Wall clock time and date at job start Tue Mar 31 2020 17:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.09006 * 110.42238 * 2 1 4 4 O 1.44786 * 110.48878 * 122.45599 * 2 1 3 5 5 C 1.44426 * 105.29684 * 159.32712 * 4 2 1 6 6 C 1.54483 * 104.80358 * 319.45448 * 5 4 2 7 7 C 1.54483 * 110.37500 * 237.69250 * 2 1 3 8 8 H 1.09001 * 110.50971 * 98.40845 * 7 2 1 9 9 C 1.50699 * 110.50830 * 335.83373 * 7 2 1 10 10 O 1.21280 * 120.00012 * 280.49583 * 9 7 2 11 11 N 1.34775 * 119.99862 * 100.50156 * 9 7 2 12 12 N 1.40100 * 119.99971 * 180.02562 * 11 9 7 13 13 C 1.34775 * 119.99971 * 179.97438 * 12 11 9 14 14 O 1.21280 * 120.00126 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.00187 * 179.97438 * 13 12 11 16 16 C 1.50697 * 109.47480 * 179.97438 * 15 13 12 17 17 C 1.37632 * 120.12923 * 265.00357 * 16 15 13 18 18 C 1.38615 * 120.24873 * 180.02562 * 17 16 15 19 19 C 1.38651 * 120.50231 * 359.97438 * 18 17 16 20 20 C 1.37592 * 120.24832 * 0.02562 * 19 18 17 21 21 C 1.40696 * 120.12562 * 85.02015 * 16 15 13 22 22 C 1.41396 * 120.24555 * 0.02562 * 21 16 15 23 23 H 1.07998 * 120.00079 * 333.15260 * 22 21 16 24 24 C 1.39947 * 119.99824 * 153.15396 * 22 21 16 25 25 N 1.30825 * 120.00104 * 346.17611 * 24 22 21 26 26 Si 1.86806 * 119.99890 * 166.17615 * 24 22 21 27 27 H 1.48491 * 109.47372 * 59.99632 * 26 24 22 28 28 H 1.48496 * 109.47267 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.46783 * 299.99678 * 26 24 22 30 30 H 1.09001 * 109.47555 * 188.11353 * 1 2 3 31 31 H 1.09004 * 109.47300 * 308.11262 * 1 2 3 32 32 H 1.09004 * 109.47253 * 68.11564 * 1 2 3 33 33 H 1.08999 * 110.37230 * 200.62208 * 5 4 2 34 34 H 1.09003 * 110.46703 * 78.33446 * 5 4 2 35 35 H 1.09002 * 110.51360 * 265.33379 * 6 5 4 36 36 H 1.08997 * 110.50915 * 142.62223 * 6 5 4 37 37 H 0.97003 * 120.00049 * 359.97438 * 11 9 7 38 38 H 0.97003 * 119.99801 * 359.97438 * 12 11 9 39 39 H 1.09003 * 109.46915 * 59.99311 * 15 13 12 40 40 H 1.09005 * 109.46757 * 300.00223 * 15 13 12 41 41 H 1.08004 * 119.87867 * 359.74216 * 17 16 15 42 42 H 1.08003 * 119.74771 * 179.97438 * 18 17 16 43 43 H 1.07997 * 119.87646 * 180.02562 * 19 18 17 44 44 H 1.08001 * 120.13115 * 180.02562 * 20 19 18 45 45 H 0.96999 * 119.99624 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 8 2.0367 -0.7278 1.1444 5 6 3.3910 -1.0895 0.7967 6 6 3.3193 -1.5055 -0.6893 7 6 2.0677 -0.7740 -1.2240 8 1 2.3406 -0.0840 -2.0224 9 6 1.0443 -1.7665 -1.7124 10 8 0.9092 -2.8284 -1.1423 11 7 0.2794 -1.4742 -2.7829 12 7 -0.6724 -2.3967 -3.2366 13 6 -1.4377 -2.1041 -4.3068 14 8 -1.3027 -1.0421 -4.8766 15 6 -2.4611 -3.0966 -4.7953 16 6 -3.1772 -2.5309 -5.9945 17 6 -4.3750 -1.8717 -5.8364 18 6 -5.0361 -1.3508 -6.9378 19 6 -4.5001 -1.4864 -8.2093 20 6 -3.3039 -2.1415 -8.3910 21 6 -2.6240 -2.6748 -7.2801 22 6 -1.3945 -3.3508 -7.4548 23 1 -0.6742 -3.3781 -6.6505 24 6 -1.1109 -3.9846 -8.6699 25 7 -2.0666 -4.1892 -9.5395 26 14 0.6322 -4.5383 -9.0500 27 1 1.0762 -5.5152 -8.0237 28 1 0.6675 -5.1770 -10.3902 29 1 1.5387 -3.3620 -9.0388 30 1 -0.3634 -1.0174 0.1450 31 1 -0.3634 0.6343 0.8086 32 1 -0.3634 0.3831 -0.9536 33 1 3.7295 -1.9255 1.4088 34 1 4.0572 -0.2356 0.9200 35 1 3.1978 -2.5851 -0.7784 36 1 4.2112 -1.1754 -1.2218 37 1 0.3874 -0.6247 -3.2387 38 1 -0.7805 -3.2460 -2.7806 39 1 -3.1821 -3.2952 -4.0022 40 1 -1.9626 -4.0251 -5.0739 41 1 -4.8038 -1.7638 -4.8510 42 1 -5.9757 -0.8353 -6.8044 43 1 -5.0235 -1.0762 -9.0603 44 1 -2.8879 -2.2457 -9.3822 45 1 -1.8701 -4.6288 -10.3816 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843661000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:15 Heat of formation + Delta-G solvation = -70.848476 kcal Electronic energy + Delta-G solvation = -28342.369328 eV Core-core repulsion = 24325.580763 eV Total energy + Delta-G solvation = -4016.788565 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.92198 -39.49390 -38.32174 -37.31690 -35.05585 -33.65065 -33.05481 -32.02920 -31.82751 -30.55327 -29.47313 -27.05882 -26.38593 -25.01406 -22.90934 -22.41449 -21.36859 -20.96102 -20.34017 -19.24293 -17.95305 -17.46908 -17.18317 -16.72220 -15.98841 -15.78225 -15.64932 -15.42517 -15.17688 -14.58367 -14.54800 -14.12085 -13.72088 -13.46171 -13.32897 -13.13463 -12.70438 -12.60908 -12.56483 -12.34302 -11.81641 -11.64725 -11.59721 -11.43435 -11.35321 -11.27995 -11.15615 -11.02986 -10.90480 -10.74082 -10.43292 -10.28415 -9.98816 -9.54187 -9.51052 -9.39549 -9.20842 -8.17873 -7.36203 -7.32609 -6.75036 -4.39464 1.93655 2.29886 2.79262 2.99607 3.04362 3.07412 3.13998 3.24701 3.52459 3.91119 3.94669 4.13536 4.33649 4.58299 4.64896 4.72723 4.80075 4.94123 4.99404 5.08462 5.24937 5.35755 5.44573 5.51098 5.61069 5.70965 5.74959 5.90977 5.91549 5.99805 6.24334 6.36252 6.47528 6.49221 6.72474 6.82949 6.87173 7.05493 7.26003 7.38416 7.59613 7.72756 7.88390 7.99302 8.02641 8.09561 8.27407 8.60810 8.69271 8.87610 8.97107 10.18458 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014324 B = 0.003045 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.349052 B = 9192.979493 C =10677.748614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.090 3.910 3 H 0.084 0.916 4 O -0.364 6.364 5 C 0.048 3.952 6 C -0.141 4.141 7 C -0.134 4.134 8 H 0.107 0.893 9 C 0.523 3.477 10 O -0.536 6.536 11 N -0.520 5.520 12 N -0.539 5.539 13 C 0.517 3.483 14 O -0.520 6.520 15 C -0.059 4.059 16 C -0.184 4.184 17 C -0.079 4.079 18 C -0.238 4.238 19 C -0.106 4.106 20 C -0.157 4.157 21 C 0.130 3.870 22 C -0.457 4.457 23 H 0.073 0.927 24 C 0.077 3.923 25 N -0.796 5.796 26 Si 0.904 3.096 27 H -0.266 1.266 28 H -0.278 1.278 29 H -0.265 1.265 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.429 0.571 38 H 0.427 0.573 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.119 0.881 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.063 5.146 14.382 17.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.032 3.968 3 H 0.102 0.898 4 O -0.283 6.283 5 C -0.028 4.028 6 C -0.179 4.179 7 C -0.158 4.158 8 H 0.125 0.875 9 C 0.309 3.691 10 O -0.412 6.412 11 N -0.266 5.266 12 N -0.291 5.291 13 C 0.305 3.695 14 O -0.392 6.392 15 C -0.100 4.100 16 C -0.186 4.186 17 C -0.097 4.097 18 C -0.258 4.258 19 C -0.125 4.125 20 C -0.176 4.176 21 C 0.127 3.873 22 C -0.487 4.487 23 H 0.091 0.909 24 C -0.141 4.141 25 N -0.422 5.422 26 Si 0.729 3.271 27 H -0.190 1.190 28 H -0.203 1.203 29 H -0.190 1.190 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.271 0.729 38 H 0.269 0.731 39 H 0.101 0.899 40 H 0.121 0.879 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.137 0.863 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.885 4.997 14.302 17.563 hybrid contribution 0.944 -0.192 -0.589 1.129 sum 9.828 4.805 13.713 17.543 Atomic orbital electron populations 1.21977 0.92705 1.04024 1.03039 1.22934 0.95813 0.94851 0.83248 0.89808 1.89253 1.27067 1.74359 1.37595 1.23381 0.84651 1.00001 0.94814 1.22964 0.95827 1.02828 0.96274 1.22724 0.95269 0.97519 1.00254 0.87472 1.20348 0.81492 0.88341 0.78950 1.90721 1.69022 1.24939 1.56523 1.44976 1.33475 1.17414 1.30738 1.45484 1.33857 1.16949 1.32765 1.21810 0.80953 0.89514 0.77256 1.90698 1.68078 1.25168 1.55264 1.20214 0.95007 0.97538 0.97262 1.18981 0.96779 1.09908 0.92968 1.20312 0.95191 0.97893 0.96351 1.20323 1.01545 1.10643 0.93260 1.20700 0.96675 0.99674 0.95417 1.21340 0.96052 1.00597 0.99627 1.17339 0.91686 0.88241 0.89998 1.19444 1.01560 1.29153 0.98547 0.90894 1.25871 0.98433 0.94227 0.95539 1.69794 1.33018 1.31508 1.07832 0.86425 0.82855 0.79532 0.78276 1.19045 1.20265 1.18966 0.90949 0.91148 0.90743 0.88728 0.92066 0.88879 0.89615 0.72948 0.73138 0.89877 0.87924 0.89623 0.89577 0.89509 0.86325 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 8.56 37.15 0.32 -1.26 16 2 C 0.09 0.82 3.85 -25.96 -0.10 0.72 16 3 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 4 O -0.36 -4.08 11.36 -35.23 -0.40 -4.48 16 5 C 0.05 0.39 7.63 37.94 0.29 0.68 16 6 C -0.14 -1.18 6.59 -25.16 -0.17 -1.35 16 7 C -0.13 -1.23 3.42 -90.20 -0.31 -1.54 16 8 H 0.11 0.70 8.11 -51.93 -0.42 0.28 16 9 C 0.52 6.61 4.89 -10.99 -0.05 6.55 16 10 O -0.54 -8.45 15.58 5.56 0.09 -8.36 16 11 N -0.52 -6.91 6.06 31.22 0.19 -6.72 16 12 N -0.54 -8.14 6.26 31.22 0.20 -7.94 16 13 C 0.52 9.53 7.58 -10.98 -0.08 9.44 16 14 O -0.52 -11.45 15.87 5.56 0.09 -11.36 16 15 C -0.06 -1.10 5.18 -29.03 -0.15 -1.25 16 16 C -0.18 -4.27 4.43 -103.92 -0.46 -4.73 16 17 C -0.08 -1.77 9.66 -39.66 -0.38 -2.15 16 18 C -0.24 -5.40 10.05 -39.29 -0.39 -5.80 16 19 C -0.11 -2.53 10.02 -39.66 -0.40 -2.93 16 20 C -0.16 -4.10 8.67 -38.87 -0.34 -4.44 16 21 C 0.13 3.38 5.56 -106.82 -0.59 2.78 16 22 C -0.46 -11.74 8.13 -37.74 -0.31 -12.05 16 23 H 0.07 1.82 6.70 -52.49 -0.35 1.47 16 24 C 0.08 1.89 5.21 -17.34 -0.09 1.80 16 25 N -0.80 -20.23 10.88 55.55 0.60 -19.62 16 26 Si 0.90 18.65 29.58 -169.99 -5.03 13.63 16 27 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 28 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 29 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 30 H 0.07 0.89 7.17 -51.93 -0.37 0.52 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.69 7.85 -51.93 -0.41 0.28 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.97 7.06 -51.93 -0.37 0.60 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.43 5.30 7.98 -182.59 -1.46 3.85 16 38 H 0.43 5.86 8.00 -182.60 -1.46 4.40 16 39 H 0.08 1.28 8.05 -51.93 -0.42 0.86 16 40 H 0.10 1.89 7.08 -51.93 -0.37 1.52 16 41 H 0.09 1.67 8.06 -52.48 -0.42 1.24 16 42 H 0.09 1.73 8.06 -52.48 -0.42 1.30 16 43 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 44 H 0.12 3.19 6.19 -52.49 -0.32 2.87 16 45 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 LS Contribution 373.71 15.07 5.63 5.63 Total: -1.00 -32.22 373.71 -10.32 -42.53 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -8.46 Total: 12.20 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -3.22 Total: -15.51 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.99 Total: -34.29 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.23 Total: -24.20 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.22 -10.32 -42.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843661000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.315 kcal (2) G-P(sol) polarization free energy of solvation -32.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds