Wall clock time and date at job start Tue Mar 31 2020 18:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99815 * 2 1 4 4 C 1.52995 * 109.46881 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47608 * 55.00360 * 4 3 2 6 6 C 1.52999 * 109.47507 * 295.00160 * 4 3 2 7 7 C 1.53001 * 109.47002 * 175.00270 * 4 3 2 8 8 C 1.50700 * 109.47169 * 185.00013 * 7 4 3 9 9 N 1.29942 * 126.28935 * 270.02448 * 8 7 4 10 10 O 1.21302 * 110.25285 * 179.68304 * 9 8 7 11 11 C 1.33638 * 109.81018 * 0.47050 * 10 9 8 12 12 C 1.50704 * 126.55168 * 179.80352 * 11 10 9 13 13 C 1.50700 * 109.46959 * 269.68310 * 12 11 10 14 14 C 1.38300 * 119.93244 * 269.72734 * 13 12 11 15 15 C 1.38106 * 120.06911 * 180.27763 * 14 13 12 16 16 C 1.38881 * 119.92778 * 0.02562 * 15 14 13 17 17 O 1.35749 * 120.06527 * 179.97438 * 16 15 14 18 18 C 1.34824 * 116.99895 * 174.48731 * 17 16 15 19 19 H 1.07999 * 120.00457 * 5.05901 * 18 17 16 20 20 C 1.38664 * 120.00188 * 185.06318 * 18 17 16 21 21 N 1.31553 * 119.99691 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 120.00093 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.47369 * 59.99971 * 22 20 18 24 24 H 1.48506 * 109.47106 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47392 * 299.99501 * 22 20 18 26 26 C 1.38872 * 119.86672 * 359.97438 * 16 15 14 27 27 C 1.38101 * 119.92848 * 0.02562 * 26 16 15 28 28 N 1.31130 * 106.89653 * 359.53884 * 11 10 9 29 29 H 1.09000 * 109.47044 * 299.99349 * 1 2 3 30 30 H 1.09001 * 109.47359 * 59.99624 * 1 2 3 31 31 H 1.09004 * 109.47102 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46843 * 60.00132 * 3 2 1 33 33 H 1.08998 * 109.47121 * 300.00064 * 3 2 1 34 34 H 1.08995 * 109.46972 * 300.00421 * 6 4 3 35 35 H 1.09005 * 109.47094 * 59.99825 * 6 4 3 36 36 H 1.09001 * 109.47685 * 180.02562 * 6 4 3 37 37 H 1.08998 * 109.46930 * 65.00135 * 7 4 3 38 38 H 1.09004 * 109.47223 * 305.00009 * 7 4 3 39 39 H 1.08997 * 109.47132 * 149.68804 * 12 11 10 40 40 H 1.08994 * 109.47288 * 29.68159 * 12 11 10 41 41 H 1.07994 * 119.96775 * 0.25364 * 14 13 12 42 42 H 1.08000 * 120.03533 * 180.02562 * 15 14 13 43 43 H 0.97000 * 120.00325 * 179.97438 * 21 20 18 44 44 H 1.07999 * 120.03823 * 180.02562 * 26 16 15 45 45 H 1.08002 * 119.96332 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8508 0.5686 -0.8427 6 6 3.9963 0.5364 1.3063 7 6 4.1572 2.5770 -0.1263 8 6 5.6536 2.4495 -0.2505 9 7 6.5083 2.4373 0.7283 10 8 7.6363 2.3155 0.2992 11 6 7.6083 2.2462 -1.0351 12 6 8.7957 2.0971 -1.9512 13 6 9.3055 3.4613 -2.3387 14 6 8.8112 4.0874 -3.4684 15 6 9.2806 5.3351 -3.8294 16 6 10.2504 5.9608 -3.0568 17 8 10.7141 7.1869 -3.4092 18 6 11.5689 7.7865 -2.5562 19 1 11.9186 7.2581 -1.6817 20 6 11.9990 9.0817 -2.8017 21 7 11.5733 9.7253 -3.8671 22 14 13.1838 9.9121 -1.6202 23 1 14.4408 9.1249 -1.5448 24 1 13.4869 11.2827 -2.1049 25 1 12.5661 9.9887 -0.2720 26 6 10.7447 5.3294 -1.9229 27 6 10.2713 4.0818 -1.5673 28 7 6.3499 2.3269 -1.3946 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.6809 1.1525 2.1484 35 1 3.5532 -0.4555 1.3959 36 1 5.0829 0.4507 1.3061 37 1 3.9148 3.1644 0.7593 38 1 3.7602 3.0737 -1.0116 39 1 8.4972 1.5529 -2.8471 40 1 9.5841 1.5470 -1.4376 41 1 8.0577 3.6001 -4.0693 42 1 8.8939 5.8238 -4.7115 43 1 11.8738 10.6315 -4.0387 44 1 11.4985 5.8136 -1.3199 45 1 10.6550 3.5905 -0.6854 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844882318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:23 Heat of formation + Delta-G solvation = -15.139801 kcal Electronic energy + Delta-G solvation = -26993.327484 eV Core-core repulsion = 22978.954628 eV Total energy + Delta-G solvation = -4014.372856 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -46.55308 -40.82014 -39.35247 -38.59573 -37.49989 -35.93927 -34.63348 -34.04559 -31.88911 -31.72157 -29.11733 -28.30966 -28.15261 -27.00705 -26.44392 -24.60313 -23.62823 -23.04190 -21.97167 -21.27751 -19.86764 -19.15310 -18.83316 -18.35603 -17.44032 -16.98013 -16.55184 -16.44378 -16.33772 -16.12124 -15.90985 -15.52359 -15.23808 -15.08892 -14.87074 -14.49839 -14.40473 -14.23497 -13.81968 -13.59561 -13.54015 -13.17751 -12.95576 -12.93002 -12.76965 -12.62407 -12.44892 -12.39822 -12.30594 -12.15506 -12.08317 -11.96068 -11.88669 -11.73749 -11.19042 -10.84034 -10.79191 -10.60930 -9.79947 -8.99355 -8.48529 -6.16856 0.14730 0.59168 0.60362 1.24324 1.34891 1.45066 1.50906 1.94821 2.16963 2.53346 2.79475 2.94897 3.11748 3.18499 3.49775 3.76115 3.82039 3.93450 4.02925 4.04922 4.16806 4.19115 4.36156 4.41508 4.45626 4.48238 4.54405 4.58154 4.60733 4.65776 4.75384 4.77307 4.83282 4.86628 4.87629 4.94105 5.03893 5.09296 5.14596 5.15389 5.26667 5.28277 5.54157 5.69849 5.72534 6.01241 6.18320 6.22649 6.96006 7.20086 7.75830 8.74172 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020784 B = 0.001952 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.879063 B =14344.009434 C =14487.922600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.069 3.931 4 C -0.077 4.077 5 H 0.071 0.929 6 C -0.138 4.138 7 C -0.023 4.023 8 C 0.169 3.831 9 N -0.403 5.403 10 O 0.066 5.934 11 C 0.201 3.799 12 C 0.034 3.966 13 C -0.173 4.173 14 C -0.046 4.046 15 C -0.209 4.209 16 C 0.119 3.881 17 O -0.231 6.231 18 C -0.415 4.415 19 H 0.103 0.897 20 C -0.022 4.022 21 N -0.919 5.919 22 Si 1.018 2.982 23 H -0.255 1.255 24 H -0.272 1.272 25 H -0.259 1.259 26 C -0.247 4.247 27 C -0.051 4.051 28 N -0.500 5.500 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.036 0.964 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.149 0.851 42 H 0.112 0.888 43 H 0.273 0.727 44 H 0.121 0.879 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.951 -19.857 8.898 26.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.007 4.007 4 C -0.097 4.097 5 H 0.089 0.911 6 C -0.196 4.196 7 C -0.061 4.061 8 C -0.104 4.104 9 N -0.114 5.114 10 O 0.010 5.990 11 C -0.019 4.019 12 C -0.004 4.004 13 C -0.175 4.175 14 C -0.064 4.064 15 C -0.228 4.228 16 C 0.068 3.932 17 O -0.137 6.137 18 C -0.491 4.491 19 H 0.121 0.879 20 C -0.220 4.220 21 N -0.557 5.557 22 Si 0.837 3.163 23 H -0.179 1.179 24 H -0.197 1.197 25 H -0.183 1.183 26 C -0.266 4.266 27 C -0.069 4.069 28 N -0.234 5.234 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.167 0.833 42 H 0.130 0.870 43 H 0.082 0.918 44 H 0.138 0.862 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.433 -19.607 9.158 27.173 hybrid contribution 0.599 1.224 0.095 1.366 sum -15.834 -18.383 9.254 25.967 Atomic orbital electron populations 1.22915 0.79445 1.03740 1.00926 1.87829 1.21405 1.28547 1.95632 1.22527 0.91759 0.84711 1.01722 1.20939 0.94281 0.94886 0.99560 0.91067 1.21741 0.99978 1.01282 0.96568 1.20059 0.81847 0.98506 1.05730 1.26105 1.00760 0.99863 0.83625 1.74603 0.90527 1.22205 1.24075 1.85254 1.24832 1.65422 1.23473 1.29398 0.96116 0.93351 0.83045 1.19203 0.89626 0.94809 0.96738 1.19275 1.02081 0.97743 0.98370 1.20932 0.97223 0.92219 0.96003 1.20459 1.01205 0.98297 1.02860 1.20019 0.92946 0.86162 0.94055 1.83942 1.56859 1.27045 1.45843 1.21802 1.22991 0.98127 1.06168 0.87925 1.26596 1.00167 0.95863 0.99382 1.70174 1.44671 1.12930 1.27922 0.84660 0.77387 0.77289 0.76983 1.17917 1.19678 1.18340 1.21274 1.06490 0.98708 1.00105 1.21079 0.94682 0.92704 0.98453 1.71892 1.02273 1.21356 1.27904 0.93072 0.93164 0.88766 0.91647 0.91728 0.91887 0.91905 0.94446 0.87806 0.87341 0.84402 0.84273 0.83345 0.86958 0.91812 0.86153 0.83234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.41 -6.91 10.24 -148.98 -1.53 -8.43 16 3 C 0.07 0.94 5.32 71.98 0.38 1.33 16 4 C -0.08 -1.30 2.62 -10.80 -0.03 -1.33 16 5 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 6 C -0.14 -2.51 8.90 71.98 0.64 -1.86 16 7 C -0.02 -0.41 5.32 29.85 0.16 -0.25 16 8 C 0.17 4.26 6.68 138.46 0.93 5.19 16 9 N -0.40 -11.10 11.46 -60.33 -0.69 -11.79 16 10 O 0.07 1.74 11.31 74.88 0.85 2.59 16 11 C 0.20 4.83 7.75 88.38 0.68 5.51 16 12 C 0.03 0.63 5.97 29.10 0.17 0.81 16 13 C -0.17 -4.77 5.12 -19.83 -0.10 -4.87 16 14 C -0.05 -1.44 9.69 22.25 0.22 -1.23 16 15 C -0.21 -8.67 9.99 22.39 0.22 -8.44 16 16 C 0.12 5.80 6.65 22.58 0.15 5.95 16 17 O -0.23 -13.77 9.76 -22.67 -0.22 -14.00 16 18 C -0.41 -23.94 9.49 67.92 0.64 -23.30 16 19 H 0.10 5.39 5.20 -2.91 -0.02 5.38 16 20 C -0.02 -1.26 5.49 84.84 0.47 -0.79 16 21 N -0.92 -56.20 13.67 21.62 0.30 -55.91 16 22 Si 1.02 42.51 29.55 68.60 2.03 44.54 16 23 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 24 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 25 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 26 C -0.25 -10.29 9.17 22.39 0.21 -10.08 16 27 C -0.05 -1.60 9.69 22.25 0.22 -1.39 16 28 N -0.50 -13.19 11.55 -303.20 -3.50 -16.69 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 1.14 7.82 -2.38 -0.02 1.12 16 36 H 0.04 0.80 6.84 -2.39 -0.02 0.78 16 37 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.14 1.92 8.08 -2.39 -0.02 1.90 16 40 H 0.14 1.65 8.08 -2.39 -0.02 1.63 16 41 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 42 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 43 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 44 H 0.12 5.13 5.64 -2.91 -0.02 5.11 16 45 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -75.37 385.15 4.43 -70.94 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 1.00 Total: 22.01 kcal Atomic # 6 Polarization: -39.45 SS G_CDS: 6.21 Total: -33.25 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -3.90 Total: -84.39 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.90 Total: -19.84 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -75.37 4.43 -70.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844882318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.795 kcal (2) G-P(sol) polarization free energy of solvation -75.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds