Wall clock time and date at job start Tue Mar 31 2020 17:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.86767 * 2 1 4 4 O 1.43751 * 109.87885 * 121.00348 * 2 1 3 5 5 C 1.44728 * 106.78153 * 92.95339 * 4 2 1 6 6 C 1.54996 * 103.52247 * 40.08168 * 5 4 2 7 7 C 1.54094 * 109.87986 * 238.99387 * 2 1 3 8 8 H 1.09007 * 110.48736 * 1.27726 * 7 2 1 9 9 C 1.50691 * 110.48891 * 123.92821 * 7 2 1 10 10 O 1.21284 * 120.00298 * 0.02562 * 9 7 2 11 11 N 1.34779 * 119.99742 * 180.02562 * 9 7 2 12 12 N 1.40101 * 119.99730 * 180.02562 * 11 9 7 13 13 C 1.34774 * 120.00089 * 180.02562 * 12 11 9 14 14 O 1.21283 * 120.00239 * 359.97438 * 13 12 11 15 15 C 1.50703 * 120.00330 * 180.02562 * 13 12 11 16 16 C 1.50700 * 109.47433 * 179.97438 * 15 13 12 17 17 C 1.37638 * 120.12664 * 264.72511 * 16 15 13 18 18 C 1.38611 * 120.24592 * 179.74107 * 17 16 15 19 19 C 1.38650 * 120.50205 * 0.51449 * 18 17 16 20 20 C 1.37602 * 120.24968 * 359.76221 * 19 18 17 21 21 C 1.40699 * 120.12850 * 84.99660 * 16 15 13 22 22 C 1.41393 * 120.24330 * 0.02887 * 21 16 15 23 23 H 1.08002 * 120.00345 * 334.57755 * 22 21 16 24 24 C 1.39950 * 120.00273 * 154.58249 * 22 21 16 25 25 N 1.30823 * 119.99461 * 342.83436 * 24 22 21 26 26 Si 1.86799 * 120.00282 * 162.83450 * 24 22 21 27 27 H 1.48496 * 109.46694 * 94.64809 * 26 24 22 28 28 H 1.48495 * 109.47002 * 214.64732 * 26 24 22 29 29 H 1.48504 * 109.47015 * 334.65294 * 26 24 22 30 30 H 1.08997 * 109.47079 * 180.70331 * 1 2 3 31 31 H 1.09006 * 109.46955 * 300.69834 * 1 2 3 32 32 H 1.08999 * 109.47028 * 60.70027 * 1 2 3 33 33 H 1.08996 * 110.63643 * 281.55191 * 5 4 2 34 34 H 1.09004 * 110.70719 * 158.64341 * 5 4 2 35 35 H 1.08998 * 110.90543 * 204.74451 * 6 5 4 36 36 H 1.08995 * 110.93853 * 81.14643 * 6 5 4 37 37 H 0.96998 * 120.00668 * 359.97438 * 11 9 7 38 38 H 0.96999 * 120.00401 * 0.02562 * 12 11 9 39 39 H 1.09003 * 109.46610 * 299.99940 * 15 13 12 40 40 H 1.08997 * 109.47389 * 59.99420 * 15 13 12 41 41 H 1.07995 * 119.87540 * 359.97438 * 17 16 15 42 42 H 1.08000 * 119.74735 * 180.25861 * 18 17 16 43 43 H 1.08002 * 119.87444 * 179.74585 * 19 18 17 44 44 H 1.07999 * 120.12871 * 180.02562 * 20 19 18 45 45 H 0.97003 * 119.99568 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0189 -0.6963 1.1587 5 6 2.2281 -2.0723 0.7620 6 6 2.8325 -1.9516 -0.6602 7 6 2.0541 -0.7465 -1.2421 8 1 1.2238 -1.0906 -1.8588 9 6 2.9743 0.1399 -2.0409 10 8 3.2035 1.2705 -1.6665 11 7 3.5428 -0.3238 -3.1716 12 7 4.3989 0.5002 -3.9140 13 6 4.9669 0.0368 -5.0449 14 8 4.7375 -1.0937 -5.4197 15 6 5.8882 0.9228 -5.8433 16 6 6.3859 0.1715 -7.0511 17 6 7.5967 -0.4815 -7.0080 18 6 8.0544 -1.1777 -8.1158 19 6 7.3051 -1.2161 -9.2818 20 6 6.0943 -0.5659 -9.3494 21 6 5.6172 0.1397 -8.2291 22 6 4.3747 0.8120 -8.2871 23 1 3.8161 0.9937 -7.3808 24 6 3.8686 1.2422 -9.5190 25 7 4.6612 1.3338 -10.5557 26 14 2.0614 1.6855 -9.6829 27 1 1.8917 3.1487 -9.4950 28 1 1.5778 1.3003 -11.0330 29 1 1.2781 0.9598 -8.6508 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3633 0.5247 0.8837 32 1 -0.3633 0.5029 -0.8962 33 1 1.2814 -2.6117 0.7321 34 1 2.9284 -2.5656 1.4361 35 1 2.6432 -2.8541 -1.2412 36 1 3.9004 -1.7384 -0.6127 37 1 3.3599 -1.2281 -3.4709 38 1 4.5827 1.4041 -3.6141 39 1 5.3473 1.8125 -6.1657 40 1 6.7357 1.2172 -5.2244 41 1 8.1907 -0.4544 -6.1065 42 1 9.0037 -1.6907 -8.0717 43 1 7.6733 -1.7583 -10.1402 44 1 5.5120 -0.5975 -10.2584 45 1 4.3105 1.6323 -11.4094 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843661011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:23 Heat of formation + Delta-G solvation = -95.061693 kcal Electronic energy + Delta-G solvation = -28074.397468 eV Core-core repulsion = 24056.558939 eV Total energy + Delta-G solvation = -4017.838529 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.84885 -40.81725 -39.62647 -38.97875 -36.39793 -35.50740 -34.03909 -33.53034 -32.33185 -31.73703 -31.31514 -28.58611 -27.65334 -26.78894 -23.72483 -22.88610 -22.77277 -22.66823 -21.66377 -20.78531 -19.14397 -18.91958 -18.88711 -17.60053 -17.27729 -17.24799 -16.66941 -16.47355 -16.29321 -15.98888 -15.63096 -15.45546 -15.13485 -14.94721 -14.82583 -14.37702 -14.29914 -13.75116 -13.56648 -13.38947 -13.20373 -12.92130 -12.89574 -12.85159 -12.74639 -12.52362 -12.47140 -12.34449 -12.13792 -11.98387 -11.88012 -11.37875 -11.32237 -11.23592 -11.02302 -10.96189 -10.63901 -9.45769 -9.23117 -9.18061 -8.61203 -6.29755 0.68536 1.04229 1.20315 1.21485 1.35944 1.46717 1.53386 1.73627 2.18890 2.76489 2.83518 2.93417 3.37206 3.47366 3.70749 3.78601 4.03340 4.08813 4.17051 4.25549 4.37449 4.40409 4.41979 4.57505 4.59987 4.65374 4.71648 4.79631 4.81683 4.89605 4.99379 5.04375 5.12900 5.19450 5.26547 5.37178 5.54468 5.57426 5.67603 5.78182 5.90153 6.04145 6.16006 6.22729 6.41340 6.47792 6.73695 6.81548 6.98332 7.10868 7.34017 8.35294 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013997 B = 0.002909 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.917881 B = 9623.794490 C =11000.043856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.080 3.920 3 H 0.090 0.910 4 O -0.393 6.393 5 C 0.042 3.958 6 C -0.145 4.145 7 C -0.126 4.126 8 H 0.144 0.856 9 C 0.522 3.478 10 O -0.571 6.571 11 N -0.515 5.515 12 N -0.529 5.529 13 C 0.523 3.477 14 O -0.560 6.560 15 C -0.060 4.060 16 C -0.190 4.190 17 C -0.087 4.087 18 C -0.243 4.243 19 C -0.115 4.115 20 C -0.194 4.194 21 C 0.099 3.901 22 C -0.483 4.483 23 H 0.072 0.928 24 C 0.038 3.962 25 N -0.823 5.823 26 Si 0.969 3.031 27 H -0.259 1.259 28 H -0.268 1.268 29 H -0.266 1.266 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.071 0.929 37 H 0.436 0.564 38 H 0.436 0.564 39 H 0.104 0.896 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.049 -4.122 17.481 19.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.022 3.978 3 H 0.108 0.892 4 O -0.313 6.313 5 C -0.033 4.033 6 C -0.182 4.182 7 C -0.149 4.149 8 H 0.162 0.838 9 C 0.310 3.690 10 O -0.449 6.449 11 N -0.262 5.262 12 N -0.280 5.280 13 C 0.312 3.688 14 O -0.436 6.436 15 C -0.100 4.100 16 C -0.192 4.192 17 C -0.105 4.105 18 C -0.262 4.262 19 C -0.133 4.133 20 C -0.214 4.214 21 C 0.096 3.904 22 C -0.512 4.512 23 H 0.090 0.910 24 C -0.177 4.177 25 N -0.449 5.449 26 Si 0.790 3.210 27 H -0.184 1.184 28 H -0.193 1.193 29 H -0.190 1.190 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.125 0.875 35 H 0.138 0.862 36 H 0.089 0.911 37 H 0.278 0.722 38 H 0.279 0.721 39 H 0.122 0.878 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.123 0.877 44 H 0.114 0.886 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.999 -3.963 17.420 19.187 hybrid contribution -0.575 0.215 -0.906 1.094 sum -7.574 -3.748 16.514 18.550 Atomic orbital electron populations 1.22247 0.93190 1.03649 1.03167 1.22732 0.95275 0.97071 0.82759 0.89169 1.89006 1.86436 1.22353 1.33463 1.23833 1.01458 0.83485 0.94570 1.23247 1.00009 0.97355 0.97634 1.22799 0.98654 0.95976 0.97466 0.83840 1.21113 0.80598 0.88222 0.79117 1.90699 1.63527 1.21023 1.69672 1.45007 1.43853 1.15108 1.22224 1.45194 1.44783 1.15157 1.22825 1.21552 0.80242 0.88524 0.78532 1.90684 1.62571 1.21289 1.69037 1.20221 0.98417 0.97524 0.93874 1.19400 0.96493 1.07624 0.95679 1.20752 0.95526 0.96629 0.97598 1.20720 1.01965 1.08836 0.94721 1.20958 0.95381 0.99403 0.97561 1.21297 0.97920 1.02193 0.99947 1.17708 0.92214 0.89163 0.91278 1.19629 1.04012 1.33616 0.93956 0.90951 1.26637 1.03191 0.93052 0.94808 1.69881 1.37970 1.34587 1.02498 0.85396 0.77594 0.79378 0.78624 1.18359 1.19259 1.19031 0.90565 0.91598 0.90821 0.89556 0.87506 0.86157 0.91055 0.72176 0.72127 0.87838 0.86146 0.86319 0.86690 0.87729 0.88569 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 9.30 71.98 0.67 -1.58 16 2 C 0.08 1.49 3.69 30.97 0.11 1.60 16 3 H 0.09 2.18 6.44 -2.39 -0.02 2.17 16 4 O -0.39 -7.91 11.22 -148.98 -1.67 -9.58 16 5 C 0.04 0.52 7.67 72.67 0.56 1.08 16 6 C -0.14 -1.80 6.69 31.90 0.21 -1.59 16 7 C -0.13 -2.01 3.07 -10.55 -0.03 -2.05 16 8 H 0.14 1.53 7.70 -2.38 -0.02 1.52 16 9 C 0.52 12.38 7.13 87.65 0.63 13.01 16 10 O -0.57 -17.34 15.10 -3.04 -0.05 -17.38 16 11 N -0.52 -12.99 6.25 -173.53 -1.08 -14.07 16 12 N -0.53 -15.34 6.26 -173.53 -1.09 -16.43 16 13 C 0.52 18.80 7.58 87.66 0.66 19.46 16 14 O -0.56 -24.50 15.87 -3.04 -0.05 -24.54 16 15 C -0.06 -2.14 5.18 29.10 0.15 -1.99 16 16 C -0.19 -8.70 4.43 -19.40 -0.09 -8.79 16 17 C -0.09 -3.73 9.66 22.22 0.21 -3.51 16 18 C -0.24 -10.66 10.05 22.46 0.23 -10.44 16 19 C -0.11 -5.48 10.02 22.22 0.22 -5.26 16 20 C -0.19 -10.44 8.69 22.73 0.20 -10.24 16 21 C 0.10 5.22 5.57 -21.29 -0.12 5.11 16 22 C -0.48 -25.26 8.15 23.46 0.19 -25.07 16 23 H 0.07 3.66 6.66 -2.91 -0.02 3.64 16 24 C 0.04 1.91 5.15 85.26 0.44 2.34 16 25 N -0.82 -42.85 10.98 21.83 0.24 -42.61 16 26 Si 0.97 38.38 29.59 68.60 2.03 40.41 16 27 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 28 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 29 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 30 H 0.08 0.78 8.12 -2.39 -0.02 0.76 16 31 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 0.70 8.12 -2.39 -0.02 0.68 16 34 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 1.10 7.86 -2.39 -0.02 1.09 16 37 H 0.44 10.12 8.00 -213.32 -1.71 8.41 16 38 H 0.44 11.30 8.00 -213.32 -1.71 9.59 16 39 H 0.10 3.72 7.05 -2.39 -0.02 3.70 16 40 H 0.12 3.36 8.05 -2.39 -0.02 3.34 16 41 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 42 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 43 H 0.10 4.45 8.06 -2.91 -0.02 4.42 16 44 H 0.10 5.43 6.21 -2.91 -0.02 5.42 16 45 H 0.29 13.53 8.30 -92.71 -0.77 12.76 16 Total: -1.00 -71.07 375.87 0.21 -70.86 By element: Atomic # 1 Polarization: 43.63 SS G_CDS: -2.37 Total: 41.25 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 4.25 Total: -27.92 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -1.93 Total: -73.11 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -1.77 Total: -51.50 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -71.07 0.21 -70.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843661011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.199 kcal (2) G-P(sol) polarization free energy of solvation -71.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds