Wall clock time and date at job start Tue Mar 31 2020 17:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.42243 * 2 1 4 4 O 1.44431 * 110.37325 * 237.68983 * 2 1 3 5 5 C 1.44424 * 105.27628 * 200.65829 * 4 2 1 6 6 C 1.54483 * 104.80319 * 40.50935 * 5 4 2 7 7 C 1.54475 * 110.37365 * 122.30752 * 2 1 3 8 8 H 1.08997 * 110.51431 * 261.45346 * 7 2 1 9 9 C 1.50701 * 110.62620 * 24.10589 * 7 2 1 10 10 O 1.21283 * 120.00032 * 79.49593 * 9 7 2 11 11 N 1.34775 * 120.00457 * 259.49093 * 9 7 2 12 12 N 1.40096 * 120.00625 * 180.02562 * 11 9 7 13 13 C 1.34770 * 120.00270 * 180.02562 * 12 11 9 14 14 O 1.21283 * 119.99866 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00102 * 179.97438 * 13 12 11 16 16 C 1.50694 * 109.47249 * 180.02562 * 15 13 12 17 17 C 1.37635 * 120.12827 * 264.72809 * 16 15 13 18 18 C 1.38619 * 120.25229 * 179.72122 * 17 16 15 19 19 C 1.38660 * 120.49773 * 0.55526 * 18 17 16 20 20 C 1.37608 * 120.24743 * 359.72178 * 19 18 17 21 21 C 1.40705 * 120.13026 * 84.99987 * 16 15 13 22 22 C 1.41399 * 120.24203 * 359.97438 * 21 16 15 23 23 H 1.08003 * 120.00058 * 334.05831 * 22 21 16 24 24 C 1.39942 * 119.99692 * 154.05014 * 22 21 16 25 25 N 1.30826 * 120.00053 * 345.07376 * 24 22 21 26 26 Si 1.86797 * 119.99785 * 165.06865 * 24 22 21 27 27 H 1.48506 * 109.47273 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.47158 * 120.00106 * 26 24 22 29 29 H 1.48497 * 109.47393 * 240.00222 * 26 24 22 30 30 H 1.08998 * 109.47608 * 176.23858 * 1 2 3 31 31 H 1.09009 * 109.46901 * 296.24010 * 1 2 3 32 32 H 1.09000 * 109.46955 * 56.23654 * 1 2 3 33 33 H 1.08996 * 110.37006 * 159.34075 * 5 4 2 34 34 H 1.08999 * 110.36977 * 281.57128 * 5 4 2 35 35 H 1.08997 * 110.50928 * 94.66753 * 6 5 4 36 36 H 1.09000 * 110.50844 * 217.37774 * 6 5 4 37 37 H 0.97003 * 119.99541 * 0.02562 * 11 9 7 38 38 H 0.97003 * 119.99834 * 359.97438 * 12 11 9 39 39 H 1.09005 * 109.47049 * 300.00226 * 15 13 12 40 40 H 1.08997 * 109.47270 * 59.99716 * 15 13 12 41 41 H 1.08000 * 119.87729 * 359.97438 * 17 16 15 42 42 H 1.07994 * 119.75547 * 180.25408 * 18 17 16 43 43 H 1.07999 * 119.88001 * 179.74301 * 19 18 17 44 44 H 1.08001 * 120.12431 * 180.02562 * 20 19 18 45 45 H 0.97005 * 119.99341 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0328 -0.7237 -1.1443 5 6 3.3873 -1.0872 -0.7995 6 6 3.3178 -1.5057 0.6859 7 6 2.0678 -0.7740 1.2239 8 1 2.3430 -0.0839 2.0215 9 6 1.0457 -1.7664 1.7155 10 8 0.9097 -2.8289 1.1468 11 7 0.2828 -1.4733 2.7872 12 7 -0.6670 -2.3960 3.2445 13 6 -1.4302 -2.1027 4.3158 14 8 -1.2951 -1.0396 4.8837 15 6 -2.4523 -3.0951 4.8074 16 6 -3.1661 -2.5283 6.0074 17 6 -2.7402 -2.8442 7.2775 18 6 -3.3914 -2.3197 8.3831 19 6 -4.4844 -1.4815 8.2240 20 6 -4.9312 -1.1566 6.9636 21 6 -4.2742 -1.6787 5.8339 22 6 -4.7240 -1.3514 4.5339 23 1 -4.0356 -1.3764 3.7021 24 6 -6.0612 -0.9952 4.3253 25 7 -6.9552 -1.2405 5.2484 26 14 -6.5694 -0.1694 2.7287 27 1 -5.3795 -0.0052 1.8556 28 1 -7.5788 -1.0101 2.0360 29 1 -7.1542 1.1631 3.0249 30 1 -0.3634 -1.0254 -0.0674 31 1 -0.3633 0.4544 0.9218 32 1 -0.3633 0.5711 -0.8543 33 1 3.7241 -1.9223 -1.4137 34 1 4.0528 -0.2329 -0.9240 35 1 3.1955 -2.5853 0.7732 36 1 4.2109 -1.1773 1.2174 37 1 0.3913 -0.6233 3.2419 38 1 -0.7758 -3.2458 2.7896 39 1 -3.1748 -3.2947 4.0160 40 1 -1.9530 -4.0231 5.0859 41 1 -1.8928 -3.4999 7.4133 42 1 -3.0478 -2.5696 9.3760 43 1 -4.9869 -1.0818 9.0924 44 1 -5.7825 -0.5033 6.8420 45 1 -7.8820 -0.9932 5.1037 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843661007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:20 Heat of formation + Delta-G solvation = -70.865767 kcal Electronic energy + Delta-G solvation = -28438.863825 eV Core-core repulsion = 24422.074510 eV Total energy + Delta-G solvation = -4016.789315 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.92532 -39.49652 -38.32775 -37.31474 -35.05162 -33.65543 -33.03669 -32.02914 -31.80849 -30.54800 -29.47317 -27.04608 -26.36721 -25.01423 -22.90005 -22.40493 -21.36508 -20.96174 -20.33532 -19.23924 -17.94994 -17.46672 -17.18420 -16.72635 -15.97921 -15.76733 -15.58447 -15.50749 -15.13433 -14.62382 -14.51059 -14.10665 -13.72507 -13.45205 -13.33079 -13.11035 -12.65133 -12.62088 -12.51441 -12.33562 -11.81730 -11.62467 -11.59506 -11.41747 -11.34896 -11.26200 -11.15389 -11.02637 -10.90049 -10.72951 -10.41180 -10.27910 -9.96866 -9.54069 -9.50400 -9.39046 -9.20692 -8.17570 -7.36054 -7.33468 -6.75968 -4.38881 1.94006 2.30169 2.77249 2.99555 3.06468 3.11176 3.14407 3.23988 3.55572 3.91592 3.95284 4.13771 4.36266 4.58560 4.64775 4.73548 4.81082 4.94222 5.03132 5.11049 5.27640 5.36487 5.44055 5.55111 5.67334 5.71267 5.74018 5.91432 5.99391 6.00321 6.24378 6.36341 6.47641 6.52755 6.72635 6.83334 6.87515 7.05445 7.26263 7.38517 7.59683 7.73039 7.88612 7.99652 8.02988 8.09871 8.27395 8.61200 8.69625 8.87804 8.97252 10.17496 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013683 B = 0.003214 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.883725 B = 8710.957878 C =10253.884015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.090 3.910 3 H 0.084 0.916 4 O -0.363 6.363 5 C 0.048 3.952 6 C -0.140 4.140 7 C -0.134 4.134 8 H 0.107 0.893 9 C 0.523 3.477 10 O -0.537 6.537 11 N -0.520 5.520 12 N -0.539 5.539 13 C 0.517 3.483 14 O -0.520 6.520 15 C -0.059 4.059 16 C -0.185 4.185 17 C -0.079 4.079 18 C -0.239 4.239 19 C -0.106 4.106 20 C -0.158 4.158 21 C 0.129 3.871 22 C -0.456 4.456 23 H 0.074 0.926 24 C 0.077 3.923 25 N -0.794 5.794 26 Si 0.903 3.097 27 H -0.262 1.262 28 H -0.274 1.274 29 H -0.272 1.272 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.429 0.571 38 H 0.427 0.573 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.119 0.881 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.546 1.262 -8.703 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.032 3.968 3 H 0.102 0.898 4 O -0.282 6.282 5 C -0.029 4.029 6 C -0.178 4.178 7 C -0.158 4.158 8 H 0.125 0.875 9 C 0.309 3.691 10 O -0.413 6.413 11 N -0.266 5.266 12 N -0.291 5.291 13 C 0.305 3.695 14 O -0.392 6.392 15 C -0.100 4.100 16 C -0.187 4.187 17 C -0.097 4.097 18 C -0.259 4.259 19 C -0.124 4.124 20 C -0.178 4.178 21 C 0.127 3.873 22 C -0.485 4.485 23 H 0.092 0.908 24 C -0.141 4.141 25 N -0.420 5.420 26 Si 0.728 3.272 27 H -0.185 1.185 28 H -0.199 1.199 29 H -0.197 1.197 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.270 0.730 38 H 0.269 0.731 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.137 0.863 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 15.146 1.252 -8.827 17.576 hybrid contribution -0.202 0.499 -0.383 0.660 sum 14.945 1.750 -9.210 17.642 Atomic orbital electron populations 1.21995 0.92552 1.04068 1.03271 1.22880 0.95922 0.94831 0.83185 0.89848 1.89207 1.27036 1.74452 1.37478 1.23386 0.84719 0.99978 0.94816 1.22959 0.95812 1.02770 0.96300 1.22722 0.95258 0.97494 1.00278 0.87504 1.20344 0.81551 0.88350 0.78859 1.90723 1.69065 1.24972 1.56500 1.44969 1.33369 1.17469 1.30771 1.45480 1.34301 1.16729 1.32540 1.21807 0.80479 0.89638 0.77601 1.90697 1.67492 1.24828 1.56188 1.20210 0.95022 0.95518 0.99262 1.18967 1.02591 1.06047 0.91107 1.20311 0.97668 0.99038 0.92704 1.20319 1.01686 1.07625 0.96240 1.20704 0.96523 0.98679 0.96519 1.21342 1.02264 1.02977 0.91170 1.17348 0.89224 0.87404 0.93323 1.19515 0.94200 1.40397 0.94431 0.90771 1.25878 0.96598 0.93427 0.98178 1.69820 1.02973 1.35244 1.33934 0.86337 0.79303 0.79646 0.81929 1.18544 1.19934 1.19697 0.90981 0.90621 0.91052 0.88752 0.92072 0.88912 0.89667 0.72952 0.73146 0.87924 0.89897 0.89645 0.89595 0.89520 0.86316 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 8.63 37.16 0.32 -1.48 16 2 C 0.09 0.88 3.83 -25.96 -0.10 0.78 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 4 O -0.36 -4.22 11.34 -35.23 -0.40 -4.62 16 5 C 0.05 0.39 7.63 37.94 0.29 0.68 16 6 C -0.14 -1.14 6.59 -25.16 -0.17 -1.31 16 7 C -0.13 -1.23 3.42 -90.20 -0.31 -1.54 16 8 H 0.11 0.68 8.11 -51.93 -0.42 0.26 16 9 C 0.52 6.63 4.87 -10.99 -0.05 6.58 16 10 O -0.54 -8.47 15.54 5.56 0.09 -8.38 16 11 N -0.52 -6.93 6.26 31.22 0.20 -6.74 16 12 N -0.54 -8.16 6.26 31.22 0.20 -7.97 16 13 C 0.52 9.55 7.58 -10.99 -0.08 9.46 16 14 O -0.52 -11.47 15.87 5.56 0.09 -11.38 16 15 C -0.06 -1.10 5.18 -29.04 -0.15 -1.25 16 16 C -0.19 -4.29 4.43 -103.91 -0.46 -4.75 16 17 C -0.08 -1.76 9.66 -39.66 -0.38 -2.14 16 18 C -0.24 -5.43 10.05 -39.28 -0.39 -5.82 16 19 C -0.11 -2.52 10.02 -39.66 -0.40 -2.92 16 20 C -0.16 -4.14 8.68 -38.87 -0.34 -4.47 16 21 C 0.13 3.36 5.57 -106.82 -0.59 2.77 16 22 C -0.46 -11.69 8.15 -37.74 -0.31 -12.00 16 23 H 0.07 1.85 6.67 -52.48 -0.35 1.50 16 24 C 0.08 1.89 5.19 -17.34 -0.09 1.80 16 25 N -0.79 -20.16 10.89 55.55 0.60 -19.55 16 26 Si 0.90 18.66 29.58 -169.99 -5.03 13.64 16 27 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 28 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 29 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 30 H 0.07 0.99 6.91 -51.93 -0.36 0.63 16 31 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.92 7.05 -51.93 -0.37 0.56 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.43 5.33 7.98 -182.60 -1.46 3.87 16 38 H 0.43 5.87 8.00 -182.60 -1.46 4.41 16 39 H 0.10 1.88 7.06 -51.93 -0.37 1.52 16 40 H 0.08 1.27 8.05 -51.93 -0.42 0.86 16 41 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 43 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 44 H 0.12 3.20 6.16 -52.49 -0.32 2.87 16 45 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 LS Contribution 373.87 15.07 5.63 5.63 Total: -1.00 -32.27 373.87 -10.30 -42.58 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -8.46 Total: 12.41 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -3.22 Total: -15.62 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 1.00 Total: -34.26 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.23 Total: -24.38 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.27 -10.30 -42.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843661007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.289 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds