Wall clock time and date at job start Tue Mar 31 2020 17:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 110.41692 * 2 1 4 4 O 1.44422 * 110.36635 * 237.69257 * 2 1 3 5 5 C 1.44432 * 105.27190 * 200.65363 * 4 2 1 6 6 C 1.54482 * 104.80228 * 40.51447 * 5 4 2 7 7 C 1.54472 * 110.37186 * 122.31154 * 2 1 3 8 8 H 1.08992 * 110.51654 * 24.16356 * 7 2 1 9 9 C 1.50702 * 110.63029 * 261.50699 * 7 2 1 10 10 O 1.21289 * 119.99525 * 3.84036 * 9 7 2 11 11 N 1.34770 * 120.00423 * 183.83775 * 9 7 2 12 12 N 1.40104 * 120.00011 * 180.02562 * 11 9 7 13 13 C 1.34774 * 119.99756 * 180.02562 * 12 11 9 14 14 O 1.21282 * 120.00267 * 359.97438 * 13 12 11 15 15 C 1.50705 * 119.99908 * 180.02562 * 13 12 11 16 16 C 1.50698 * 109.47321 * 179.97438 * 15 13 12 17 17 C 1.37640 * 120.12898 * 265.00385 * 16 15 13 18 18 C 1.38611 * 120.24666 * 179.97438 * 17 16 15 19 19 C 1.38657 * 120.50292 * 0.02562 * 18 17 16 20 20 C 1.37594 * 120.24867 * 0.03262 * 19 18 17 21 21 C 1.40704 * 120.12724 * 84.72411 * 16 15 13 22 22 C 1.41401 * 120.24048 * 359.97438 * 21 16 15 23 23 H 1.07997 * 120.00054 * 329.70080 * 22 21 16 24 24 C 1.39939 * 119.99675 * 149.70336 * 22 21 16 25 25 N 1.30821 * 120.00420 * 162.01476 * 24 22 21 26 26 Si 1.86804 * 120.00214 * 342.01355 * 24 22 21 27 27 H 1.48497 * 109.47297 * 95.39899 * 26 24 22 28 28 H 1.48493 * 109.47561 * 215.40162 * 26 24 22 29 29 H 1.48507 * 109.47133 * 335.40267 * 26 24 22 30 30 H 1.09005 * 109.46744 * 297.68834 * 1 2 3 31 31 H 1.08997 * 109.47422 * 57.68840 * 1 2 3 32 32 H 1.08997 * 109.46740 * 177.69082 * 1 2 3 33 33 H 1.09004 * 110.37076 * 281.67964 * 5 4 2 34 34 H 1.08999 * 110.37015 * 159.34541 * 5 4 2 35 35 H 1.08999 * 110.50497 * 217.37907 * 6 5 4 36 36 H 1.08992 * 110.51336 * 94.66516 * 6 5 4 37 37 H 0.97001 * 119.99976 * 0.02562 * 11 9 7 38 38 H 0.96993 * 120.00063 * 0.02562 * 12 11 9 39 39 H 1.08995 * 109.47130 * 299.99987 * 15 13 12 40 40 H 1.09004 * 109.47157 * 59.99638 * 15 13 12 41 41 H 1.07999 * 119.87591 * 359.97438 * 17 16 15 42 42 H 1.08002 * 119.74747 * 179.97438 * 18 17 16 43 43 H 1.07997 * 119.87674 * 179.97438 * 19 18 17 44 44 H 1.08003 * 120.12611 * 179.97438 * 20 19 18 45 45 H 0.96998 * 120.00418 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0327 -0.7236 -1.1443 5 6 3.3874 -1.0871 -0.7996 6 6 3.3179 -1.5057 0.6858 7 6 2.0678 -0.7740 1.2239 8 1 1.3277 -1.4919 1.5772 9 6 2.4479 0.1776 2.3289 10 8 2.2453 1.3666 2.2016 11 7 3.0129 -0.2926 3.4585 12 7 3.3658 0.5921 4.4860 13 6 3.9312 0.1220 5.6154 14 8 4.1342 -1.0669 5.7426 15 6 4.3103 1.0735 6.7209 16 6 4.9180 0.3005 7.8628 17 6 4.1344 -0.0981 8.9218 18 6 4.6908 -0.8098 9.9732 19 6 6.0404 -1.1278 9.9716 20 6 6.8430 -0.7385 8.9239 21 6 6.2876 -0.0218 7.8477 22 6 7.1011 0.3769 6.7620 23 1 6.6750 0.4711 5.7741 24 6 8.4582 0.6493 6.9676 25 7 9.2822 0.6715 5.9518 26 14 9.0933 0.9815 8.6927 27 1 9.6305 -0.2754 9.2730 28 1 10.1716 2.0008 8.6356 29 1 7.9824 1.4831 9.5411 30 1 -0.3633 0.4776 0.9100 31 1 -0.3634 0.5493 -0.8685 32 1 -0.3633 -1.0268 -0.0414 33 1 4.0525 -0.2323 -0.9223 34 1 3.7241 -1.9222 -1.4139 35 1 4.2110 -1.1772 1.2172 36 1 3.1956 -2.5852 0.7730 37 1 3.1752 -1.2435 3.5602 38 1 3.2031 1.5429 4.3845 39 1 5.0340 1.7969 6.3454 40 1 3.4206 1.5976 7.0702 41 1 3.0821 0.1445 8.9337 42 1 4.0685 -1.1182 10.8003 43 1 6.4634 -1.6823 10.7961 44 1 7.8941 -0.9870 8.9249 45 1 10.2228 0.8607 6.0943 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843661016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:27 Heat of formation + Delta-G solvation = -95.022903 kcal Electronic energy + Delta-G solvation = -28159.964926 eV Core-core repulsion = 24142.128079 eV Total energy + Delta-G solvation = -4017.836847 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.86721 -40.85759 -39.70060 -39.09640 -36.42599 -35.48425 -34.08496 -33.60240 -32.61213 -32.17971 -31.73038 -28.62179 -27.39322 -26.61300 -23.72492 -23.25762 -23.08637 -22.69687 -21.73495 -20.84187 -19.25336 -18.99764 -18.83829 -17.56158 -17.48078 -17.09945 -16.67826 -16.55389 -16.37107 -16.17207 -15.90169 -15.50657 -15.24554 -15.09923 -14.81268 -14.57066 -14.52956 -13.87081 -13.74382 -13.56375 -13.29120 -13.14997 -12.98290 -12.81063 -12.68819 -12.52129 -12.40581 -12.29980 -12.16791 -11.99658 -11.85625 -11.53239 -11.40639 -11.36067 -11.04742 -10.96427 -10.77878 -9.47588 -9.39221 -9.30532 -8.86457 -6.45039 0.60323 0.89286 0.99470 1.18036 1.28259 1.41964 1.50106 1.71521 2.13777 2.63819 2.70371 2.98749 3.39860 3.45662 3.54278 3.66196 3.93096 4.01056 4.13585 4.20006 4.27790 4.31424 4.36737 4.46868 4.56082 4.57229 4.65502 4.72729 4.78942 4.90006 4.93758 4.94229 4.96678 5.03855 5.17136 5.22489 5.37761 5.54702 5.60947 5.70569 5.77761 5.87735 5.96013 6.06173 6.29448 6.43349 6.48249 6.78566 6.79948 6.91510 7.31249 8.21147 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016831 B = 0.002795 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.182453 B =10015.832433 C =10982.861328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.085 3.915 3 H 0.068 0.932 4 O -0.381 6.381 5 C 0.041 3.959 6 C -0.150 4.150 7 C -0.125 4.125 8 H 0.144 0.856 9 C 0.524 3.476 10 O -0.568 6.568 11 N -0.517 5.517 12 N -0.528 5.528 13 C 0.522 3.478 14 O -0.562 6.562 15 C -0.064 4.064 16 C -0.173 4.173 17 C -0.074 4.074 18 C -0.230 4.230 19 C -0.089 4.089 20 C -0.256 4.256 21 C 0.085 3.915 22 C -0.469 4.469 23 H 0.059 0.941 24 C 0.049 3.951 25 N -0.852 5.852 26 Si 0.962 3.038 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.248 1.248 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.435 0.565 38 H 0.436 0.564 39 H 0.102 0.898 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.120 0.880 44 H 0.090 0.910 45 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.005 -1.515 -7.254 15.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.027 3.973 3 H 0.086 0.914 4 O -0.300 6.300 5 C -0.035 4.035 6 C -0.188 4.188 7 C -0.148 4.148 8 H 0.161 0.839 9 C 0.311 3.689 10 O -0.446 6.446 11 N -0.263 5.263 12 N -0.279 5.279 13 C 0.310 3.690 14 O -0.438 6.438 15 C -0.105 4.105 16 C -0.175 4.175 17 C -0.092 4.092 18 C -0.249 4.249 19 C -0.107 4.107 20 C -0.276 4.276 21 C 0.083 3.917 22 C -0.499 4.499 23 H 0.077 0.923 24 C -0.166 4.166 25 N -0.478 5.478 26 Si 0.786 3.214 27 H -0.194 1.194 28 H -0.208 1.208 29 H -0.172 1.172 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.136 0.864 35 H 0.093 0.907 36 H 0.133 0.867 37 H 0.277 0.723 38 H 0.279 0.721 39 H 0.120 0.880 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.138 0.862 44 H 0.108 0.892 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.875 -1.529 -7.616 15.902 hybrid contribution 1.199 0.134 0.478 1.298 sum -12.676 -1.395 -7.138 14.614 Atomic orbital electron populations 1.21791 0.91184 1.03756 1.03157 1.22892 0.96797 0.95059 0.82551 0.91444 1.89139 1.27878 1.74718 1.38312 1.23551 0.84015 1.00949 0.94997 1.23085 0.96064 1.03060 0.96549 1.22772 1.01114 0.97602 0.93286 0.83856 1.21055 0.76418 0.89812 0.81609 1.90709 1.56028 1.17645 1.80247 1.45035 1.62026 1.08257 1.11019 1.45163 1.64046 1.07967 1.10678 1.21570 0.75290 0.90265 0.81838 1.90688 1.54293 1.18385 1.80454 1.20289 1.02808 0.96453 0.90932 1.19427 0.93912 1.06948 0.97245 1.20919 0.98707 0.96262 0.93335 1.20883 0.94998 1.07821 1.01199 1.20988 0.94648 0.98131 0.96979 1.21146 0.98923 1.08173 0.99309 1.17716 0.92996 0.89540 0.91463 1.19331 0.93232 1.41912 0.95430 0.92334 1.26765 0.96405 0.91425 1.01970 1.69736 1.05773 1.37256 1.35068 0.85542 0.78396 0.78416 0.79047 1.19430 1.20768 1.17180 0.90751 0.91266 0.90401 0.92564 0.86387 0.90743 0.86707 0.72289 0.72093 0.88034 0.85192 0.85259 0.85386 0.86162 0.89211 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.52 71.98 0.69 -1.53 16 2 C 0.09 1.68 3.25 31.10 0.10 1.78 16 3 H 0.07 1.63 6.97 -2.39 -0.02 1.61 16 4 O -0.38 -7.85 11.34 -148.98 -1.69 -9.54 16 5 C 0.04 0.69 7.63 72.49 0.55 1.25 16 6 C -0.15 -2.38 6.67 31.61 0.21 -2.17 16 7 C -0.13 -2.21 3.05 -10.52 -0.03 -2.24 16 8 H 0.14 1.79 7.87 -2.39 -0.02 1.77 16 9 C 0.52 12.77 7.10 87.66 0.62 13.40 16 10 O -0.57 -17.14 15.34 -3.06 -0.05 -17.19 16 11 N -0.52 -13.61 6.15 -173.53 -1.07 -14.68 16 12 N -0.53 -15.70 6.26 -173.53 -1.09 -16.78 16 13 C 0.52 18.91 7.54 87.66 0.66 19.57 16 14 O -0.56 -24.87 15.87 -3.03 -0.05 -24.91 16 15 C -0.06 -2.22 5.19 29.10 0.15 -2.07 16 16 C -0.17 -7.39 4.43 -19.40 -0.09 -7.48 16 17 C -0.07 -2.80 9.66 22.22 0.21 -2.59 16 18 C -0.23 -8.65 10.05 22.46 0.23 -8.42 16 19 C -0.09 -3.69 10.02 22.22 0.22 -3.46 16 20 C -0.26 -12.30 7.17 22.73 0.16 -12.13 16 21 C 0.09 4.26 5.10 -21.29 -0.11 4.15 16 22 C -0.47 -25.49 8.56 23.46 0.20 -25.29 16 23 H 0.06 3.41 6.99 -2.91 -0.02 3.38 16 24 C 0.05 2.58 5.41 85.26 0.46 3.04 16 25 N -0.85 -46.60 13.93 21.82 0.30 -46.30 16 26 Si 0.96 42.90 24.52 68.60 1.68 44.58 16 27 H -0.27 -11.67 6.71 99.48 0.67 -11.00 16 28 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 29 H -0.25 -11.12 6.85 99.48 0.68 -10.44 16 30 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.39 7.68 -2.39 -0.02 1.37 16 36 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.43 10.85 7.98 -213.32 -1.70 9.15 16 38 H 0.44 11.51 8.00 -213.33 -1.71 9.80 16 39 H 0.10 3.66 7.15 -2.39 -0.02 3.64 16 40 H 0.13 3.28 8.05 -2.39 -0.02 3.26 16 41 H 0.13 3.91 8.06 -2.91 -0.02 3.88 16 42 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 43 H 0.12 4.20 8.06 -2.91 -0.02 4.17 16 44 H 0.09 4.38 4.74 -2.91 -0.01 4.37 16 45 H 0.29 14.41 8.30 -92.71 -0.77 13.64 16 Total: -1.00 -70.65 371.18 -0.14 -70.80 By element: Atomic # 1 Polarization: 40.67 SS G_CDS: -2.43 Total: 38.24 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: 4.24 Total: -24.21 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -1.85 Total: -77.76 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -1.79 Total: -51.65 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.68 Total: 44.58 kcal Total: -70.65 -0.14 -70.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843661016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.228 kcal (2) G-P(sol) polarization free energy of solvation -70.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds