Wall clock time and date at job start Tue Mar 31 2020 17:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29830 * 119.99652 * 2 1 4 4 N 1.40098 * 120.00492 * 359.97438 * 3 2 1 5 5 C 1.34772 * 120.00277 * 180.02562 * 4 3 2 6 6 O 1.21315 * 120.00289 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.00248 * 179.97438 * 5 4 3 8 8 H 1.09007 * 110.45388 * 36.56632 * 7 5 4 9 9 C 1.54508 * 110.51384 * 159.31707 * 7 5 4 10 10 C 1.54473 * 104.06255 * 118.64765 * 9 7 5 11 11 O 1.44425 * 104.80202 * 336.02205 * 10 9 7 12 12 C 1.44423 * 105.27684 * 40.51158 * 11 10 9 13 13 H 1.09004 * 110.36620 * 78.31713 * 12 11 10 14 14 C 1.52997 * 110.37186 * 200.65386 * 12 11 10 15 15 C 1.47352 * 120.00362 * 179.97438 * 2 1 3 16 16 C 1.39807 * 120.09169 * 180.02562 * 15 2 1 17 17 C 1.37715 * 119.91421 * 180.02562 * 16 15 2 18 18 C 1.39080 * 120.08720 * 359.97438 * 17 16 15 19 19 O 1.35650 * 119.90970 * 179.97438 * 18 17 16 20 20 C 1.34812 * 117.00248 * 5.84867 * 19 18 17 21 21 H 1.07996 * 119.99635 * 354.59458 * 20 19 18 22 22 C 1.38637 * 119.99900 * 174.87378 * 20 19 18 23 23 N 1.31565 * 119.99885 * 359.72129 * 22 20 19 24 24 Si 1.86800 * 119.99823 * 179.72205 * 22 20 19 25 25 H 1.48496 * 109.47439 * 60.00077 * 24 22 20 26 26 H 1.48505 * 109.47019 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47152 * 299.99661 * 24 22 20 28 28 C 1.39073 * 120.17447 * 0.25875 * 18 17 16 29 29 C 1.37720 * 120.08669 * 359.48378 * 28 18 17 30 30 H 1.08997 * 109.47102 * 270.00412 * 1 2 3 31 31 H 1.08999 * 109.46865 * 30.00258 * 1 2 3 32 32 H 1.09000 * 109.46612 * 150.00099 * 1 2 3 33 33 H 0.96999 * 119.99948 * 359.97438 * 4 3 2 34 34 H 1.09004 * 110.50971 * 237.29257 * 9 7 5 35 35 H 1.08998 * 110.50906 * 359.97438 * 9 7 5 36 36 H 1.09000 * 110.37400 * 217.19093 * 10 9 7 37 37 H 1.09003 * 110.46818 * 94.90156 * 10 9 7 38 38 H 1.09003 * 109.46796 * 170.34670 * 14 12 11 39 39 H 1.08994 * 109.47544 * 290.34795 * 14 12 11 40 40 H 1.09004 * 109.47090 * 50.34797 * 14 12 11 41 41 H 1.08005 * 120.04181 * 0.02562 * 16 15 2 42 42 H 1.08004 * 119.95471 * 179.97438 * 17 16 15 43 43 H 0.97004 * 119.99661 * 180.02562 * 23 22 20 44 44 H 1.08003 * 119.95672 * 179.72113 * 28 18 17 45 45 H 1.08004 * 120.04125 * 180.28077 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1561 1.1244 0.0000 4 7 1.4557 2.3377 -0.0005 5 6 2.1295 3.5049 -0.0011 6 8 3.3427 3.5050 -0.0006 7 6 1.3760 4.8100 -0.0022 8 1 0.4749 4.7302 0.6059 9 6 2.2776 5.9562 0.5085 10 6 2.3590 6.9309 -0.6872 11 8 2.0857 6.1153 -1.8474 12 6 1.0193 5.2278 -1.4460 13 1 0.0632 5.7509 -1.4644 14 6 0.9747 4.0015 -2.3598 15 6 2.2439 -1.2761 0.0006 16 6 3.6420 -1.2782 0.0011 17 6 4.3269 -2.4729 0.0011 18 6 3.6297 -3.6764 0.0011 19 8 4.3080 -4.8511 0.0006 20 6 5.6489 -4.7837 0.1225 21 1 6.1430 -3.8234 0.1270 22 6 6.3940 -5.9473 0.2363 23 7 5.7919 -7.1170 0.2308 24 14 8.2527 -5.8541 0.3973 25 1 8.6059 -5.0814 1.6153 26 1 8.8098 -7.2267 0.5024 27 1 8.8200 -5.1803 -0.7982 28 6 2.2390 -3.6785 -0.0043 29 6 1.5467 -2.4879 0.0010 30 1 -0.3633 0.0001 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3632 -0.8900 -0.5138 33 1 0.4857 2.3377 -0.0013 34 1 1.8224 6.4453 1.3697 35 1 3.2681 5.5787 0.7622 36 1 3.3562 7.3655 -0.7553 37 1 1.6094 7.7163 -0.5904 38 1 0.2855 3.2652 -1.9462 39 1 0.6355 4.2997 -3.3518 40 1 1.9713 3.5659 -2.4323 41 1 4.1841 -0.3441 0.0015 42 1 5.4070 -2.4754 0.0011 43 1 6.3132 -7.9312 0.3108 44 1 1.7011 -4.6151 -0.0089 45 1 0.4667 -2.4905 0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842559487.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:10 Heat of formation + Delta-G solvation = -39.608876 kcal Electronic energy + Delta-G solvation = -27494.335228 eV Core-core repulsion = 23478.901314 eV Total energy + Delta-G solvation = -4015.433914 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.82801 -39.24014 -38.60631 -37.41648 -35.96621 -33.41625 -32.55889 -32.15128 -31.73929 -30.48693 -28.74696 -28.18361 -26.73861 -25.51721 -23.31200 -22.47085 -21.94448 -21.74102 -20.21662 -19.50745 -18.05516 -17.73898 -17.08327 -16.83496 -16.26458 -15.94101 -15.72764 -15.09799 -14.90835 -14.46524 -14.41274 -14.15050 -14.03060 -13.82952 -13.65719 -13.24791 -12.89749 -12.78169 -12.61475 -12.57109 -12.36381 -12.24160 -11.87007 -11.76407 -11.61562 -11.44244 -11.29069 -11.24052 -11.15629 -10.90469 -10.75421 -10.51610 -10.28317 -9.99944 -9.79606 -9.38974 -9.13659 -8.67913 -8.29292 -7.11929 -6.57652 -4.13604 1.35238 2.20151 2.43617 2.50900 2.98885 3.10230 3.13412 3.15236 3.48319 3.89162 4.00889 4.19722 4.39358 4.54173 4.61563 4.65622 4.72195 4.88339 4.90455 4.94003 4.98195 5.00978 5.05769 5.15978 5.16151 5.33698 5.41364 5.43500 5.52096 5.62952 5.72638 5.77069 5.79654 5.84337 6.02931 6.17942 6.35099 6.44820 6.56062 6.84113 6.94710 7.09269 7.12852 7.28496 7.33911 7.66082 7.69545 7.88157 8.48605 8.87625 9.54071 10.59059 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019316 B = 0.002173 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.198052 B =12880.806998 C =13902.805567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.172 3.828 3 N -0.266 5.266 4 N -0.586 5.586 5 C 0.540 3.460 6 O -0.500 6.500 7 C -0.140 4.140 8 H 0.106 0.894 9 C -0.145 4.145 10 C 0.048 3.952 11 O -0.364 6.364 12 C 0.087 3.913 13 H 0.082 0.918 14 C -0.158 4.158 15 C -0.165 4.165 16 C -0.020 4.020 17 C -0.243 4.243 18 C 0.168 3.832 19 O -0.165 6.165 20 C -0.392 4.392 21 H 0.096 0.904 22 C 0.041 3.959 23 N -0.855 5.855 24 Si 0.943 3.057 25 H -0.268 1.268 26 H -0.277 1.277 27 H -0.268 1.268 28 C -0.198 4.198 29 C -0.043 4.043 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.377 0.623 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.121 0.879 42 H 0.131 0.869 43 H 0.273 0.727 44 H 0.122 0.878 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.216 21.969 -0.071 26.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.015 4.015 3 N -0.073 5.073 4 N -0.328 5.328 5 C 0.326 3.674 6 O -0.372 6.372 7 C -0.163 4.163 8 H 0.124 0.876 9 C -0.183 4.183 10 C -0.029 4.029 11 O -0.283 6.283 12 C 0.029 3.971 13 H 0.100 0.900 14 C -0.215 4.215 15 C -0.169 4.169 16 C -0.040 4.040 17 C -0.262 4.262 18 C 0.111 3.889 19 O -0.066 6.066 20 C -0.467 4.467 21 H 0.114 0.886 22 C -0.164 4.164 23 N -0.489 5.489 24 Si 0.767 3.233 25 H -0.193 1.193 26 H -0.202 1.202 27 H -0.193 1.193 28 C -0.217 4.217 29 C -0.063 4.063 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.216 0.784 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.139 0.861 42 H 0.148 0.852 43 H 0.083 0.917 44 H 0.140 0.860 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.381 22.056 -0.286 25.295 hybrid contribution -0.604 -0.181 0.358 0.725 sum -12.986 21.875 0.072 25.439 Atomic orbital electron populations 1.21342 0.93185 1.03635 1.03450 1.23328 0.92908 0.91862 0.93365 1.75307 1.22580 0.90383 1.18993 1.47003 1.08014 1.03731 1.74078 1.19965 0.88223 0.83208 0.75984 1.90719 1.13643 1.86553 1.46286 1.22811 1.00247 0.93626 0.99626 0.87624 1.22994 1.01996 0.94456 0.98815 1.23406 1.01983 0.93230 0.84287 1.89205 1.54207 1.50461 1.34394 1.22882 0.91624 0.91728 0.90882 0.90000 1.21991 1.03687 0.95797 1.00012 1.17625 0.92722 0.88807 1.17793 1.21001 0.92815 0.97448 0.92784 1.21133 1.00879 0.91742 1.12470 1.19583 0.91717 0.86385 0.91183 1.83927 1.21315 1.25313 1.76073 1.21402 0.78387 0.95014 1.51944 0.88630 1.25357 1.00874 0.94104 0.96101 1.70032 1.36780 0.97618 1.44446 0.85734 0.80014 0.78037 0.79473 1.19269 1.20157 1.19277 1.20085 0.91391 0.98021 1.12252 1.20698 0.98300 0.90713 0.96606 0.89838 0.92021 0.89213 0.78387 0.89787 0.88283 0.88634 0.92080 0.91274 0.91075 0.90921 0.86096 0.85158 0.91685 0.86018 0.86387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.03 36.01 0.33 -1.15 16 2 C 0.17 2.48 7.10 -79.73 -0.57 1.92 16 3 N -0.27 -4.26 10.15 35.10 0.36 -3.90 16 4 N -0.59 -7.25 5.18 31.22 0.16 -7.09 16 5 C 0.54 7.18 5.32 -10.99 -0.06 7.12 16 6 O -0.50 -9.10 15.86 5.53 0.09 -9.01 16 7 C -0.14 -1.21 3.43 -90.21 -0.31 -1.52 16 8 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 9 C -0.14 -1.20 6.62 -25.17 -0.17 -1.37 16 10 C 0.05 0.38 7.63 37.93 0.29 0.67 16 11 O -0.36 -4.04 11.34 -35.23 -0.40 -4.44 16 12 C 0.09 0.74 3.83 -25.96 -0.10 0.64 16 13 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 14 C -0.16 -1.45 8.41 37.16 0.31 -1.14 16 15 C -0.17 -2.85 5.87 -105.01 -0.62 -3.46 16 16 C -0.02 -0.40 9.57 -39.19 -0.37 -0.77 16 17 C -0.24 -5.28 9.15 -39.46 -0.36 -5.64 16 18 C 0.17 3.91 6.65 -38.96 -0.26 3.65 16 19 O -0.17 -4.55 9.75 0.41 0.00 -4.55 16 20 C -0.39 -10.65 9.48 30.88 0.29 -10.35 16 21 H 0.10 2.42 5.19 -52.49 -0.27 2.14 16 22 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 23 N -0.86 -24.31 13.67 55.48 0.76 -23.55 16 24 Si 0.94 20.13 29.55 -169.99 -5.02 15.10 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 27 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 28 C -0.20 -3.89 9.97 -39.46 -0.39 -4.29 16 29 C -0.04 -0.70 9.35 -39.18 -0.37 -1.06 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.45 6.35 -51.93 -0.33 0.12 16 32 H 0.09 0.76 6.47 -51.93 -0.34 0.43 16 33 H 0.38 3.23 5.89 -182.60 -1.07 2.16 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 1.09 6.72 -51.93 -0.35 0.74 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.51 6.92 -51.93 -0.36 0.15 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.93 7.29 -51.93 -0.38 0.55 16 41 H 0.12 2.35 7.55 -52.48 -0.40 1.95 16 42 H 0.13 2.85 5.62 -52.48 -0.30 2.55 16 43 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.12 2.26 8.06 -52.48 -0.42 1.83 16 45 H 0.12 1.46 6.35 -52.48 -0.33 1.12 16 LS Contribution 371.45 15.07 5.60 5.60 Total: -1.00 -34.31 371.45 -7.55 -41.86 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.64 Total: 5.72 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -2.45 Total: -15.74 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 1.28 Total: -34.54 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.31 Total: -18.00 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.31 -7.55 -41.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842559487.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.252 kcal (2) G-P(sol) polarization free energy of solvation -34.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds