 0.777 3.223 9 H -0.190 1.190 10 H -0.225 1.225 11 H -0.176 1.176 12 N -0.264 5.264 13 C -0.111 4.111 14 C -0.072 4.072 15 C -0.134 4.134 16 C -0.045 4.045 17 O -0.131 6.131 18 N -0.243 5.243 19 C 0.362 3.638 20 O -0.354 6.354 21 C -0.154 4.154 22 C -0.055 4.055 23 C -0.093 4.093 24 C -0.093 4.093 25 C -0.055 4.055 26 C -0.154 4.154 27 C 0.362 3.638 28 O -0.355 6.355 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.177 0.823 43 H 0.203 0.797 44 H 0.203 0.797 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.405 8.364 -37.973 39.582 hybrid contribution 0.385 0.845 1.773 2.002 sum -7.019 9.210 -36.200 38.007 Atomic orbital electron populations 1.22140 0.96731 1.01592 0.99660 1.19540 0.92839 0.91695 0.88358 0.99090 1.21225 1.31018 1.12470 0.89975 0.93819 1.25799 0.97460 1.00042 0.95386 1.70034 1.47672 1.42456 0.98529 0.85842 0.79359 0.79943 0.77174 1.18984 1.22546 1.17624 1.61815 1.10712 1.52395 1.01514 1.22258 0.87454 0.99400 1.02008 1.22041 1.01519 0.94767 0.88869 1.21330 1.02625 0.99954 0.89502 1.23249 1.01538 0.95374 0.84311 1.90770 1.79788 1.37889 1.04616 1.48595 1.16662 1.47456 1.11573 1.19280 0.79550 0.79612 0.85407 1.90816 1.39777 1.37166 1.67617 1.20199 0.97820 1.02092 0.95252 1.21225 0.98158 0.95558 0.90566 1.22028 0.98178 0.92716 0.96381 1.22028 0.91634 0.97144 0.98520 1.21222 1.01617 0.93203 0.89451 1.20197 0.94221 1.04597 0.96379 1.19272 0.85072 0.75749 0.83702 1.90809 1.16990 1.52807 1.74878 0.94548 0.91626 0.92553 0.92502 0.96484 0.92818 0.90516 0.94701 0.89633 0.90248 0.90515 0.91147 0.90902 0.82303 0.79666 0.79665 0.82301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.14 8.47 71.98 0.61 -5.53 16 2 C 0.18 8.76 1.65 44.17 0.07 8.84 16 3 H -0.01 -0.41 7.20 -2.39 -0.02 -0.42 16 4 C -0.51 -29.45 8.46 25.60 0.22 -29.24 16 5 H 0.04 2.82 6.65 -2.91 -0.02 2.80 16 6 C 0.01 0.61 5.45 84.65 0.46 1.07 16 7 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 8 Si 0.95 45.46 24.37 68.60 1.67 47.13 16 9 H -0.26 -11.97 6.87 99.48 0.68 -11.29 16 10 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 11 H -0.25 -11.25 6.53 99.48 0.65 -10.60 16 12 N -0.54 -22.57 4.62 -901.48 -4.17 -26.74 16 13 C 0.04 1.48 9.04 127.69 1.15 2.63 16 14 C 0.06 1.85 4.77 86.30 0.41 2.26 16 15 C -0.09 -2.77 5.51 30.59 0.17 -2.60 16 16 C 0.03 0.89 6.40 71.98 0.46 1.35 16 17 O -0.13 -3.90 11.36 -23.05 -0.26 -4.17 16 18 N -0.46 -12.20 3.16 -432.75 -1.37 -13.56 16 19 C 0.57 13.80 8.24 86.82 0.72 14.52 16 20 O -0.48 -14.36 18.02 2.35 0.04 -14.32 16 21 C -0.15 -2.28 6.40 -20.00 -0.13 -2.41 16 22 C -0.04 -0.24 10.09 22.44 0.23 -0.02 16 23 C -0.08 0.02 10.04 22.35 0.22 0.25 16 24 C -0.08 0.03 10.03 22.36 0.22 0.25 16 25 C -0.04 -0.24 10.09 22.44 0.23 -0.01 16 26 C -0.15 -2.28 6.41 -20.00 -0.13 -2.40 16 27 C 0.57 13.75 8.24 86.82 0.72 14.46 16 28 O -0.48 -14.26 18.02 2.36 0.04 -14.22 16 29 H 0.04 1.58 3.27 -2.38 -0.01 1.58 16 30 H 0.07 2.30 6.20 -2.39 -0.01 2.29 16 31 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 33 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.05 2.48 6.10 -2.39 -0.01 2.46 16 35 H 0.08 2.61 6.47 -2.39 -0.02 2.60 16 36 H 0.03 1.10 8.12 -2.38 -0.02 1.08 16 37 H 0.09 2.66 5.83 -2.38 -0.01 2.64 16 38 H 0.08 2.43 8.14 -2.39 -0.02 2.42 16 39 H 0.08 2.24 6.55 -2.38 -0.02 2.22 16 40 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.16 0.62 8.06 -2.91 -0.02 0.59 16 43 H 0.19 -1.44 8.06 -2.91 -0.02 -1.46 16 44 H 0.19 -1.45 8.06 -2.91 -0.02 -1.47 16 45 H 0.16 0.60 8.06 -2.91 -0.02 0.57 16 Total: -1.00 -80.63 370.96 2.83 -77.80 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: 0.94 Total: 4.20 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 5.63 Total: 3.42 kcal Atomic # 7 Polarization: -94.61 SS G_CDS: -5.23 Total: -99.84 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.18 Total: -32.71 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.67 Total: 47.13 kcal Total: -80.63 2.83 -77.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828041109.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.473 kcal (2) G-P(sol) polarization free energy of solvation -80.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds