Wall clock time and date at job start Tue Mar 31 2020 17:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29821 * 120.00305 * 2 1 4 4 N 1.40100 * 120.00348 * 0.02562 * 3 2 1 5 5 C 1.34767 * 120.00387 * 179.97438 * 4 3 2 6 6 O 1.21312 * 119.99985 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00223 * 180.02562 * 5 4 3 8 8 H 1.08999 * 110.45297 * 300.70058 * 7 5 4 9 9 C 1.54500 * 110.51109 * 63.30575 * 7 5 4 10 10 C 1.54485 * 104.06219 * 118.64664 * 9 7 5 11 11 O 1.44423 * 104.80314 * 23.98066 * 10 9 7 12 12 C 1.44643 * 105.36785 * 319.56571 * 11 10 9 13 13 H 1.09003 * 110.34039 * 281.59594 * 12 11 10 14 14 C 1.52994 * 110.50953 * 159.19027 * 12 11 10 15 15 C 1.47357 * 119.99299 * 179.72752 * 2 1 3 16 16 C 1.39809 * 120.09100 * 359.72345 * 15 2 1 17 17 C 1.37716 * 119.91048 * 179.76587 * 16 15 2 18 18 C 1.39081 * 120.08834 * 0.50768 * 17 16 15 19 19 O 1.35659 * 119.90978 * 179.76401 * 18 17 16 20 20 C 1.34803 * 116.99447 * 174.42850 * 19 18 17 21 21 H 1.07995 * 120.00539 * 5.05615 * 20 19 18 22 22 C 1.38643 * 119.99717 * 185.05691 * 20 19 18 23 23 N 1.31559 * 120.00076 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00249 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.47126 * 89.99788 * 24 22 20 26 26 H 1.48496 * 109.47689 * 210.00216 * 24 22 20 27 27 H 1.48513 * 109.46834 * 329.99995 * 24 22 20 28 28 C 1.39077 * 120.17430 * 359.74594 * 18 17 16 29 29 C 1.37708 * 120.08764 * 359.97438 * 28 18 17 30 30 H 1.08997 * 109.47099 * 89.99310 * 1 2 3 31 31 H 1.08999 * 109.47455 * 209.99937 * 1 2 3 32 32 H 1.09005 * 109.46258 * 329.99844 * 1 2 3 33 33 H 0.96999 * 119.99550 * 359.97438 * 4 3 2 34 34 H 1.09001 * 110.51311 * 237.28768 * 9 7 5 35 35 H 1.09001 * 110.51133 * 0.02562 * 9 7 5 36 36 H 1.09004 * 110.37401 * 142.81320 * 10 9 7 37 37 H 1.08995 * 110.37132 * 265.14392 * 10 9 7 38 38 H 1.09005 * 109.46848 * 304.66357 * 14 12 11 39 39 H 1.08996 * 109.47601 * 64.66497 * 14 12 11 40 40 H 1.08998 * 109.47558 * 184.67328 * 14 12 11 41 41 H 1.07997 * 120.04422 * 0.02562 * 16 15 2 42 42 H 1.08007 * 119.95444 * 180.24931 * 17 16 15 43 43 H 0.97004 * 120.00040 * 179.97438 * 23 22 20 44 44 H 1.08004 * 119.95493 * 180.02562 * 28 18 17 45 45 H 1.08007 * 120.04590 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1562 1.1242 0.0000 4 7 1.4558 2.3376 0.0005 5 6 2.1297 3.5047 0.0011 6 8 3.3428 3.5047 0.0006 7 6 1.3763 4.8099 0.0022 8 1 0.7340 4.8797 -0.8756 9 6 0.5432 4.9529 1.2955 10 6 1.1201 6.2141 1.9761 11 8 1.7105 6.9763 0.9008 12 6 2.3581 6.0016 0.0506 13 1 3.3089 5.6925 0.4848 14 6 2.5725 6.5725 -1.3525 15 6 2.2437 -1.2762 0.0061 16 6 1.5464 -2.4880 0.0177 17 6 2.2386 -3.6786 0.0184 18 6 3.6294 -3.6765 0.0183 19 8 4.3075 -4.8514 0.0239 20 6 5.6488 -4.7843 -0.0931 21 1 6.1426 -3.8239 -0.1034 22 6 6.3944 -5.9483 -0.2001 23 7 7.7034 -5.8829 -0.3138 24 14 5.5404 -7.6096 -0.1815 25 1 5.1895 -8.0013 -1.5702 26 1 6.4492 -8.6269 0.4052 27 1 4.3033 -7.5211 0.6355 28 6 4.3267 -2.4732 0.0122 29 6 3.6418 -1.2785 0.0056 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3632 0.8901 0.5139 33 1 0.4859 2.3377 0.0005 34 1 -0.5107 5.0959 1.0570 35 1 0.6766 4.0798 1.9342 36 1 0.3240 6.7854 2.4536 37 1 1.8800 5.9370 2.7067 38 1 1.6189 6.9140 -1.7554 39 1 3.2666 7.4114 -1.3014 40 1 2.9845 5.7990 -2.0005 41 1 0.4665 -2.4904 0.0218 42 1 1.7006 -4.6151 0.0233 43 1 8.2251 -6.6973 -0.3884 44 1 5.4067 -2.4758 0.0117 45 1 4.1840 -0.3444 0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842559484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:56 Heat of formation + Delta-G solvation = -42.038016 kcal Electronic energy + Delta-G solvation = -27189.504840 eV Core-core repulsion = 23173.965590 eV Total energy + Delta-G solvation = -4015.539250 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.73817 -39.41089 -38.76195 -37.58714 -36.11328 -33.41434 -32.63961 -32.33194 -31.77306 -30.60454 -28.97285 -28.33491 -26.75197 -25.46384 -23.13146 -22.57341 -22.09287 -21.70435 -20.34028 -19.68296 -18.02615 -17.96041 -17.30816 -16.53911 -16.33904 -15.99803 -15.73653 -15.09247 -15.01059 -14.54908 -14.27592 -14.14246 -14.02900 -13.96194 -13.89564 -13.73905 -12.92850 -12.84630 -12.67066 -12.61685 -12.41404 -12.29096 -12.14917 -11.89089 -11.72223 -11.51926 -11.35436 -11.31793 -11.21897 -10.90185 -10.84436 -10.30740 -10.23979 -10.06331 -9.88254 -9.46555 -9.20778 -8.79415 -8.40369 -7.27701 -6.54522 -4.19454 1.22898 2.07717 2.33478 2.40344 2.91886 3.15522 3.18860 3.31829 3.42904 4.02892 4.12841 4.18206 4.25963 4.43437 4.50471 4.55093 4.69558 4.77229 4.79553 4.84080 4.95755 4.99273 5.03941 5.13681 5.22902 5.25598 5.31203 5.41536 5.48745 5.49739 5.61060 5.69622 5.73291 5.84663 5.93985 6.06174 6.20828 6.40233 6.42414 6.70444 6.89997 7.00185 7.04728 7.20621 7.45472 7.53951 7.68951 7.89552 8.37835 8.78862 9.38489 10.51936 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024089 B = 0.002014 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.057324 B =13900.672547 C =14682.256698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.171 3.829 3 N -0.263 5.263 4 N -0.584 5.584 5 C 0.536 3.464 6 O -0.502 6.502 7 C -0.138 4.138 8 H 0.113 0.887 9 C -0.149 4.149 10 C 0.047 3.953 11 O -0.370 6.370 12 C 0.086 3.914 13 H 0.092 0.908 14 C -0.145 4.145 15 C -0.157 4.157 16 C -0.044 4.044 17 C -0.198 4.198 18 C 0.175 3.825 19 O -0.205 6.205 20 C -0.391 4.391 21 H 0.111 0.889 22 C 0.065 3.935 23 N -0.869 5.869 24 Si 0.907 3.093 25 H -0.272 1.272 26 H -0.281 1.281 27 H -0.258 1.258 28 C -0.230 4.230 29 C -0.022 4.022 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.379 0.621 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.282 0.718 44 H 0.137 0.863 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.865 18.657 1.231 26.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.016 4.016 3 N -0.070 5.070 4 N -0.326 5.326 5 C 0.322 3.678 6 O -0.374 6.374 7 C -0.161 4.161 8 H 0.131 0.869 9 C -0.187 4.187 10 C -0.030 4.030 11 O -0.289 6.289 12 C 0.028 3.972 13 H 0.110 0.890 14 C -0.202 4.202 15 C -0.161 4.161 16 C -0.065 4.065 17 C -0.217 4.217 18 C 0.120 3.880 19 O -0.108 6.108 20 C -0.466 4.466 21 H 0.128 0.872 22 C -0.140 4.140 23 N -0.505 5.505 24 Si 0.732 3.268 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.182 1.182 28 C -0.249 4.249 29 C -0.042 4.042 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.218 0.782 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.093 0.907 44 H 0.155 0.845 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.981 19.118 1.197 25.599 hybrid contribution -1.502 -1.206 0.017 1.927 sum -18.484 17.912 1.213 25.767 Atomic orbital electron populations 1.21346 0.93020 1.03720 1.03557 1.23336 0.93012 0.91829 0.93410 1.75310 1.22627 0.90418 1.18668 1.46903 1.08222 1.03683 1.73831 1.20122 0.88159 0.83311 0.76236 1.90738 1.13574 1.86702 1.46402 1.22789 0.98773 0.93262 1.01276 0.86887 1.23004 1.00439 1.00007 0.95272 1.23380 0.97562 0.91580 0.90510 1.89176 1.72177 1.30137 1.37422 1.22976 0.95546 0.85759 0.92889 0.89002 1.21795 1.02629 1.01953 0.93857 1.17691 0.92776 0.88873 1.16769 1.20699 0.98420 0.90639 0.96722 1.20084 0.91217 0.98122 1.12319 1.19333 0.91272 0.85710 0.91721 1.83527 1.22033 1.27045 1.78164 1.20863 0.77088 0.97189 1.51432 0.87184 1.24529 0.94850 0.99332 0.95285 1.69647 1.04557 1.30419 1.45874 0.86158 0.79933 0.81392 0.79315 1.19703 1.20603 1.18229 1.21253 1.01421 0.91502 1.10753 1.21058 0.92742 0.97661 0.92788 0.89735 0.89183 0.91909 0.78192 0.89378 0.89962 0.88571 0.91836 0.91841 0.91334 0.90714 0.86184 0.85986 0.90747 0.84505 0.85832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.04 36.01 0.33 -1.04 16 2 C 0.17 2.35 7.10 -79.73 -0.57 1.78 16 3 N -0.26 -4.08 10.15 35.10 0.36 -3.72 16 4 N -0.58 -6.96 6.07 31.22 0.19 -6.77 16 5 C 0.54 6.77 7.07 -10.99 -0.08 6.70 16 6 O -0.50 -8.67 15.80 5.53 0.09 -8.58 16 7 C -0.14 -1.18 3.05 -90.21 -0.27 -1.45 16 8 H 0.11 0.73 7.87 -51.93 -0.41 0.32 16 9 C -0.15 -0.96 6.70 -25.16 -0.17 -1.13 16 10 C 0.05 0.34 7.64 37.94 0.29 0.63 16 11 O -0.37 -3.70 11.35 -35.23 -0.40 -4.10 16 12 C 0.09 0.85 3.27 -25.96 -0.08 0.77 16 13 H 0.09 1.10 6.93 -51.93 -0.36 0.74 16 14 C -0.15 -1.22 9.52 37.15 0.35 -0.87 16 15 C -0.16 -2.57 5.87 -105.01 -0.62 -3.18 16 16 C -0.04 -0.67 9.35 -39.19 -0.37 -1.04 16 17 C -0.20 -3.56 9.97 -39.46 -0.39 -3.96 16 18 C 0.17 3.82 6.65 -38.96 -0.26 3.56 16 19 O -0.21 -5.15 8.58 0.41 0.00 -5.15 16 20 C -0.39 -10.62 9.94 30.88 0.31 -10.32 16 21 H 0.11 3.08 5.42 -52.49 -0.28 2.79 16 22 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 23 N -0.87 -24.40 13.96 55.48 0.77 -23.63 16 24 Si 0.91 20.78 28.62 -169.99 -4.86 15.92 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.26 -5.89 7.11 56.52 0.40 -5.49 16 28 C -0.23 -4.88 9.15 -39.46 -0.36 -5.24 16 29 C -0.02 -0.42 9.57 -39.18 -0.37 -0.80 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.69 6.44 -51.93 -0.33 0.36 16 32 H 0.06 0.43 6.35 -51.93 -0.33 0.10 16 33 H 0.38 3.09 6.44 -182.60 -1.18 1.91 16 34 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.55 7.72 -51.93 -0.40 0.15 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.12 1.33 6.34 -52.49 -0.33 1.00 16 42 H 0.12 1.99 8.06 -52.48 -0.42 1.56 16 43 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.14 3.08 5.62 -52.48 -0.29 2.78 16 45 H 0.12 2.34 7.55 -52.48 -0.40 1.94 16 LS Contribution 375.27 15.07 5.66 5.66 Total: -1.00 -32.62 375.27 -7.40 -40.02 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.83 Total: 4.28 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -2.36 Total: -13.92 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 1.32 Total: -34.12 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.31 Total: -17.83 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.86 Total: 15.92 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.62 -7.40 -40.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842559484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.020 kcal (2) G-P(sol) polarization free energy of solvation -32.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds