Wall clock time and date at job start Tue Mar 31 2020 17:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.09006 * 110.42238 * 2 1 4 4 O 1.44786 * 110.48878 * 122.45599 * 2 1 3 5 5 C 1.44426 * 105.29684 * 159.32712 * 4 2 1 6 6 C 1.54483 * 104.80358 * 319.45448 * 5 4 2 7 7 C 1.54483 * 110.37500 * 237.69250 * 2 1 3 8 8 H 1.09001 * 110.50971 * 98.40845 * 7 2 1 9 9 C 1.50699 * 110.50830 * 335.83373 * 7 2 1 10 10 O 1.21280 * 120.00012 * 280.49583 * 9 7 2 11 11 N 1.34775 * 119.99862 * 100.50156 * 9 7 2 12 12 N 1.40100 * 119.99971 * 180.02562 * 11 9 7 13 13 C 1.34775 * 119.99971 * 179.97438 * 12 11 9 14 14 O 1.21280 * 120.00126 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.00187 * 179.97438 * 13 12 11 16 16 C 1.50697 * 109.47480 * 179.97438 * 15 13 12 17 17 C 1.37632 * 120.12923 * 265.00357 * 16 15 13 18 18 C 1.38615 * 120.24873 * 180.02562 * 17 16 15 19 19 C 1.38651 * 120.50231 * 359.97438 * 18 17 16 20 20 C 1.37592 * 120.24832 * 0.02562 * 19 18 17 21 21 C 1.40696 * 120.12562 * 85.02015 * 16 15 13 22 22 C 1.41396 * 120.24555 * 0.02562 * 21 16 15 23 23 H 1.07998 * 120.00079 * 333.15260 * 22 21 16 24 24 C 1.39947 * 119.99824 * 153.15396 * 22 21 16 25 25 N 1.30825 * 120.00104 * 346.17611 * 24 22 21 26 26 Si 1.86806 * 119.99890 * 166.17615 * 24 22 21 27 27 H 1.48491 * 109.47372 * 59.99632 * 26 24 22 28 28 H 1.48496 * 109.47267 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.46783 * 299.99678 * 26 24 22 30 30 H 1.09001 * 109.47555 * 188.11353 * 1 2 3 31 31 H 1.09004 * 109.47300 * 308.11262 * 1 2 3 32 32 H 1.09004 * 109.47253 * 68.11564 * 1 2 3 33 33 H 1.08999 * 110.37230 * 200.62208 * 5 4 2 34 34 H 1.09003 * 110.46703 * 78.33446 * 5 4 2 35 35 H 1.09002 * 110.51360 * 265.33379 * 6 5 4 36 36 H 1.08997 * 110.50915 * 142.62223 * 6 5 4 37 37 H 0.97003 * 120.00049 * 359.97438 * 11 9 7 38 38 H 0.97003 * 119.99801 * 359.97438 * 12 11 9 39 39 H 1.09003 * 109.46915 * 59.99311 * 15 13 12 40 40 H 1.09005 * 109.46757 * 300.00223 * 15 13 12 41 41 H 1.08004 * 119.87867 * 359.74216 * 17 16 15 42 42 H 1.08003 * 119.74771 * 179.97438 * 18 17 16 43 43 H 1.07997 * 119.87646 * 180.02562 * 19 18 17 44 44 H 1.08001 * 120.13115 * 180.02562 * 20 19 18 45 45 H 0.96999 * 119.99624 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 8 2.0367 -0.7278 1.1444 5 6 3.3910 -1.0895 0.7967 6 6 3.3193 -1.5055 -0.6893 7 6 2.0677 -0.7740 -1.2240 8 1 2.3406 -0.0840 -2.0224 9 6 1.0443 -1.7665 -1.7124 10 8 0.9092 -2.8284 -1.1423 11 7 0.2794 -1.4742 -2.7829 12 7 -0.6724 -2.3967 -3.2366 13 6 -1.4377 -2.1041 -4.3068 14 8 -1.3027 -1.0421 -4.8766 15 6 -2.4611 -3.0966 -4.7953 16 6 -3.1772 -2.5309 -5.9945 17 6 -4.3750 -1.8717 -5.8364 18 6 -5.0361 -1.3508 -6.9378 19 6 -4.5001 -1.4864 -8.2093 20 6 -3.3039 -2.1415 -8.3910 21 6 -2.6240 -2.6748 -7.2801 22 6 -1.3945 -3.3508 -7.4548 23 1 -0.6742 -3.3781 -6.6505 24 6 -1.1109 -3.9846 -8.6699 25 7 -2.0666 -4.1892 -9.5395 26 14 0.6322 -4.5383 -9.0500 27 1 1.0762 -5.5152 -8.0237 28 1 0.6675 -5.1770 -10.3902 29 1 1.5387 -3.3620 -9.0388 30 1 -0.3634 -1.0174 0.1450 31 1 -0.3634 0.6343 0.8086 32 1 -0.3634 0.3831 -0.9536 33 1 3.7295 -1.9255 1.4088 34 1 4.0572 -0.2356 0.9200 35 1 3.1978 -2.5851 -0.7784 36 1 4.2112 -1.1754 -1.2218 37 1 0.3874 -0.6247 -3.2387 38 1 -0.7805 -3.2460 -2.7806 39 1 -3.1821 -3.2952 -4.0022 40 1 -1.9626 -4.0251 -5.0739 41 1 -4.8038 -1.7638 -4.8510 42 1 -5.9757 -0.8353 -6.8044 43 1 -5.0235 -1.0762 -9.0603 44 1 -2.8879 -2.2457 -9.3822 45 1 -1.8701 -4.6288 -10.3816 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843661000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:14 Heat of formation + Delta-G solvation = -92.403046 kcal Electronic energy + Delta-G solvation = -28343.304005 eV Core-core repulsion = 24325.580763 eV Total energy + Delta-G solvation = -4017.723241 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.88503 -40.79428 -39.49724 -38.90997 -36.33100 -35.49319 -34.00950 -33.52146 -32.52061 -31.84592 -31.30454 -28.50596 -27.36691 -26.77754 -23.87256 -23.06990 -22.83339 -22.68764 -21.65235 -20.59719 -19.14218 -18.93474 -18.62110 -17.61372 -17.28263 -17.05333 -16.57119 -16.47901 -16.39187 -16.22741 -15.82263 -15.49141 -15.16384 -14.98460 -14.79657 -14.36840 -13.99385 -13.57614 -13.47078 -13.37589 -13.29797 -13.01707 -12.91431 -12.85101 -12.75708 -12.50939 -12.42394 -12.22610 -12.12422 -12.03184 -11.96819 -11.33669 -11.31647 -11.22595 -11.04618 -10.96575 -10.69773 -9.41485 -9.20990 -9.17498 -8.57954 -6.30843 0.72001 1.05512 1.22161 1.24764 1.35804 1.45516 1.53573 1.75545 2.19318 2.78430 2.86927 2.95664 3.37009 3.53488 3.68548 3.82883 4.05398 4.09878 4.18461 4.29249 4.30737 4.37983 4.40999 4.45020 4.59070 4.60058 4.71974 4.79498 4.84848 4.89013 4.90579 5.04568 5.08415 5.13661 5.19789 5.38161 5.54912 5.61337 5.70530 5.78950 5.87023 6.04394 6.16536 6.22735 6.41879 6.51453 6.74222 6.87291 6.98986 7.11034 7.37389 8.37596 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014324 B = 0.003045 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.349052 B = 9192.979493 C =10677.748614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.089 3.911 3 H 0.117 0.883 4 O -0.395 6.395 5 C 0.045 3.955 6 C -0.140 4.140 7 C -0.133 4.133 8 H 0.141 0.859 9 C 0.525 3.475 10 O -0.570 6.570 11 N -0.518 5.518 12 N -0.529 5.529 13 C 0.523 3.477 14 O -0.561 6.561 15 C -0.060 4.060 16 C -0.187 4.187 17 C -0.088 4.088 18 C -0.241 4.241 19 C -0.116 4.116 20 C -0.191 4.191 21 C 0.097 3.903 22 C -0.483 4.483 23 H 0.071 0.929 24 C 0.036 3.964 25 N -0.828 5.828 26 Si 0.970 3.030 27 H -0.257 1.257 28 H -0.268 1.268 29 H -0.268 1.268 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.115 0.885 37 H 0.434 0.566 38 H 0.434 0.566 39 H 0.120 0.880 40 H 0.103 0.897 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.105 0.895 44 H 0.098 0.902 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.275 6.074 15.891 19.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.031 3.969 3 H 0.135 0.865 4 O -0.315 6.315 5 C -0.032 4.032 6 C -0.178 4.178 7 C -0.156 4.156 8 H 0.159 0.841 9 C 0.313 3.687 10 O -0.448 6.448 11 N -0.265 5.265 12 N -0.279 5.279 13 C 0.312 3.688 14 O -0.436 6.436 15 C -0.101 4.101 16 C -0.189 4.189 17 C -0.107 4.107 18 C -0.260 4.260 19 C -0.135 4.135 20 C -0.210 4.210 21 C 0.095 3.905 22 C -0.513 4.513 23 H 0.090 0.910 24 C -0.178 4.178 25 N -0.454 5.454 26 Si 0.791 3.209 27 H -0.182 1.182 28 H -0.192 1.192 29 H -0.193 1.193 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.134 0.866 37 H 0.277 0.723 38 H 0.277 0.723 39 H 0.138 0.862 40 H 0.121 0.879 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.123 0.877 44 H 0.116 0.884 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.098 5.909 15.843 19.694 hybrid contribution 0.486 -0.452 -0.934 1.146 sum 10.584 5.457 14.909 19.080 Atomic orbital electron populations 1.21968 0.93776 1.02248 1.03691 1.23125 0.95090 0.96167 0.82522 0.86504 1.89223 1.28714 1.74941 1.38633 1.23575 0.83869 1.01235 0.94479 1.23001 0.96583 1.01222 0.96965 1.22902 0.94213 0.97170 1.01280 0.84140 1.21116 0.81272 0.88481 0.77878 1.90707 1.69974 1.26701 1.57385 1.45181 1.33061 1.17229 1.31071 1.45168 1.33520 1.17473 1.31728 1.21502 0.81095 0.88686 0.77543 1.90682 1.69426 1.26730 1.56782 1.20222 0.95877 0.97161 0.96847 1.19420 0.97171 1.08814 0.93504 1.20753 0.94900 0.97099 0.97905 1.20736 1.02458 1.10005 0.92764 1.20966 0.96159 0.99357 0.96979 1.21344 0.97692 1.02874 0.99139 1.17718 0.92414 0.89051 0.91295 1.19604 1.01958 1.30298 0.99402 0.91039 1.26632 1.02043 0.94033 0.95083 1.69864 1.34840 1.32361 1.08350 0.85436 0.77870 0.78978 0.78577 1.18159 1.19214 1.19313 0.94008 0.90242 0.90215 0.88739 0.89241 0.91441 0.86620 0.72303 0.72274 0.86226 0.87936 0.86317 0.86644 0.87706 0.88388 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 8.56 71.98 0.62 -2.33 16 2 C 0.09 1.41 3.85 31.09 0.12 1.53 16 3 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 4 O -0.40 -8.19 11.36 -148.98 -1.69 -9.89 16 5 C 0.04 0.62 7.63 72.49 0.55 1.17 16 6 C -0.14 -2.01 6.59 31.61 0.21 -1.80 16 7 C -0.13 -2.10 3.42 -10.52 -0.04 -2.13 16 8 H 0.14 1.29 8.11 -2.39 -0.02 1.27 16 9 C 0.52 12.65 4.89 87.66 0.43 13.08 16 10 O -0.57 -17.81 15.58 -3.03 -0.05 -17.86 16 11 N -0.52 -13.16 6.06 -173.54 -1.05 -14.21 16 12 N -0.53 -15.50 6.26 -173.53 -1.09 -16.58 16 13 C 0.52 18.92 7.58 87.66 0.66 19.58 16 14 O -0.56 -24.57 15.87 -3.03 -0.05 -24.62 16 15 C -0.06 -2.19 5.18 29.10 0.15 -2.04 16 16 C -0.19 -8.62 4.43 -19.41 -0.09 -8.70 16 17 C -0.09 -3.81 9.66 22.22 0.21 -3.59 16 18 C -0.24 -10.57 10.05 22.46 0.23 -10.34 16 19 C -0.12 -5.57 10.02 22.22 0.22 -5.35 16 20 C -0.19 -10.32 8.67 22.73 0.20 -10.12 16 21 C 0.10 5.19 5.56 -21.29 -0.12 5.07 16 22 C -0.48 -25.43 8.13 23.46 0.19 -25.24 16 23 H 0.07 3.64 6.70 -2.91 -0.02 3.62 16 24 C 0.04 1.83 5.21 85.26 0.44 2.28 16 25 N -0.83 -43.40 10.88 21.83 0.24 -43.16 16 26 Si 0.97 38.67 29.58 68.60 2.03 40.70 16 27 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 28 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 29 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 30 H 0.04 1.02 7.17 -2.39 -0.02 1.00 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.35 7.85 -2.39 -0.02 1.33 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 1.34 7.06 -2.39 -0.02 1.32 16 36 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.43 10.13 7.98 -213.32 -1.70 8.43 16 38 H 0.43 11.55 8.00 -213.32 -1.71 9.85 16 39 H 0.12 3.39 8.05 -2.39 -0.02 3.37 16 40 H 0.10 3.74 7.08 -2.38 -0.02 3.72 16 41 H 0.12 4.25 8.06 -2.91 -0.02 4.22 16 42 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16 43 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 44 H 0.10 5.57 6.19 -2.91 -0.02 5.55 16 45 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 Total: -1.00 -72.48 373.71 -0.03 -72.51 By element: Atomic # 1 Polarization: 44.42 SS G_CDS: -2.37 Total: 42.05 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 4.00 Total: -28.94 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -1.90 Total: -73.96 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -1.79 Total: -52.36 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -72.48 -0.03 -72.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843661000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.892 kcal (2) G-P(sol) polarization free energy of solvation -72.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds