Wall clock time and date at job start Tue Mar 31 2020 17:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.42243 * 2 1 4 4 O 1.44431 * 110.37325 * 237.68983 * 2 1 3 5 5 C 1.44424 * 105.27628 * 200.65829 * 4 2 1 6 6 C 1.54483 * 104.80319 * 40.50935 * 5 4 2 7 7 C 1.54475 * 110.37365 * 122.30752 * 2 1 3 8 8 H 1.08997 * 110.51431 * 261.45346 * 7 2 1 9 9 C 1.50701 * 110.62620 * 24.10589 * 7 2 1 10 10 O 1.21283 * 120.00032 * 79.49593 * 9 7 2 11 11 N 1.34775 * 120.00457 * 259.49093 * 9 7 2 12 12 N 1.40096 * 120.00625 * 180.02562 * 11 9 7 13 13 C 1.34770 * 120.00270 * 180.02562 * 12 11 9 14 14 O 1.21283 * 119.99866 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00102 * 179.97438 * 13 12 11 16 16 C 1.50694 * 109.47249 * 180.02562 * 15 13 12 17 17 C 1.37635 * 120.12827 * 264.72809 * 16 15 13 18 18 C 1.38619 * 120.25229 * 179.72122 * 17 16 15 19 19 C 1.38660 * 120.49773 * 0.55526 * 18 17 16 20 20 C 1.37608 * 120.24743 * 359.72178 * 19 18 17 21 21 C 1.40705 * 120.13026 * 84.99987 * 16 15 13 22 22 C 1.41399 * 120.24203 * 359.97438 * 21 16 15 23 23 H 1.08003 * 120.00058 * 334.05831 * 22 21 16 24 24 C 1.39942 * 119.99692 * 154.05014 * 22 21 16 25 25 N 1.30826 * 120.00053 * 345.07376 * 24 22 21 26 26 Si 1.86797 * 119.99785 * 165.06865 * 24 22 21 27 27 H 1.48506 * 109.47273 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.47158 * 120.00106 * 26 24 22 29 29 H 1.48497 * 109.47393 * 240.00222 * 26 24 22 30 30 H 1.08998 * 109.47608 * 176.23858 * 1 2 3 31 31 H 1.09009 * 109.46901 * 296.24010 * 1 2 3 32 32 H 1.09000 * 109.46955 * 56.23654 * 1 2 3 33 33 H 1.08996 * 110.37006 * 159.34075 * 5 4 2 34 34 H 1.08999 * 110.36977 * 281.57128 * 5 4 2 35 35 H 1.08997 * 110.50928 * 94.66753 * 6 5 4 36 36 H 1.09000 * 110.50844 * 217.37774 * 6 5 4 37 37 H 0.97003 * 119.99541 * 0.02562 * 11 9 7 38 38 H 0.97003 * 119.99834 * 359.97438 * 12 11 9 39 39 H 1.09005 * 109.47049 * 300.00226 * 15 13 12 40 40 H 1.08997 * 109.47270 * 59.99716 * 15 13 12 41 41 H 1.08000 * 119.87729 * 359.97438 * 17 16 15 42 42 H 1.07994 * 119.75547 * 180.25408 * 18 17 16 43 43 H 1.07999 * 119.88001 * 179.74301 * 19 18 17 44 44 H 1.08001 * 120.12431 * 180.02562 * 20 19 18 45 45 H 0.97005 * 119.99341 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0328 -0.7237 -1.1443 5 6 3.3873 -1.0872 -0.7995 6 6 3.3178 -1.5057 0.6859 7 6 2.0678 -0.7740 1.2239 8 1 2.3430 -0.0839 2.0215 9 6 1.0457 -1.7664 1.7155 10 8 0.9097 -2.8289 1.1468 11 7 0.2828 -1.4733 2.7872 12 7 -0.6670 -2.3960 3.2445 13 6 -1.4302 -2.1027 4.3158 14 8 -1.2951 -1.0396 4.8837 15 6 -2.4523 -3.0951 4.8074 16 6 -3.1661 -2.5283 6.0074 17 6 -2.7402 -2.8442 7.2775 18 6 -3.3914 -2.3197 8.3831 19 6 -4.4844 -1.4815 8.2240 20 6 -4.9312 -1.1566 6.9636 21 6 -4.2742 -1.6787 5.8339 22 6 -4.7240 -1.3514 4.5339 23 1 -4.0356 -1.3764 3.7021 24 6 -6.0612 -0.9952 4.3253 25 7 -6.9552 -1.2405 5.2484 26 14 -6.5694 -0.1694 2.7287 27 1 -5.3795 -0.0052 1.8556 28 1 -7.5788 -1.0101 2.0360 29 1 -7.1542 1.1631 3.0249 30 1 -0.3634 -1.0254 -0.0674 31 1 -0.3633 0.4544 0.9218 32 1 -0.3633 0.5711 -0.8543 33 1 3.7241 -1.9223 -1.4137 34 1 4.0528 -0.2329 -0.9240 35 1 3.1955 -2.5853 0.7732 36 1 4.2109 -1.1773 1.2174 37 1 0.3913 -0.6233 3.2419 38 1 -0.7758 -3.2458 2.7896 39 1 -3.1748 -3.2947 4.0160 40 1 -1.9530 -4.0231 5.0859 41 1 -1.8928 -3.4999 7.4133 42 1 -3.0478 -2.5696 9.3760 43 1 -4.9869 -1.0818 9.0924 44 1 -5.7825 -0.5033 6.8420 45 1 -7.8820 -0.9932 5.1037 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843661007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:18 Heat of formation + Delta-G solvation = -92.568465 kcal Electronic energy + Delta-G solvation = -28439.804925 eV Core-core repulsion = 24422.074510 eV Total energy + Delta-G solvation = -4017.730414 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.89434 -40.80234 -39.51265 -38.91633 -36.33014 -35.50111 -34.01003 -33.52403 -32.53584 -31.85176 -31.30605 -28.50728 -27.37168 -26.78116 -23.88414 -23.07205 -22.83522 -22.68801 -21.65431 -20.60030 -19.14689 -18.93725 -18.62447 -17.64417 -17.25941 -17.06243 -16.61707 -16.49662 -16.33439 -16.24253 -15.83102 -15.49579 -15.15575 -14.98009 -14.80820 -14.38597 -14.00543 -13.57890 -13.48481 -13.38004 -13.30364 -13.02082 -12.91536 -12.85770 -12.75266 -12.50905 -12.43133 -12.22677 -12.11976 -12.03823 -11.97230 -11.33721 -11.31269 -11.22038 -11.04870 -10.96395 -10.69868 -9.41489 -9.21701 -9.17677 -8.59302 -6.30464 0.72068 1.03931 1.22175 1.24722 1.35845 1.48044 1.51612 1.75613 2.18873 2.77573 2.87489 2.95659 3.36948 3.53331 3.68303 3.82953 4.05375 4.09895 4.17791 4.29058 4.29441 4.38078 4.40887 4.44824 4.57463 4.60096 4.72112 4.79534 4.83611 4.88881 4.89684 5.04568 5.08377 5.12449 5.19904 5.38318 5.54978 5.61552 5.70612 5.78898 5.87843 6.04491 6.16725 6.22973 6.41716 6.51508 6.74427 6.87397 6.98941 7.11026 7.37433 8.36557 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013683 B = 0.003214 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.883725 B = 8710.957878 C =10253.884015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.089 3.911 3 H 0.117 0.883 4 O -0.396 6.396 5 C 0.043 3.957 6 C -0.137 4.137 7 C -0.132 4.132 8 H 0.143 0.857 9 C 0.525 3.475 10 O -0.570 6.570 11 N -0.518 5.518 12 N -0.529 5.529 13 C 0.523 3.477 14 O -0.561 6.561 15 C -0.060 4.060 16 C -0.188 4.188 17 C -0.088 4.088 18 C -0.241 4.241 19 C -0.116 4.116 20 C -0.192 4.192 21 C 0.097 3.903 22 C -0.481 4.481 23 H 0.071 0.929 24 C 0.037 3.963 25 N -0.826 5.826 26 Si 0.969 3.031 27 H -0.264 1.264 28 H -0.264 1.264 29 H -0.268 1.268 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.119 0.881 37 H 0.434 0.566 38 H 0.434 0.566 39 H 0.102 0.898 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.105 0.895 44 H 0.098 0.902 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.898 1.567 -9.225 20.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 H 0.135 0.865 4 O -0.316 6.316 5 C -0.033 4.033 6 C -0.175 4.175 7 C -0.155 4.155 8 H 0.161 0.839 9 C 0.313 3.687 10 O -0.448 6.448 11 N -0.265 5.265 12 N -0.279 5.279 13 C 0.312 3.688 14 O -0.436 6.436 15 C -0.101 4.101 16 C -0.190 4.190 17 C -0.106 4.106 18 C -0.260 4.260 19 C -0.134 4.134 20 C -0.212 4.212 21 C 0.095 3.905 22 C -0.511 4.511 23 H 0.089 0.911 24 C -0.177 4.177 25 N -0.452 5.452 26 Si 0.791 3.209 27 H -0.188 1.188 28 H -0.188 1.188 29 H -0.193 1.193 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.137 0.863 37 H 0.277 0.723 38 H 0.277 0.723 39 H 0.120 0.880 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.123 0.877 44 H 0.116 0.884 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 17.518 1.531 -9.363 19.922 hybrid contribution -0.838 0.321 -0.193 0.918 sum 16.680 1.852 -9.556 19.313 Atomic orbital electron populations 1.21984 0.94273 1.01995 1.03666 1.23042 0.94660 0.96326 0.82826 0.86524 1.89174 1.28913 1.75023 1.38490 1.23609 0.83719 1.01253 0.94752 1.22993 0.96523 1.01267 0.96721 1.22896 0.94279 0.97174 1.01117 0.83894 1.21121 0.81354 0.88497 0.77772 1.90708 1.70040 1.26745 1.57317 1.45176 1.32889 1.17311 1.31156 1.45167 1.33992 1.17265 1.31481 1.21507 0.80535 0.88811 0.77988 1.90681 1.68894 1.26263 1.57782 1.20219 0.95250 0.96844 0.97789 1.19408 1.01661 1.04661 0.93261 1.20754 0.98429 0.99189 0.92239 1.20734 1.00821 1.06528 0.97966 1.20971 0.97168 0.98952 0.96327 1.21344 1.02884 1.04342 0.92614 1.17721 0.90687 0.88565 0.93502 1.19652 0.94858 1.42096 0.94454 0.91059 1.26616 0.96302 0.93541 1.01256 1.69880 1.03458 1.36176 1.35720 0.85352 0.78825 0.78735 0.78006 1.18771 1.18837 1.19253 0.94210 0.90306 0.90606 0.88698 0.89224 0.91252 0.86306 0.72312 0.72283 0.87994 0.86165 0.86289 0.86648 0.87718 0.88376 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 8.63 71.98 0.62 -2.86 16 2 C 0.09 1.53 3.83 31.09 0.12 1.65 16 3 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 4 O -0.40 -8.59 11.34 -148.98 -1.69 -10.28 16 5 C 0.04 0.60 7.63 72.49 0.55 1.15 16 6 C -0.14 -1.86 6.59 31.61 0.21 -1.65 16 7 C -0.13 -2.07 3.42 -10.52 -0.04 -2.11 16 8 H 0.14 1.23 8.11 -2.39 -0.02 1.21 16 9 C 0.52 12.68 4.87 87.66 0.43 13.11 16 10 O -0.57 -17.85 15.54 -3.04 -0.05 -17.90 16 11 N -0.52 -13.24 6.26 -173.53 -1.09 -14.32 16 12 N -0.53 -15.59 6.26 -173.54 -1.09 -16.67 16 13 C 0.52 18.99 7.58 87.66 0.66 19.65 16 14 O -0.56 -24.63 15.87 -3.04 -0.05 -24.68 16 15 C -0.06 -2.19 5.18 29.10 0.15 -2.04 16 16 C -0.19 -8.66 4.43 -19.41 -0.09 -8.74 16 17 C -0.09 -3.78 9.66 22.22 0.21 -3.57 16 18 C -0.24 -10.60 10.05 22.46 0.23 -10.37 16 19 C -0.12 -5.55 10.02 22.22 0.22 -5.33 16 20 C -0.19 -10.39 8.68 22.73 0.20 -10.19 16 21 C 0.10 5.19 5.57 -21.29 -0.12 5.07 16 22 C -0.48 -25.39 8.15 23.46 0.19 -25.19 16 23 H 0.07 3.66 6.67 -2.91 -0.02 3.64 16 24 C 0.04 1.88 5.19 85.26 0.44 2.32 16 25 N -0.83 -43.31 10.89 21.83 0.24 -43.07 16 26 Si 0.97 38.99 29.58 68.60 2.03 41.02 16 27 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 28 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 29 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 30 H 0.04 1.10 6.91 -2.39 -0.02 1.08 16 31 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 1.29 7.05 -2.39 -0.02 1.28 16 36 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.43 10.19 7.98 -213.32 -1.70 8.48 16 38 H 0.43 11.61 8.00 -213.32 -1.71 9.91 16 39 H 0.10 3.73 7.06 -2.38 -0.02 3.71 16 40 H 0.12 3.40 8.05 -2.39 -0.02 3.38 16 41 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 42 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 43 H 0.10 4.46 8.06 -2.91 -0.02 4.44 16 44 H 0.10 5.58 6.16 -2.91 -0.02 5.56 16 45 H 0.29 13.60 8.30 -92.70 -0.77 12.83 16 Total: -1.00 -72.87 373.87 -0.06 -72.94 By element: Atomic # 1 Polarization: 44.46 SS G_CDS: -2.37 Total: 42.09 kcal Atomic # 6 Polarization: -33.10 SS G_CDS: 4.00 Total: -29.11 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -1.93 Total: -74.07 kcal Atomic # 8 Polarization: -51.08 SS G_CDS: -1.79 Total: -52.86 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Total: -72.87 -0.06 -72.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843661007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.633 kcal (2) G-P(sol) polarization free energy of solvation -72.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds