Wall clock time and date at job start Tue Mar 31 2020 17:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.86767 * 2 1 4 4 O 1.43751 * 109.87885 * 121.00348 * 2 1 3 5 5 C 1.44728 * 106.78153 * 92.95339 * 4 2 1 6 6 C 1.54996 * 103.52247 * 40.08168 * 5 4 2 7 7 C 1.54094 * 109.87986 * 238.99387 * 2 1 3 8 8 H 1.09007 * 110.48736 * 1.27726 * 7 2 1 9 9 C 1.50691 * 110.48891 * 123.92821 * 7 2 1 10 10 O 1.21284 * 120.00298 * 0.02562 * 9 7 2 11 11 N 1.34779 * 119.99742 * 180.02562 * 9 7 2 12 12 N 1.40101 * 119.99730 * 180.02562 * 11 9 7 13 13 C 1.34774 * 120.00089 * 180.02562 * 12 11 9 14 14 O 1.21283 * 120.00239 * 359.97438 * 13 12 11 15 15 C 1.50703 * 120.00330 * 180.02562 * 13 12 11 16 16 C 1.50700 * 109.47433 * 179.97438 * 15 13 12 17 17 C 1.37638 * 120.12664 * 264.72511 * 16 15 13 18 18 C 1.38611 * 120.24592 * 179.74107 * 17 16 15 19 19 C 1.38650 * 120.50205 * 0.51449 * 18 17 16 20 20 C 1.37602 * 120.24968 * 359.76221 * 19 18 17 21 21 C 1.40699 * 120.12850 * 84.99660 * 16 15 13 22 22 C 1.41393 * 120.24330 * 0.02887 * 21 16 15 23 23 H 1.08002 * 120.00345 * 334.57755 * 22 21 16 24 24 C 1.39950 * 120.00273 * 154.58249 * 22 21 16 25 25 N 1.30823 * 119.99461 * 342.83436 * 24 22 21 26 26 Si 1.86799 * 120.00282 * 162.83450 * 24 22 21 27 27 H 1.48496 * 109.46694 * 94.64809 * 26 24 22 28 28 H 1.48495 * 109.47002 * 214.64732 * 26 24 22 29 29 H 1.48504 * 109.47015 * 334.65294 * 26 24 22 30 30 H 1.08997 * 109.47079 * 180.70331 * 1 2 3 31 31 H 1.09006 * 109.46955 * 300.69834 * 1 2 3 32 32 H 1.08999 * 109.47028 * 60.70027 * 1 2 3 33 33 H 1.08996 * 110.63643 * 281.55191 * 5 4 2 34 34 H 1.09004 * 110.70719 * 158.64341 * 5 4 2 35 35 H 1.08998 * 110.90543 * 204.74451 * 6 5 4 36 36 H 1.08995 * 110.93853 * 81.14643 * 6 5 4 37 37 H 0.96998 * 120.00668 * 359.97438 * 11 9 7 38 38 H 0.96999 * 120.00401 * 0.02562 * 12 11 9 39 39 H 1.09003 * 109.46610 * 299.99940 * 15 13 12 40 40 H 1.08997 * 109.47389 * 59.99420 * 15 13 12 41 41 H 1.07995 * 119.87540 * 359.97438 * 17 16 15 42 42 H 1.08000 * 119.74735 * 180.25861 * 18 17 16 43 43 H 1.08002 * 119.87444 * 179.74585 * 19 18 17 44 44 H 1.07999 * 120.12871 * 180.02562 * 20 19 18 45 45 H 0.97003 * 119.99568 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0189 -0.6963 1.1587 5 6 2.2281 -2.0723 0.7620 6 6 2.8325 -1.9516 -0.6602 7 6 2.0541 -0.7465 -1.2421 8 1 1.2238 -1.0906 -1.8588 9 6 2.9743 0.1399 -2.0409 10 8 3.2035 1.2705 -1.6665 11 7 3.5428 -0.3238 -3.1716 12 7 4.3989 0.5002 -3.9140 13 6 4.9669 0.0368 -5.0449 14 8 4.7375 -1.0937 -5.4197 15 6 5.8882 0.9228 -5.8433 16 6 6.3859 0.1715 -7.0511 17 6 7.5967 -0.4815 -7.0080 18 6 8.0544 -1.1777 -8.1158 19 6 7.3051 -1.2161 -9.2818 20 6 6.0943 -0.5659 -9.3494 21 6 5.6172 0.1397 -8.2291 22 6 4.3747 0.8120 -8.2871 23 1 3.8161 0.9937 -7.3808 24 6 3.8686 1.2422 -9.5190 25 7 4.6612 1.3338 -10.5557 26 14 2.0614 1.6855 -9.6829 27 1 1.8917 3.1487 -9.4950 28 1 1.5778 1.3003 -11.0330 29 1 1.2781 0.9598 -8.6508 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3633 0.5247 0.8837 32 1 -0.3633 0.5029 -0.8962 33 1 1.2814 -2.6117 0.7321 34 1 2.9284 -2.5656 1.4361 35 1 2.6432 -2.8541 -1.2412 36 1 3.9004 -1.7384 -0.6127 37 1 3.3599 -1.2281 -3.4709 38 1 4.5827 1.4041 -3.6141 39 1 5.3473 1.8125 -6.1657 40 1 6.7357 1.2172 -5.2244 41 1 8.1907 -0.4544 -6.1065 42 1 9.0037 -1.6907 -8.0717 43 1 7.6733 -1.7583 -10.1402 44 1 5.5120 -0.5975 -10.2584 45 1 4.3105 1.6323 -11.4094 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843661011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:24 Heat of formation + Delta-G solvation = -74.137590 kcal Electronic energy + Delta-G solvation = -28073.490130 eV Core-core repulsion = 24056.558939 eV Total energy + Delta-G solvation = -4016.931192 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.88243 -39.56110 -38.47420 -37.34619 -35.12961 -33.67573 -33.10139 -32.06271 -31.59458 -30.54827 -29.49784 -27.35678 -26.51742 -25.01753 -22.86519 -22.05370 -21.39255 -20.98141 -20.48675 -19.38078 -17.98086 -17.70374 -17.19558 -16.56277 -16.45891 -15.67441 -15.52233 -15.20381 -14.89491 -14.65722 -14.53597 -14.14037 -13.74695 -13.67807 -13.36479 -13.35608 -13.10103 -12.63118 -12.46635 -12.29724 -11.83118 -11.82181 -11.62504 -11.47866 -11.33917 -11.23043 -11.16681 -11.02652 -10.94867 -10.77162 -10.44521 -10.29048 -9.93926 -9.55451 -9.52568 -9.42388 -9.19139 -8.22583 -7.37343 -7.35826 -6.79430 -4.39583 1.88800 2.25703 2.76627 2.98022 3.04183 3.08803 3.12068 3.23306 3.50974 3.89684 3.90647 4.06306 4.35250 4.52283 4.61849 4.71557 4.76313 4.88352 5.06777 5.17970 5.19858 5.32480 5.33756 5.45764 5.57313 5.70006 5.78865 5.89860 5.90154 5.98530 6.23582 6.35086 6.46597 6.54541 6.70690 6.77673 6.82897 7.03475 7.24492 7.36924 7.57830 7.69052 7.87545 7.92726 8.00887 8.08727 8.25867 8.59147 8.66298 8.85868 8.95927 10.14680 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013997 B = 0.002909 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.917881 B = 9623.794490 C =11000.043856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.082 3.918 3 H 0.119 0.881 4 O -0.367 6.367 5 C 0.046 3.954 6 C -0.148 4.148 7 C -0.133 4.133 8 H 0.116 0.884 9 C 0.520 3.480 10 O -0.540 6.540 11 N -0.517 5.517 12 N -0.539 5.539 13 C 0.517 3.483 14 O -0.519 6.519 15 C -0.058 4.058 16 C -0.187 4.187 17 C -0.077 4.077 18 C -0.241 4.241 19 C -0.104 4.104 20 C -0.160 4.160 21 C 0.131 3.869 22 C -0.457 4.457 23 H 0.074 0.926 24 C 0.078 3.922 25 N -0.791 5.791 26 Si 0.902 3.098 27 H -0.270 1.270 28 H -0.275 1.275 29 H -0.262 1.262 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.430 0.570 38 H 0.428 0.572 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.117 0.883 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.355 -3.443 15.909 17.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.024 3.976 3 H 0.137 0.863 4 O -0.286 6.286 5 C -0.030 4.030 6 C -0.186 4.186 7 C -0.156 4.156 8 H 0.134 0.866 9 C 0.305 3.695 10 O -0.417 6.417 11 N -0.262 5.262 12 N -0.291 5.291 13 C 0.305 3.695 14 O -0.391 6.391 15 C -0.100 4.100 16 C -0.189 4.189 17 C -0.096 4.096 18 C -0.260 4.260 19 C -0.123 4.123 20 C -0.179 4.179 21 C 0.128 3.872 22 C -0.486 4.486 23 H 0.092 0.908 24 C -0.140 4.140 25 N -0.416 5.416 26 Si 0.726 3.274 27 H -0.195 1.195 28 H -0.200 1.200 29 H -0.186 1.186 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.272 0.728 38 H 0.269 0.731 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.135 0.865 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.313 -3.303 15.821 17.351 hybrid contribution -0.901 0.024 -0.540 1.051 sum -7.214 -3.278 15.281 17.213 Atomic orbital electron populations 1.22290 0.94940 1.02509 1.03025 1.22777 0.93967 0.98350 0.82500 0.86325 1.89034 1.86126 1.20552 1.32884 1.23603 1.00028 0.84797 0.94608 1.23209 1.01102 0.97145 0.97187 1.22707 0.98577 0.96260 0.98028 0.86572 1.20415 0.81044 0.88265 0.79741 1.90706 1.62496 1.19413 1.69051 1.44823 1.44103 1.15071 1.22198 1.45511 1.45345 1.14713 1.23541 1.21846 0.80320 0.89334 0.78037 1.90699 1.60976 1.19675 1.67770 1.20210 0.96871 0.98198 0.94677 1.18951 0.96553 1.08307 0.95081 1.20311 0.95481 0.97376 0.96415 1.20307 1.01164 1.09289 0.95237 1.20691 0.95890 0.99568 0.96147 1.21289 0.96583 1.00027 1.00013 1.17329 0.91279 0.88487 0.90090 1.19473 1.03372 1.32423 0.93380 0.90809 1.25883 0.99357 0.93387 0.95378 1.69822 1.36224 1.33675 1.01916 0.86398 0.82887 0.79326 0.78755 1.19516 1.19957 1.18580 0.92274 0.91367 0.91263 0.91723 0.88555 0.88842 0.89658 0.72809 0.73086 0.87911 0.89850 0.89632 0.89584 0.89517 0.86529 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 9.30 37.16 0.35 -0.98 16 2 C 0.08 0.81 3.69 -26.16 -0.10 0.72 16 3 H 0.12 1.42 6.44 -51.93 -0.33 1.08 16 4 O -0.37 -3.93 11.22 -35.23 -0.40 -4.32 16 5 C 0.05 0.34 7.67 38.21 0.29 0.63 16 6 C -0.15 -1.11 6.69 -24.72 -0.17 -1.27 16 7 C -0.13 -1.19 3.07 -90.25 -0.28 -1.47 16 8 H 0.12 0.81 7.70 -51.92 -0.40 0.41 16 9 C 0.52 6.47 7.13 -10.99 -0.08 6.39 16 10 O -0.54 -8.31 15.10 5.55 0.08 -8.22 16 11 N -0.52 -6.85 6.25 31.22 0.20 -6.66 16 12 N -0.54 -8.13 6.26 31.22 0.20 -7.94 16 13 C 0.52 9.52 7.58 -10.98 -0.08 9.44 16 14 O -0.52 -11.44 15.87 5.56 0.09 -11.36 16 15 C -0.06 -1.09 5.18 -29.03 -0.15 -1.24 16 16 C -0.19 -4.32 4.43 -103.91 -0.46 -4.78 16 17 C -0.08 -1.73 9.66 -39.66 -0.38 -2.11 16 18 C -0.24 -5.45 10.05 -39.29 -0.39 -5.84 16 19 C -0.10 -2.48 10.02 -39.66 -0.40 -2.88 16 20 C -0.16 -4.16 8.69 -38.87 -0.34 -4.50 16 21 C 0.13 3.39 5.57 -106.83 -0.59 2.79 16 22 C -0.46 -11.69 8.15 -37.74 -0.31 -12.00 16 23 H 0.07 1.83 6.66 -52.49 -0.35 1.48 16 24 C 0.08 1.92 5.15 -17.34 -0.09 1.83 16 25 N -0.79 -20.00 10.98 55.55 0.61 -19.39 16 26 Si 0.90 18.52 29.59 -169.99 -5.03 13.49 16 27 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 28 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 29 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 30 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.38 8.12 -51.93 -0.42 -0.04 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.73 7.86 -51.93 -0.41 0.32 16 37 H 0.43 5.32 8.00 -182.60 -1.46 3.86 16 38 H 0.43 5.80 8.00 -182.60 -1.46 4.34 16 39 H 0.10 1.87 7.05 -51.93 -0.37 1.51 16 40 H 0.08 1.27 8.05 -51.93 -0.42 0.86 16 41 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 43 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 44 H 0.12 3.13 6.21 -52.49 -0.33 2.80 16 45 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 LS Contribution 375.87 15.07 5.66 5.66 Total: -1.00 -31.85 375.87 -10.23 -42.08 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -8.46 Total: 11.92 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -3.18 Total: -15.27 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 1.00 Total: -33.98 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.22 Total: -23.90 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.85 -10.23 -42.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843661011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.060 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds