Wall clock time and date at job start Tue Mar 31 2020 18:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99815 * 2 1 4 4 C 1.52995 * 109.46881 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47608 * 55.00360 * 4 3 2 6 6 C 1.52999 * 109.47507 * 295.00160 * 4 3 2 7 7 C 1.53001 * 109.47002 * 175.00270 * 4 3 2 8 8 C 1.50700 * 109.47169 * 185.00013 * 7 4 3 9 9 N 1.29942 * 126.28935 * 270.02448 * 8 7 4 10 10 O 1.21302 * 110.25285 * 179.68304 * 9 8 7 11 11 C 1.33638 * 109.81018 * 0.47050 * 10 9 8 12 12 C 1.50704 * 126.55168 * 179.80352 * 11 10 9 13 13 C 1.50700 * 109.46959 * 269.68310 * 12 11 10 14 14 C 1.38300 * 119.93244 * 269.72734 * 13 12 11 15 15 C 1.38106 * 120.06911 * 180.27763 * 14 13 12 16 16 C 1.38881 * 119.92778 * 0.02562 * 15 14 13 17 17 O 1.35749 * 120.06527 * 179.97438 * 16 15 14 18 18 C 1.34824 * 116.99895 * 174.48731 * 17 16 15 19 19 H 1.07999 * 120.00457 * 5.05901 * 18 17 16 20 20 C 1.38664 * 120.00188 * 185.06318 * 18 17 16 21 21 N 1.31553 * 119.99691 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 120.00093 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.47369 * 59.99971 * 22 20 18 24 24 H 1.48506 * 109.47106 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47392 * 299.99501 * 22 20 18 26 26 C 1.38872 * 119.86672 * 359.97438 * 16 15 14 27 27 C 1.38101 * 119.92848 * 0.02562 * 26 16 15 28 28 N 1.31130 * 106.89653 * 359.53884 * 11 10 9 29 29 H 1.09000 * 109.47044 * 299.99349 * 1 2 3 30 30 H 1.09001 * 109.47359 * 59.99624 * 1 2 3 31 31 H 1.09004 * 109.47102 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46843 * 60.00132 * 3 2 1 33 33 H 1.08998 * 109.47121 * 300.00064 * 3 2 1 34 34 H 1.08995 * 109.46972 * 300.00421 * 6 4 3 35 35 H 1.09005 * 109.47094 * 59.99825 * 6 4 3 36 36 H 1.09001 * 109.47685 * 180.02562 * 6 4 3 37 37 H 1.08998 * 109.46930 * 65.00135 * 7 4 3 38 38 H 1.09004 * 109.47223 * 305.00009 * 7 4 3 39 39 H 1.08997 * 109.47132 * 149.68804 * 12 11 10 40 40 H 1.08994 * 109.47288 * 29.68159 * 12 11 10 41 41 H 1.07994 * 119.96775 * 0.25364 * 14 13 12 42 42 H 1.08000 * 120.03533 * 180.02562 * 15 14 13 43 43 H 0.97000 * 120.00325 * 179.97438 * 21 20 18 44 44 H 1.07999 * 120.03823 * 180.02562 * 26 16 15 45 45 H 1.08002 * 119.96332 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8508 0.5686 -0.8427 6 6 3.9963 0.5364 1.3063 7 6 4.1572 2.5770 -0.1263 8 6 5.6536 2.4495 -0.2505 9 7 6.5083 2.4373 0.7283 10 8 7.6363 2.3155 0.2992 11 6 7.6083 2.2462 -1.0351 12 6 8.7957 2.0971 -1.9512 13 6 9.3055 3.4613 -2.3387 14 6 8.8112 4.0874 -3.4684 15 6 9.2806 5.3351 -3.8294 16 6 10.2504 5.9608 -3.0568 17 8 10.7141 7.1869 -3.4092 18 6 11.5689 7.7865 -2.5562 19 1 11.9186 7.2581 -1.6817 20 6 11.9990 9.0817 -2.8017 21 7 11.5733 9.7253 -3.8671 22 14 13.1838 9.9121 -1.6202 23 1 14.4408 9.1249 -1.5448 24 1 13.4869 11.2827 -2.1049 25 1 12.5661 9.9887 -0.2720 26 6 10.7447 5.3294 -1.9229 27 6 10.2713 4.0818 -1.5673 28 7 6.3499 2.3269 -1.3946 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.6809 1.1525 2.1484 35 1 3.5532 -0.4555 1.3959 36 1 5.0829 0.4507 1.3061 37 1 3.9148 3.1644 0.7593 38 1 3.7602 3.0737 -1.0116 39 1 8.4972 1.5529 -2.8471 40 1 9.5841 1.5470 -1.4376 41 1 8.0577 3.6001 -4.0693 42 1 8.8939 5.8238 -4.7115 43 1 11.8738 10.6315 -4.0387 44 1 11.4985 5.8136 -1.3199 45 1 10.6550 3.5905 -0.6854 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844882318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:24 Heat of formation + Delta-G solvation = 5.767189 kcal Electronic energy + Delta-G solvation = -26992.420889 eV Core-core repulsion = 22978.954628 eV Total energy + Delta-G solvation = -4013.466261 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.47455 -39.16517 -38.70728 -36.97732 -36.62097 -34.93878 -33.34963 -32.30280 -30.53312 -30.23975 -28.32343 -27.63917 -26.71299 -25.82932 -25.21574 -23.54132 -22.05946 -21.88507 -20.74672 -20.34439 -18.10211 -17.99586 -17.43437 -16.96500 -16.74273 -16.38457 -15.66906 -15.28278 -14.84729 -14.70916 -14.48060 -14.41565 -14.04329 -13.74033 -13.68416 -13.53366 -13.01270 -12.79756 -12.78208 -12.65890 -12.44278 -12.01684 -11.88544 -11.81273 -11.59804 -11.38239 -11.30932 -11.28428 -11.06794 -10.94151 -10.88540 -10.82663 -10.71898 -10.49620 -10.05262 -9.73618 -9.42159 -8.90284 -8.27780 -7.31845 -6.52327 -4.11129 1.23797 2.05779 2.14172 2.32053 3.00207 3.09565 3.11500 3.13497 3.27832 3.74427 3.91142 4.05031 4.44714 4.52428 4.55642 4.72241 4.92657 4.93701 5.01058 5.03807 5.05585 5.12801 5.16808 5.21763 5.25225 5.27025 5.29148 5.40839 5.57840 5.60368 5.63653 5.71279 5.78221 5.84859 5.91828 6.03847 6.07655 6.12894 6.32689 6.60117 6.76019 6.80242 6.95735 7.14021 7.24329 7.35274 7.71375 7.92205 8.26358 8.92799 9.60959 10.65078 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020784 B = 0.001952 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.879063 B =14344.009434 C =14487.922600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.068 3.932 4 C -0.085 4.085 5 H 0.085 0.915 6 C -0.144 4.144 7 C -0.022 4.022 8 C 0.172 3.828 9 N -0.387 5.387 10 O 0.073 5.927 11 C 0.203 3.797 12 C 0.031 3.969 13 C -0.204 4.204 14 C -0.051 4.051 15 C -0.195 4.195 16 C 0.160 3.840 17 O -0.173 6.173 18 C -0.394 4.394 19 H 0.093 0.907 20 C 0.041 3.959 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.236 4.236 27 C -0.054 4.054 28 N -0.485 5.485 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.272 0.728 44 H 0.129 0.871 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.953 -17.228 7.251 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.009 4.009 4 C -0.104 4.104 5 H 0.104 0.896 6 C -0.201 4.201 7 C -0.061 4.061 8 C -0.101 4.101 9 N -0.096 5.096 10 O 0.016 5.984 11 C -0.017 4.017 12 C -0.007 4.007 13 C -0.206 4.206 14 C -0.070 4.070 15 C -0.214 4.214 16 C 0.105 3.895 17 O -0.075 6.075 18 C -0.470 4.470 19 H 0.111 0.889 20 C -0.164 4.164 21 N -0.493 5.493 22 Si 0.766 3.234 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.255 4.255 27 C -0.073 4.073 28 N -0.218 5.218 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.128 0.872 40 H 0.120 0.880 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.082 0.918 44 H 0.147 0.853 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.417 -16.908 7.498 24.079 hybrid contribution 0.531 0.812 0.577 1.129 sum -14.887 -16.096 8.075 23.364 Atomic orbital electron populations 1.22745 0.80943 1.02790 1.00032 1.87871 1.19685 1.27837 1.95426 1.22527 0.93005 0.84803 1.00544 1.21043 0.93111 0.95735 1.00529 0.89626 1.21802 1.01269 1.01110 0.95942 1.19888 0.83773 0.97823 1.04626 1.25518 0.99475 1.00969 0.84102 1.74599 0.90246 1.21306 1.23456 1.85278 1.24801 1.65214 1.23125 1.29128 0.95789 0.93743 0.83029 1.18979 0.89210 0.97170 0.95388 1.18802 1.04718 0.96655 1.00444 1.20527 0.97359 0.93742 0.95357 1.20209 1.01372 0.96806 1.03023 1.19449 0.91297 0.86658 0.92048 1.83976 1.54667 1.24684 1.44187 1.21315 1.22642 0.97396 1.05644 0.88949 1.25319 0.98229 0.95431 0.97469 1.70025 1.41795 1.12340 1.25175 0.85766 0.79690 0.78482 0.79437 1.19384 1.20207 1.19437 1.21139 1.06363 0.97153 1.00877 1.20650 0.95039 0.94236 0.97339 1.71874 1.01702 1.20920 1.27340 0.94069 0.93988 0.89614 0.92936 0.92823 0.92570 0.91743 0.92686 0.88984 0.88429 0.87176 0.88047 0.86632 0.86317 0.91827 0.85329 0.87081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.60 10.24 -35.23 -0.36 -3.96 16 3 C 0.07 0.54 5.32 37.15 0.20 0.74 16 4 C -0.08 -0.79 2.62 -90.62 -0.24 -1.03 16 5 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 6 C -0.14 -1.41 8.90 37.16 0.33 -1.07 16 7 C -0.02 -0.22 5.32 -27.88 -0.15 -0.37 16 8 C 0.17 2.36 6.68 -156.38 -1.05 1.31 16 9 N -0.39 -5.72 11.46 30.90 0.35 -5.37 16 10 O 0.07 1.07 11.31 18.11 0.20 1.28 16 11 C 0.20 2.81 7.75 -13.06 -0.10 2.71 16 12 C 0.03 0.37 5.97 -29.03 -0.17 0.20 16 13 C -0.20 -3.20 5.12 -104.57 -0.54 -3.74 16 14 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 15 C -0.19 -3.99 9.99 -39.39 -0.39 -4.39 16 16 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 17 O -0.17 -4.83 9.76 0.07 0.00 -4.83 16 18 C -0.39 -10.79 9.49 30.89 0.29 -10.50 16 19 H 0.09 2.33 5.20 -52.49 -0.27 2.05 16 20 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 21 N -0.86 -24.79 13.67 55.48 0.76 -24.03 16 22 Si 0.94 20.15 29.55 -169.99 -5.02 15.13 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 C -0.24 -4.92 9.17 -39.40 -0.36 -5.29 16 27 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 28 N -0.48 -7.09 11.55 -9.87 -0.11 -7.21 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.62 7.82 -51.93 -0.41 0.22 16 36 H 0.05 0.62 6.84 -51.93 -0.36 0.27 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.11 1.10 8.08 -51.93 -0.42 0.68 16 40 H 0.10 0.93 8.08 -51.93 -0.42 0.51 16 41 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 43 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.13 2.69 5.64 -52.49 -0.30 2.39 16 45 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 385.15 15.07 5.80 5.80 Total: -1.00 -31.96 385.15 -6.94 -38.90 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.38 Total: 2.48 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -2.19 Total: -18.19 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 1.00 Total: -36.61 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.16 Total: -7.51 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.96 -6.94 -38.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844882318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.663 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds