Wall clock time and date at job start Tue Mar 31 2020 17:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 110.41692 * 2 1 4 4 O 1.44422 * 110.36635 * 237.69257 * 2 1 3 5 5 C 1.44432 * 105.27190 * 200.65363 * 4 2 1 6 6 C 1.54482 * 104.80228 * 40.51447 * 5 4 2 7 7 C 1.54472 * 110.37186 * 122.31154 * 2 1 3 8 8 H 1.08992 * 110.51654 * 24.16356 * 7 2 1 9 9 C 1.50702 * 110.63029 * 261.50699 * 7 2 1 10 10 O 1.21289 * 119.99525 * 3.84036 * 9 7 2 11 11 N 1.34770 * 120.00423 * 183.83775 * 9 7 2 12 12 N 1.40104 * 120.00011 * 180.02562 * 11 9 7 13 13 C 1.34774 * 119.99756 * 180.02562 * 12 11 9 14 14 O 1.21282 * 120.00267 * 359.97438 * 13 12 11 15 15 C 1.50705 * 119.99908 * 180.02562 * 13 12 11 16 16 C 1.50698 * 109.47321 * 179.97438 * 15 13 12 17 17 C 1.37640 * 120.12898 * 265.00385 * 16 15 13 18 18 C 1.38611 * 120.24666 * 179.97438 * 17 16 15 19 19 C 1.38657 * 120.50292 * 0.02562 * 18 17 16 20 20 C 1.37594 * 120.24867 * 0.03262 * 19 18 17 21 21 C 1.40704 * 120.12724 * 84.72411 * 16 15 13 22 22 C 1.41401 * 120.24048 * 359.97438 * 21 16 15 23 23 H 1.07997 * 120.00054 * 329.70080 * 22 21 16 24 24 C 1.39939 * 119.99675 * 149.70336 * 22 21 16 25 25 N 1.30821 * 120.00420 * 162.01476 * 24 22 21 26 26 Si 1.86804 * 120.00214 * 342.01355 * 24 22 21 27 27 H 1.48497 * 109.47297 * 95.39899 * 26 24 22 28 28 H 1.48493 * 109.47561 * 215.40162 * 26 24 22 29 29 H 1.48507 * 109.47133 * 335.40267 * 26 24 22 30 30 H 1.09005 * 109.46744 * 297.68834 * 1 2 3 31 31 H 1.08997 * 109.47422 * 57.68840 * 1 2 3 32 32 H 1.08997 * 109.46740 * 177.69082 * 1 2 3 33 33 H 1.09004 * 110.37076 * 281.67964 * 5 4 2 34 34 H 1.08999 * 110.37015 * 159.34541 * 5 4 2 35 35 H 1.08999 * 110.50497 * 217.37907 * 6 5 4 36 36 H 1.08992 * 110.51336 * 94.66516 * 6 5 4 37 37 H 0.97001 * 119.99976 * 0.02562 * 11 9 7 38 38 H 0.96993 * 120.00063 * 0.02562 * 12 11 9 39 39 H 1.08995 * 109.47130 * 299.99987 * 15 13 12 40 40 H 1.09004 * 109.47157 * 59.99638 * 15 13 12 41 41 H 1.07999 * 119.87591 * 359.97438 * 17 16 15 42 42 H 1.08002 * 119.74747 * 179.97438 * 18 17 16 43 43 H 1.07997 * 119.87674 * 179.97438 * 19 18 17 44 44 H 1.08003 * 120.12611 * 179.97438 * 20 19 18 45 45 H 0.96998 * 120.00418 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0327 -0.7236 -1.1443 5 6 3.3874 -1.0871 -0.7996 6 6 3.3179 -1.5057 0.6858 7 6 2.0678 -0.7740 1.2239 8 1 1.3277 -1.4919 1.5772 9 6 2.4479 0.1776 2.3289 10 8 2.2453 1.3666 2.2016 11 7 3.0129 -0.2926 3.4585 12 7 3.3658 0.5921 4.4860 13 6 3.9312 0.1220 5.6154 14 8 4.1342 -1.0669 5.7426 15 6 4.3103 1.0735 6.7209 16 6 4.9180 0.3005 7.8628 17 6 4.1344 -0.0981 8.9218 18 6 4.6908 -0.8098 9.9732 19 6 6.0404 -1.1278 9.9716 20 6 6.8430 -0.7385 8.9239 21 6 6.2876 -0.0218 7.8477 22 6 7.1011 0.3769 6.7620 23 1 6.6750 0.4711 5.7741 24 6 8.4582 0.6493 6.9676 25 7 9.2822 0.6715 5.9518 26 14 9.0933 0.9815 8.6927 27 1 9.6305 -0.2754 9.2730 28 1 10.1716 2.0008 8.6356 29 1 7.9824 1.4831 9.5411 30 1 -0.3633 0.4776 0.9100 31 1 -0.3634 0.5493 -0.8685 32 1 -0.3633 -1.0268 -0.0414 33 1 4.0525 -0.2323 -0.9223 34 1 3.7241 -1.9222 -1.4139 35 1 4.2110 -1.1772 1.2172 36 1 3.1956 -2.5852 0.7730 37 1 3.1752 -1.2435 3.5602 38 1 3.2031 1.5429 4.3845 39 1 5.0340 1.7969 6.3454 40 1 3.4206 1.5976 7.0702 41 1 3.0821 0.1445 8.9337 42 1 4.0685 -1.1182 10.8003 43 1 6.4634 -1.6823 10.7961 44 1 7.8941 -0.9870 8.9249 45 1 10.2228 0.8607 6.0943 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843661016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:29 Heat of formation + Delta-G solvation = -72.906164 kcal Electronic energy + Delta-G solvation = -28159.005872 eV Core-core repulsion = 24142.128079 eV Total energy + Delta-G solvation = -4016.877793 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.83934 -39.56044 -38.49556 -37.57403 -35.14528 -33.63507 -33.07805 -32.18257 -31.80934 -30.59655 -30.32811 -27.21444 -26.41823 -24.87328 -22.78403 -22.32488 -21.55853 -21.26814 -20.53154 -19.44732 -17.81743 -17.70775 -17.38301 -16.45104 -16.16905 -15.79908 -15.65137 -15.37132 -15.31292 -14.68874 -14.44613 -14.04428 -13.84945 -13.77433 -13.67602 -13.43830 -12.81302 -12.74129 -12.59329 -12.24052 -12.13930 -11.96122 -11.62862 -11.55977 -11.42616 -11.37750 -11.11807 -10.98293 -10.85142 -10.79031 -10.30996 -10.28774 -9.97083 -9.75786 -9.64523 -9.53765 -9.16291 -8.22572 -7.65416 -7.56361 -6.97805 -4.53018 1.87181 2.26404 2.57581 2.68610 3.09495 3.09877 3.19177 3.29737 3.51051 3.95372 4.00214 4.18853 4.30078 4.45598 4.57080 4.71641 4.89461 4.92558 5.09988 5.22857 5.27233 5.33290 5.46474 5.49116 5.59395 5.60663 5.74641 5.77856 5.83315 5.89155 6.03164 6.13852 6.20747 6.50704 6.52631 6.67340 6.77084 6.79684 6.90815 7.15872 7.37963 7.60522 7.66762 7.72451 7.85447 7.92853 8.09242 8.30971 8.62476 8.64013 8.77640 10.04166 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016831 B = 0.002795 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.182453 B =10015.832433 C =10982.861328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.088 3.912 3 H 0.090 0.910 4 O -0.370 6.370 5 C 0.047 3.953 6 C -0.153 4.153 7 C -0.133 4.133 8 H 0.116 0.884 9 C 0.520 3.480 10 O -0.542 6.542 11 N -0.516 5.516 12 N -0.538 5.538 13 C 0.518 3.482 14 O -0.519 6.519 15 C -0.062 4.062 16 C -0.172 4.172 17 C -0.065 4.065 18 C -0.243 4.243 19 C -0.078 4.078 20 C -0.233 4.233 21 C 0.111 3.889 22 C -0.445 4.445 23 H 0.088 0.912 24 C 0.085 3.915 25 N -0.807 5.807 26 Si 0.910 3.090 27 H -0.271 1.271 28 H -0.292 1.292 29 H -0.243 1.243 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.431 0.569 38 H 0.428 0.572 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.100 0.900 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.742 -0.859 -8.553 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.030 3.970 3 H 0.108 0.892 4 O -0.289 6.289 5 C -0.030 4.030 6 C -0.191 4.191 7 C -0.156 4.156 8 H 0.134 0.866 9 C 0.305 3.695 10 O -0.418 6.418 11 N -0.262 5.262 12 N -0.289 5.289 13 C 0.306 3.694 14 O -0.391 6.391 15 C -0.103 4.103 16 C -0.174 4.174 17 C -0.084 4.084 18 C -0.262 4.262 19 C -0.096 4.096 20 C -0.252 4.252 21 C 0.108 3.892 22 C -0.473 4.473 23 H 0.106 0.894 24 C -0.134 4.134 25 N -0.431 5.431 26 Si 0.737 3.263 27 H -0.197 1.197 28 H -0.219 1.219 29 H -0.166 1.166 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.272 0.728 38 H 0.269 0.731 39 H 0.125 0.875 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.117 0.883 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.596 -0.899 -8.895 14.642 hybrid contribution 0.712 -0.041 0.864 1.120 sum -10.885 -0.940 -8.031 13.559 Atomic orbital electron populations 1.21796 0.92589 1.02808 1.02999 1.22900 0.95671 0.96105 0.82335 0.89179 1.89147 1.27059 1.74761 1.37939 1.23401 0.84819 1.00418 0.94384 1.23058 0.97137 1.01764 0.97100 1.22710 1.00053 0.97961 0.94834 0.86581 1.20468 0.77589 0.89705 0.81703 1.90717 1.55036 1.16227 1.79846 1.44854 1.61811 1.08281 1.11260 1.45421 1.65335 1.07282 1.10873 1.21684 0.75632 0.90995 0.81098 1.90711 1.52208 1.16773 1.79440 1.20229 1.01294 0.96923 0.91841 1.18979 0.94713 1.07891 0.95810 1.20444 0.96912 0.96912 0.94110 1.20339 0.95164 1.10066 1.00644 1.20617 0.94049 0.98119 0.96820 1.21006 0.98727 1.07218 0.98226 1.17476 0.91514 0.88815 0.91428 1.19410 0.92406 1.39445 0.96041 0.89381 1.26163 0.96377 0.91661 0.99215 1.69698 1.05212 1.34616 1.33604 0.86334 0.78962 0.78385 0.82649 1.19733 1.21925 1.16607 0.90823 0.91461 0.91784 0.91793 0.88493 0.89497 0.89104 0.72750 0.73066 0.87511 0.89572 0.88967 0.88921 0.88934 0.88265 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.52 37.16 0.35 -0.89 16 2 C 0.09 0.90 3.25 -25.95 -0.08 0.82 16 3 H 0.09 1.07 6.97 -51.93 -0.36 0.71 16 4 O -0.37 -4.03 11.34 -35.23 -0.40 -4.43 16 5 C 0.05 0.41 7.63 37.93 0.29 0.70 16 6 C -0.15 -1.32 6.67 -25.16 -0.17 -1.48 16 7 C -0.13 -1.27 3.05 -90.20 -0.27 -1.54 16 8 H 0.12 0.89 7.87 -51.93 -0.41 0.48 16 9 C 0.52 6.52 7.10 -10.99 -0.08 6.45 16 10 O -0.54 -8.23 15.34 5.55 0.09 -8.15 16 11 N -0.52 -6.96 6.15 31.22 0.19 -6.77 16 12 N -0.54 -8.12 6.26 31.22 0.20 -7.93 16 13 C 0.52 9.48 7.54 -10.98 -0.08 9.40 16 14 O -0.52 -11.45 15.87 5.56 0.09 -11.36 16 15 C -0.06 -1.10 5.19 -29.03 -0.15 -1.26 16 16 C -0.17 -3.77 4.43 -103.91 -0.46 -4.23 16 17 C -0.07 -1.35 9.66 -39.66 -0.38 -1.73 16 18 C -0.24 -5.04 10.05 -39.29 -0.39 -5.44 16 19 C -0.08 -1.70 10.02 -39.66 -0.40 -2.10 16 20 C -0.23 -5.63 7.17 -38.88 -0.28 -5.91 16 21 C 0.11 2.74 5.10 -106.82 -0.54 2.19 16 22 C -0.44 -11.59 8.56 -37.74 -0.32 -11.91 16 23 H 0.09 2.41 6.99 -52.49 -0.37 2.04 16 24 C 0.08 2.17 5.41 -17.35 -0.09 2.08 16 25 N -0.81 -21.13 13.93 55.55 0.77 -20.36 16 26 Si 0.91 20.42 24.52 -169.99 -4.17 16.25 16 27 H -0.27 -5.99 6.71 56.52 0.38 -5.61 16 28 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 29 H -0.24 -5.53 6.85 56.52 0.39 -5.14 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.83 7.68 -51.93 -0.40 0.43 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.43 5.51 7.98 -182.59 -1.46 4.05 16 38 H 0.43 5.78 8.00 -182.60 -1.46 4.32 16 39 H 0.11 1.90 7.15 -51.93 -0.37 1.53 16 40 H 0.09 1.22 8.05 -51.93 -0.42 0.80 16 41 H 0.09 1.63 8.06 -52.49 -0.42 1.20 16 42 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.10 2.40 4.74 -52.48 -0.25 2.15 16 45 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -31.71 371.18 -9.18 -40.89 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -8.47 Total: 11.09 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -3.07 Total: -14.84 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 1.16 Total: -35.05 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.23 Total: -23.93 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.17 Total: 16.25 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.71 -9.18 -40.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843661016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.014 kcal (2) G-P(sol) polarization free energy of solvation -31.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds