Wall clock time and date at job start Tue Mar 31 2020 17:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29834 * 120.00068 * 2 1 4 4 N 1.40105 * 119.99838 * 359.97438 * 3 2 1 5 5 C 1.34772 * 119.99663 * 180.02562 * 4 3 2 6 6 O 1.21312 * 120.00352 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.99856 * 180.02562 * 5 4 3 8 8 H 1.09004 * 110.80488 * 62.16905 * 7 5 4 9 9 C 1.54812 * 110.90497 * 298.54551 * 7 5 4 10 10 C 1.54101 * 104.18906 * 220.92093 * 9 7 5 11 11 O 1.43751 * 107.29036 * 357.96985 * 10 9 7 12 12 C 1.44377 * 106.97544 * 26.51603 * 11 10 9 13 13 H 1.08998 * 110.62022 * 78.44015 * 12 11 10 14 14 C 1.52999 * 110.61742 * 201.43964 * 12 11 10 15 15 C 1.47353 * 120.00219 * 179.71883 * 2 1 3 16 16 C 1.39809 * 120.08570 * 359.73225 * 15 2 1 17 17 C 1.37717 * 119.91046 * 179.71341 * 16 15 2 18 18 C 1.39081 * 120.08797 * 0.55571 * 17 16 15 19 19 O 1.35658 * 119.90992 * 179.69157 * 18 17 16 20 20 C 1.34806 * 116.99395 * 174.46832 * 19 18 17 21 21 H 1.07996 * 120.00494 * 5.06696 * 20 19 18 22 22 C 1.38644 * 119.99809 * 185.05868 * 20 19 18 23 23 N 1.31562 * 120.00141 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 119.99934 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47143 * 89.99312 * 24 22 20 26 26 H 1.48501 * 109.47051 * 209.99890 * 24 22 20 27 27 H 1.48505 * 109.46881 * 329.99702 * 24 22 20 28 28 C 1.39077 * 120.17426 * 359.72168 * 18 17 16 29 29 C 1.37708 * 120.08781 * 359.97438 * 28 18 17 30 30 H 1.09000 * 109.47217 * 90.00220 * 1 2 3 31 31 H 1.09004 * 109.47217 * 210.00448 * 1 2 3 32 32 H 1.09009 * 109.47281 * 330.00092 * 1 2 3 33 33 H 0.96999 * 119.99907 * 359.97438 * 4 3 2 34 34 H 1.08997 * 110.49000 * 339.59661 * 9 7 5 35 35 H 1.09000 * 110.49055 * 102.24696 * 9 7 5 36 36 H 1.09001 * 109.88041 * 117.38939 * 10 9 7 37 37 H 1.08997 * 109.88173 * 238.39544 * 10 9 7 38 38 H 1.08998 * 109.47571 * 174.06723 * 14 12 11 39 39 H 1.09003 * 109.47296 * 294.06932 * 14 12 11 40 40 H 1.09004 * 109.47522 * 54.06417 * 14 12 11 41 41 H 1.07997 * 120.04400 * 359.97388 * 16 15 2 42 42 H 1.08007 * 119.95486 * 180.29212 * 17 16 15 43 43 H 0.97003 * 119.99796 * 180.02562 * 23 22 20 44 44 H 1.08004 * 119.95489 * 180.02562 * 28 18 17 45 45 H 1.07999 * 120.04341 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1561 1.1244 0.0000 4 7 1.4556 2.3377 -0.0005 5 6 2.1295 3.5049 -0.0011 6 8 3.3426 3.5049 -0.0006 7 6 1.3760 4.8100 -0.0011 8 1 0.7708 4.9076 0.9002 9 6 0.5008 4.9426 -1.2712 10 6 0.6711 6.4142 -1.6953 11 8 1.5184 7.0447 -0.7201 12 6 2.3468 6.0092 -0.1491 13 1 3.1666 5.7586 -0.8223 14 6 2.8827 6.4403 1.2176 15 6 2.2438 -1.2761 0.0063 16 6 1.5466 -2.4879 0.0179 17 6 2.2388 -3.6784 0.0177 18 6 3.6296 -3.6763 0.0177 19 8 4.3079 -4.8511 0.0239 20 6 5.6492 -4.7839 -0.0922 21 1 6.1430 -3.8235 -0.1022 22 6 6.3950 -5.9478 -0.1987 23 7 7.7041 -5.8823 -0.3115 24 14 5.5409 -7.6091 -0.1819 25 1 5.1919 -8.0003 -1.5713 26 1 6.4491 -8.6267 0.4056 27 1 4.3028 -7.5210 0.6333 28 6 4.3268 -2.4729 0.0120 29 6 3.6419 -1.2782 0.0058 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3634 0.8901 0.5139 33 1 0.4856 2.3377 -0.0013 34 1 0.8614 4.2757 -2.0543 35 1 -0.5429 4.7308 -1.0391 36 1 1.1374 6.4648 -2.6793 37 1 -0.3004 6.9077 -1.7199 38 1 3.4165 5.6087 1.6775 39 1 3.5622 7.2833 1.0920 40 1 2.0511 6.7363 1.8571 41 1 0.4666 -2.4903 0.0227 42 1 1.7009 -4.6150 0.0219 43 1 8.2258 -6.6967 -0.3864 44 1 5.4069 -2.4754 0.0116 45 1 4.1841 -0.3442 0.0018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842559486.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:04 Heat of formation + Delta-G solvation = -64.959361 kcal Electronic energy + Delta-G solvation = -27173.478455 eV Core-core repulsion = 23156.945261 eV Total energy + Delta-G solvation = -4016.533194 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.56249 -40.97728 -39.77842 -38.93435 -37.46126 -34.62682 -34.25903 -33.29939 -32.47499 -32.07153 -30.33204 -29.29794 -27.64318 -27.20059 -24.27880 -23.59582 -23.19328 -22.74689 -21.35048 -20.89489 -19.74598 -19.23887 -18.82759 -17.65529 -17.24909 -16.76957 -16.67292 -16.16507 -16.05014 -15.81176 -15.75304 -15.66927 -15.55075 -14.95090 -14.85881 -14.68657 -14.42727 -14.24122 -14.08533 -13.53262 -13.39185 -13.25785 -13.14326 -13.03199 -12.72472 -12.70423 -12.47404 -12.44621 -12.34486 -12.16536 -11.94887 -11.78028 -11.43738 -11.15416 -10.97761 -10.94155 -10.69571 -10.15996 -9.89815 -8.80141 -8.52954 -6.26379 -0.06486 0.55418 1.16427 1.33056 1.38210 1.45261 1.53712 1.81044 2.27151 2.70528 2.78178 3.00304 3.14069 3.32916 3.48702 3.51135 3.56655 3.88454 3.99151 4.07009 4.11253 4.16298 4.19917 4.29946 4.32983 4.46399 4.53923 4.65518 4.67241 4.71100 4.78340 4.81206 4.86630 4.93234 4.98323 5.01739 5.16915 5.19070 5.20439 5.34001 5.54387 5.60791 5.73449 5.82945 5.83503 6.09332 6.14098 6.52172 6.79727 7.42051 7.49645 8.58260 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024348 B = 0.002007 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.714850 B =13944.827978 C =14759.563703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.169 3.831 3 N -0.306 5.306 4 N -0.569 5.569 5 C 0.536 3.464 6 O -0.557 6.557 7 C -0.127 4.127 8 H 0.145 0.855 9 C -0.142 4.142 10 C 0.041 3.959 11 O -0.386 6.386 12 C 0.090 3.910 13 H 0.058 0.942 14 C -0.143 4.143 15 C -0.136 4.136 16 C -0.023 4.023 17 C -0.189 4.189 18 C 0.141 3.859 19 O -0.231 6.231 20 C -0.404 4.404 21 H 0.078 0.922 22 C 0.009 3.991 23 N -0.921 5.921 24 Si 0.977 3.023 25 H -0.263 1.263 26 H -0.269 1.269 27 H -0.256 1.256 28 C -0.247 4.247 29 C -0.039 4.039 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.402 0.598 34 H 0.074 0.926 35 H 0.126 0.874 36 H 0.059 0.941 37 H 0.114 0.886 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.182 0.818 42 H 0.148 0.852 43 H 0.286 0.714 44 H 0.104 0.896 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.283 19.588 -0.101 31.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.018 4.018 3 N -0.113 5.113 4 N -0.313 5.313 5 C 0.324 3.676 6 O -0.432 6.432 7 C -0.150 4.150 8 H 0.163 0.837 9 C -0.180 4.180 10 C -0.035 4.035 11 O -0.306 6.306 12 C 0.032 3.968 13 H 0.076 0.924 14 C -0.200 4.200 15 C -0.139 4.139 16 C -0.042 4.042 17 C -0.208 4.208 18 C 0.089 3.911 19 O -0.137 6.137 20 C -0.480 4.480 21 H 0.095 0.905 22 C -0.190 4.190 23 N -0.561 5.561 24 Si 0.798 3.202 25 H -0.188 1.188 26 H -0.194 1.194 27 H -0.179 1.179 28 C -0.266 4.266 29 C -0.059 4.059 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.104 0.896 33 H 0.245 0.755 34 H 0.093 0.907 35 H 0.144 0.856 36 H 0.078 0.922 37 H 0.132 0.868 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.199 0.801 42 H 0.166 0.834 43 H 0.096 0.904 44 H 0.122 0.878 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -23.467 20.086 -0.049 30.890 hybrid contribution 0.187 -0.981 -0.173 1.013 sum -23.280 19.106 -0.222 30.117 Atomic orbital electron populations 1.21499 0.88276 1.05984 1.05640 1.23454 0.95787 0.89913 0.92688 1.75216 1.25527 0.92214 1.18380 1.46734 1.09284 1.02279 1.73027 1.20852 0.87732 0.84355 0.74699 1.90736 1.16160 1.87584 1.48753 1.22979 0.98262 0.89879 1.03839 0.83744 1.23042 1.02271 0.97752 0.94934 1.23349 0.96087 0.92136 0.91958 1.88898 1.53283 1.32115 1.56313 1.22862 0.92249 0.85265 0.96391 0.92389 1.21745 1.02021 1.02026 0.94234 1.18151 0.91612 0.91474 1.12675 1.21276 1.01126 0.88401 0.93434 1.20550 0.89261 1.00622 1.10371 1.19914 0.93069 0.84944 0.93140 1.83482 1.20430 1.28221 1.81589 1.20706 0.78575 0.96320 1.52387 0.90475 1.25407 0.95471 1.03099 0.95057 1.69748 1.06021 1.31523 1.48784 0.85133 0.78813 0.76649 0.79614 1.18826 1.19389 1.17946 1.21158 1.00258 0.92978 1.12242 1.21063 0.94618 0.96159 0.94048 0.87411 0.87154 0.89596 0.75501 0.90731 0.85600 0.92227 0.86779 0.91828 0.91496 0.90118 0.80085 0.83425 0.90411 0.87761 0.86874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.04 71.23 0.64 -1.00 16 2 C 0.17 3.98 7.10 45.25 0.32 4.30 16 3 N -0.31 -8.83 10.15 -42.88 -0.44 -9.27 16 4 N -0.57 -11.77 6.06 -173.51 -1.05 -12.82 16 5 C 0.54 12.68 7.17 87.66 0.63 13.30 16 6 O -0.56 -19.49 16.02 -3.13 -0.05 -19.54 16 7 C -0.13 -1.82 2.95 -10.24 -0.03 -1.85 16 8 H 0.14 1.27 8.06 -2.38 -0.02 1.25 16 9 C -0.14 -1.24 6.55 31.59 0.21 -1.03 16 10 C 0.04 0.44 7.70 72.35 0.56 1.00 16 11 O -0.39 -6.87 11.22 -148.98 -1.67 -8.55 16 12 C 0.09 1.71 3.02 31.28 0.09 1.81 16 13 H 0.06 1.40 7.53 -2.39 -0.02 1.39 16 14 C -0.14 -2.50 9.65 71.98 0.69 -1.81 16 15 C -0.14 -4.08 5.87 -20.12 -0.12 -4.19 16 16 C -0.02 -0.58 9.36 22.53 0.21 -0.37 16 17 C -0.19 -6.31 9.97 22.35 0.22 -6.09 16 18 C 0.14 6.32 6.65 22.67 0.15 6.47 16 19 O -0.23 -12.15 8.58 -21.49 -0.18 -12.33 16 20 C -0.40 -23.70 9.94 67.92 0.68 -23.02 16 21 H 0.08 4.85 5.42 -2.91 -0.02 4.83 16 22 C 0.01 0.49 5.49 84.83 0.47 0.96 16 23 N -0.92 -55.15 13.96 21.61 0.30 -54.85 16 24 Si 0.98 44.21 28.62 68.60 1.96 46.18 16 25 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 28 C -0.25 -11.26 9.15 22.35 0.20 -11.06 16 29 C -0.04 -1.50 9.57 22.53 0.22 -1.29 16 30 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.11 0.79 6.44 -2.39 -0.02 0.77 16 32 H 0.09 0.57 6.35 -2.38 -0.02 0.55 16 33 H 0.40 4.49 6.43 -213.32 -1.37 3.12 16 34 H 0.07 0.80 7.85 -2.39 -0.02 0.78 16 35 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.06 1.29 8.02 -2.39 -0.02 1.27 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.18 2.51 6.34 -2.91 -0.02 2.49 16 42 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 43 H 0.29 15.65 8.31 -92.71 -0.77 14.88 16 44 H 0.10 5.35 5.62 -2.91 -0.02 5.34 16 45 H 0.11 4.58 7.55 -2.91 -0.02 4.55 16 Total: -1.00 -80.92 375.95 3.68 -77.25 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -0.34 Total: 17.78 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: 5.14 Total: -23.85 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -1.19 Total: -76.94 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -1.91 Total: -40.42 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.96 Total: 46.18 kcal Total: -80.92 3.68 -77.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842559486.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.289 kcal (2) G-P(sol) polarization free energy of solvation -80.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds