Wall clock time and date at job start Tue Mar 31 2020 17:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29821 * 120.00305 * 2 1 4 4 N 1.40100 * 120.00348 * 0.02562 * 3 2 1 5 5 C 1.34767 * 120.00387 * 179.97438 * 4 3 2 6 6 O 1.21312 * 119.99985 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00223 * 180.02562 * 5 4 3 8 8 H 1.08999 * 110.45297 * 300.70058 * 7 5 4 9 9 C 1.54500 * 110.51109 * 63.30575 * 7 5 4 10 10 C 1.54485 * 104.06219 * 118.64664 * 9 7 5 11 11 O 1.44423 * 104.80314 * 23.98066 * 10 9 7 12 12 C 1.44643 * 105.36785 * 319.56571 * 11 10 9 13 13 H 1.09003 * 110.34039 * 281.59594 * 12 11 10 14 14 C 1.52994 * 110.50953 * 159.19027 * 12 11 10 15 15 C 1.47357 * 119.99299 * 179.72752 * 2 1 3 16 16 C 1.39809 * 120.09100 * 359.72345 * 15 2 1 17 17 C 1.37716 * 119.91048 * 179.76587 * 16 15 2 18 18 C 1.39081 * 120.08834 * 0.50768 * 17 16 15 19 19 O 1.35659 * 119.90978 * 179.76401 * 18 17 16 20 20 C 1.34803 * 116.99447 * 174.42850 * 19 18 17 21 21 H 1.07995 * 120.00539 * 5.05615 * 20 19 18 22 22 C 1.38643 * 119.99717 * 185.05691 * 20 19 18 23 23 N 1.31559 * 120.00076 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00249 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.47126 * 89.99788 * 24 22 20 26 26 H 1.48496 * 109.47689 * 210.00216 * 24 22 20 27 27 H 1.48513 * 109.46834 * 329.99995 * 24 22 20 28 28 C 1.39077 * 120.17430 * 359.74594 * 18 17 16 29 29 C 1.37708 * 120.08764 * 359.97438 * 28 18 17 30 30 H 1.08997 * 109.47099 * 89.99310 * 1 2 3 31 31 H 1.08999 * 109.47455 * 209.99937 * 1 2 3 32 32 H 1.09005 * 109.46258 * 329.99844 * 1 2 3 33 33 H 0.96999 * 119.99550 * 359.97438 * 4 3 2 34 34 H 1.09001 * 110.51311 * 237.28768 * 9 7 5 35 35 H 1.09001 * 110.51133 * 0.02562 * 9 7 5 36 36 H 1.09004 * 110.37401 * 142.81320 * 10 9 7 37 37 H 1.08995 * 110.37132 * 265.14392 * 10 9 7 38 38 H 1.09005 * 109.46848 * 304.66357 * 14 12 11 39 39 H 1.08996 * 109.47601 * 64.66497 * 14 12 11 40 40 H 1.08998 * 109.47558 * 184.67328 * 14 12 11 41 41 H 1.07997 * 120.04422 * 0.02562 * 16 15 2 42 42 H 1.08007 * 119.95444 * 180.24931 * 17 16 15 43 43 H 0.97004 * 120.00040 * 179.97438 * 23 22 20 44 44 H 1.08004 * 119.95493 * 180.02562 * 28 18 17 45 45 H 1.08007 * 120.04590 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1562 1.1242 0.0000 4 7 1.4558 2.3376 0.0005 5 6 2.1297 3.5047 0.0011 6 8 3.3428 3.5047 0.0006 7 6 1.3763 4.8099 0.0022 8 1 0.7340 4.8797 -0.8756 9 6 0.5432 4.9529 1.2955 10 6 1.1201 6.2141 1.9761 11 8 1.7105 6.9763 0.9008 12 6 2.3581 6.0016 0.0506 13 1 3.3089 5.6925 0.4848 14 6 2.5725 6.5725 -1.3525 15 6 2.2437 -1.2762 0.0061 16 6 1.5464 -2.4880 0.0177 17 6 2.2386 -3.6786 0.0184 18 6 3.6294 -3.6765 0.0183 19 8 4.3075 -4.8514 0.0239 20 6 5.6488 -4.7843 -0.0931 21 1 6.1426 -3.8239 -0.1034 22 6 6.3944 -5.9483 -0.2001 23 7 7.7034 -5.8829 -0.3138 24 14 5.5404 -7.6096 -0.1815 25 1 5.1895 -8.0013 -1.5702 26 1 6.4492 -8.6269 0.4052 27 1 4.3033 -7.5211 0.6355 28 6 4.3267 -2.4732 0.0122 29 6 3.6418 -1.2785 0.0056 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3632 0.8901 0.5139 33 1 0.4859 2.3377 0.0005 34 1 -0.5107 5.0959 1.0570 35 1 0.6766 4.0798 1.9342 36 1 0.3240 6.7854 2.4536 37 1 1.8800 5.9370 2.7067 38 1 1.6189 6.9140 -1.7554 39 1 3.2666 7.4114 -1.3014 40 1 2.9845 5.7990 -2.0005 41 1 0.4665 -2.4904 0.0218 42 1 1.7006 -4.6151 0.0233 43 1 8.2251 -6.6973 -0.3884 44 1 5.4067 -2.4758 0.0117 45 1 4.1840 -0.3444 0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842559484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:54 Heat of formation + Delta-G solvation = -64.689477 kcal Electronic energy + Delta-G solvation = -27190.487081 eV Core-core repulsion = 23173.965590 eV Total energy + Delta-G solvation = -4016.521491 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.60269 -40.98042 -39.74308 -38.92230 -37.46522 -34.63416 -34.27165 -33.30143 -32.45698 -32.07274 -30.32529 -29.29784 -27.61720 -27.18664 -24.23162 -23.59224 -23.28051 -22.86109 -21.26702 -20.90684 -19.74885 -19.23526 -18.79568 -17.57418 -17.13080 -16.86586 -16.69673 -16.40985 -15.99846 -15.80118 -15.78013 -15.66557 -15.54534 -15.06669 -14.74371 -14.57850 -14.43171 -14.24131 -14.08672 -13.57933 -13.33938 -13.25974 -13.14578 -12.93165 -12.72495 -12.70116 -12.47068 -12.44869 -12.32267 -12.15984 -11.94984 -11.83793 -11.43909 -11.17994 -10.98087 -10.95885 -10.76152 -10.16766 -9.90076 -8.80594 -8.53085 -6.26544 -0.06833 0.55171 1.15925 1.33013 1.38125 1.44716 1.53626 1.80411 2.27068 2.75100 2.78043 3.00024 3.13923 3.37853 3.47279 3.51143 3.55411 3.89077 3.98025 4.06693 4.12040 4.17471 4.22759 4.29530 4.34225 4.46144 4.54638 4.62545 4.66905 4.70853 4.78105 4.79447 4.87250 4.92800 4.96506 5.01154 5.16788 5.18240 5.20101 5.33771 5.54068 5.60507 5.73225 5.74900 5.83296 6.08826 6.13846 6.51530 6.79580 7.41456 7.49456 8.58144 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024089 B = 0.002014 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.057324 B =13900.672547 C =14682.256698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.169 3.831 3 N -0.307 5.307 4 N -0.569 5.569 5 C 0.533 3.467 6 O -0.559 6.559 7 C -0.126 4.126 8 H 0.146 0.854 9 C -0.140 4.140 10 C 0.037 3.963 11 O -0.383 6.383 12 C 0.081 3.919 13 H 0.059 0.941 14 C -0.143 4.143 15 C -0.136 4.136 16 C -0.023 4.023 17 C -0.189 4.189 18 C 0.141 3.859 19 O -0.231 6.231 20 C -0.404 4.404 21 H 0.078 0.922 22 C 0.009 3.991 23 N -0.921 5.921 24 Si 0.977 3.023 25 H -0.263 1.263 26 H -0.269 1.269 27 H -0.256 1.256 28 C -0.247 4.247 29 C -0.039 4.039 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.403 0.597 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.051 0.949 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.182 0.818 42 H 0.148 0.852 43 H 0.286 0.714 44 H 0.104 0.896 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.273 19.616 1.200 32.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.018 4.018 3 N -0.114 5.114 4 N -0.313 5.313 5 C 0.321 3.679 6 O -0.435 6.435 7 C -0.149 4.149 8 H 0.163 0.837 9 C -0.178 4.178 10 C -0.040 4.040 11 O -0.303 6.303 12 C 0.023 3.977 13 H 0.077 0.923 14 C -0.200 4.200 15 C -0.139 4.139 16 C -0.042 4.042 17 C -0.208 4.208 18 C 0.089 3.911 19 O -0.137 6.137 20 C -0.480 4.480 21 H 0.095 0.905 22 C -0.190 4.190 23 N -0.561 5.561 24 Si 0.798 3.202 25 H -0.188 1.188 26 H -0.194 1.194 27 H -0.179 1.179 28 C -0.266 4.266 29 C -0.059 4.059 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.104 0.896 33 H 0.245 0.755 34 H 0.143 0.857 35 H 0.099 0.901 36 H 0.140 0.860 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.199 0.801 42 H 0.166 0.834 43 H 0.096 0.904 44 H 0.122 0.878 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -23.465 20.119 1.172 30.932 hybrid contribution 0.243 -1.008 0.066 1.039 sum -23.222 19.111 1.238 30.101 Atomic orbital electron populations 1.21502 0.88261 1.06006 1.05640 1.23458 0.95795 0.89910 0.92645 1.75212 1.25542 0.92216 1.18422 1.46721 1.09292 1.02271 1.73026 1.20985 0.87766 0.84576 0.74585 1.90727 1.16309 1.87530 1.48924 1.22811 0.98410 0.89740 1.03954 0.83682 1.23056 1.01866 0.99263 0.93632 1.23613 0.97964 0.92456 0.89924 1.89166 1.72271 1.30738 1.38092 1.22903 0.94778 0.86681 0.93369 0.92350 1.21776 1.03610 1.01594 0.92992 1.18152 0.91608 0.91474 1.12696 1.21276 1.01129 0.88392 0.93421 1.20551 0.89258 1.00625 1.10362 1.19913 0.93070 0.84938 0.93130 1.83481 1.20437 1.28213 1.81578 1.20706 0.78587 0.96323 1.52387 0.90481 1.25404 0.95469 1.03098 0.95047 1.69747 1.06032 1.31526 1.48775 0.85133 0.78811 0.76644 0.79621 1.18821 1.19387 1.17943 1.21157 1.00257 0.92977 1.12246 1.21063 0.94624 0.96154 0.94057 0.87456 0.87115 0.89561 0.75470 0.85698 0.90071 0.85961 0.93067 0.89840 0.91585 0.91424 0.80073 0.83409 0.90406 0.87764 0.86902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.04 71.24 0.64 -1.01 16 2 C 0.17 4.00 7.10 45.26 0.32 4.32 16 3 N -0.31 -8.89 10.15 -42.88 -0.44 -9.33 16 4 N -0.57 -11.85 6.07 -173.51 -1.05 -12.90 16 5 C 0.53 12.74 7.07 87.66 0.62 13.36 16 6 O -0.56 -19.87 15.80 -3.13 -0.05 -19.92 16 7 C -0.13 -1.82 3.05 -10.53 -0.03 -1.85 16 8 H 0.15 1.20 7.87 -2.39 -0.02 1.18 16 9 C -0.14 -1.27 6.70 31.61 0.21 -1.06 16 10 C 0.04 0.46 7.64 72.49 0.55 1.01 16 11 O -0.38 -7.08 11.35 -148.98 -1.69 -8.77 16 12 C 0.08 1.54 3.27 31.10 0.10 1.65 16 13 H 0.06 1.50 6.93 -2.39 -0.02 1.48 16 14 C -0.14 -2.27 9.52 71.98 0.69 -1.59 16 15 C -0.14 -4.09 5.87 -20.12 -0.12 -4.21 16 16 C -0.02 -0.57 9.35 22.53 0.21 -0.36 16 17 C -0.19 -6.31 9.97 22.35 0.22 -6.09 16 18 C 0.14 6.33 6.65 22.67 0.15 6.48 16 19 O -0.23 -12.14 8.58 -21.46 -0.18 -12.33 16 20 C -0.40 -23.72 9.94 67.92 0.68 -23.04 16 21 H 0.08 4.85 5.42 -2.91 -0.02 4.83 16 22 C 0.01 0.50 5.49 84.83 0.47 0.97 16 23 N -0.92 -55.18 13.96 21.61 0.30 -54.87 16 24 Si 0.98 44.22 28.62 68.60 1.96 46.18 16 25 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 28 C -0.25 -11.27 9.15 22.35 0.20 -11.07 16 29 C -0.04 -1.51 9.57 22.53 0.22 -1.30 16 30 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.11 0.79 6.44 -2.39 -0.02 0.77 16 32 H 0.09 0.56 6.35 -2.38 -0.02 0.55 16 33 H 0.40 4.55 6.44 -213.32 -1.37 3.17 16 34 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.08 0.79 7.72 -2.39 -0.02 0.77 16 36 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.18 2.51 6.34 -2.91 -0.02 2.50 16 42 H 0.15 4.22 8.06 -2.91 -0.02 4.19 16 43 H 0.29 15.66 8.31 -92.71 -0.77 14.89 16 44 H 0.10 5.36 5.62 -2.91 -0.02 5.34 16 45 H 0.11 4.58 7.55 -2.91 -0.02 4.56 16 Total: -1.00 -81.43 375.27 3.65 -77.78 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -0.34 Total: 17.94 kcal Atomic # 6 Polarization: -28.90 SS G_CDS: 5.13 Total: -23.77 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -1.19 Total: -77.11 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -1.92 Total: -41.02 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.96 Total: 46.18 kcal Total: -81.43 3.65 -77.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842559484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.091 kcal (2) G-P(sol) polarization free energy of solvation -81.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds