Wall clock time and date at job start Tue Mar 31 2020 18:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99303 * 2 1 4 4 C 1.53003 * 109.46568 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47184 * 55.00443 * 4 3 2 6 6 C 1.52998 * 109.47542 * 295.00061 * 4 3 2 7 7 C 1.53006 * 109.47222 * 174.99720 * 4 3 2 8 8 C 1.50694 * 109.47019 * 185.00209 * 7 4 3 9 9 N 1.29944 * 126.28847 * 89.98367 * 8 7 4 10 10 O 1.21300 * 110.25251 * 179.97438 * 9 8 7 11 11 C 1.33642 * 109.81034 * 359.97438 * 10 9 8 12 12 C 1.50700 * 126.55191 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47293 * 270.02751 * 12 11 10 14 14 C 1.38328 * 119.96972 * 89.99434 * 13 12 11 15 15 C 1.38275 * 120.13835 * 180.02562 * 14 13 12 16 16 C 1.38123 * 120.06977 * 0.28020 * 15 14 13 17 17 C 1.38853 * 119.93133 * 359.45069 * 16 15 14 18 18 O 1.35749 * 120.07112 * 180.27775 * 17 16 15 19 19 C 1.34833 * 116.99801 * 354.75701 * 18 17 16 20 20 H 1.07999 * 120.00283 * 5.08278 * 19 18 17 21 21 C 1.38658 * 119.99720 * 185.08053 * 19 18 17 22 22 N 1.31553 * 120.00147 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99773 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46855 * 90.00122 * 23 21 19 25 25 H 1.48494 * 109.47218 * 210.00112 * 23 21 19 26 26 H 1.48498 * 109.46997 * 330.00116 * 23 21 19 27 27 C 1.38080 * 119.96292 * 270.02113 * 13 12 11 28 28 N 1.31127 * 106.89760 * 0.22731 * 11 10 9 29 29 H 1.08999 * 109.47435 * 60.00037 * 1 2 3 30 30 H 1.09001 * 109.46755 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47404 * 299.99672 * 1 2 3 32 32 H 1.09002 * 109.47437 * 60.00380 * 3 2 1 33 33 H 1.08997 * 109.47628 * 299.99621 * 3 2 1 34 34 H 1.08997 * 109.46821 * 300.00005 * 6 4 3 35 35 H 1.09005 * 109.46779 * 59.99930 * 6 4 3 36 36 H 1.09002 * 109.47092 * 179.97438 * 6 4 3 37 37 H 1.09000 * 109.46352 * 65.00238 * 7 4 3 38 38 H 1.08999 * 109.47195 * 305.00515 * 7 4 3 39 39 H 1.09001 * 109.47395 * 150.02322 * 12 11 10 40 40 H 1.08998 * 109.47262 * 30.02419 * 12 11 10 41 41 H 1.08001 * 119.92799 * 0.02562 * 14 13 12 42 42 H 1.08000 * 119.96093 * 180.02562 * 15 14 13 43 43 H 1.07996 * 120.03245 * 179.70156 * 16 15 14 44 44 H 0.96999 * 119.99776 * 179.97438 * 22 21 19 45 45 H 1.07996 * 120.03814 * 359.95608 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8514 0.5683 -0.8410 6 6 3.9952 0.5370 1.3082 7 6 4.1573 2.5770 -0.1252 8 6 5.6538 2.4494 -0.2481 9 7 6.3273 2.3302 -1.3529 10 8 7.5139 2.2493 -1.1147 11 6 7.7162 2.3117 0.2049 12 6 9.0448 2.2469 0.9132 13 6 9.3741 0.8116 1.2331 14 6 10.0824 0.0461 0.3244 15 6 10.3860 -1.2714 0.6142 16 6 9.9775 -1.8289 1.8101 17 6 9.2712 -1.0615 2.7267 18 8 8.8733 -1.6049 3.9053 19 6 9.0996 -2.9227 4.0792 20 1 9.6505 -3.4788 3.3351 21 6 8.6251 -3.5639 5.2133 22 7 7.9536 -2.8866 6.1195 23 14 8.9380 -5.3897 5.4539 24 1 10.2171 -5.5807 6.1837 25 1 7.8264 -5.9832 6.2395 26 1 9.0193 -6.0567 4.1296 27 6 8.9679 0.2618 2.4329 28 7 6.5374 2.4346 0.7658 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.6792 1.1534 2.1498 35 1 3.5521 -0.4549 1.3978 36 1 5.0818 0.4506 1.3084 37 1 3.9142 3.1648 0.7601 38 1 3.7609 3.0734 -1.0110 39 1 8.9923 2.8224 1.8375 40 1 9.8202 2.6628 0.2699 41 1 10.3990 0.4784 -0.6133 42 1 10.9395 -1.8664 -0.0972 43 1 10.2108 -2.8594 2.0336 44 1 7.6213 -3.3353 6.9127 45 1 8.4152 0.8599 3.1421 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844885187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:33 Heat of formation + Delta-G solvation = 7.557528 kcal Electronic energy + Delta-G solvation = -27798.604510 eV Core-core repulsion = 23785.215884 eV Total energy + Delta-G solvation = -4013.388626 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.46274 -39.14406 -38.52927 -36.89258 -36.54702 -34.81193 -33.42538 -32.29658 -31.04198 -29.25966 -28.17887 -27.38162 -27.01816 -25.66195 -25.28983 -23.49256 -22.18283 -21.58746 -20.86390 -20.09967 -18.09370 -17.76378 -17.35855 -16.95947 -16.53718 -16.18152 -15.50775 -15.15959 -15.10272 -14.66644 -14.46078 -14.40585 -13.94631 -13.63484 -13.56468 -13.47605 -13.04726 -12.75654 -12.59847 -12.42735 -12.35365 -11.86668 -11.75267 -11.60842 -11.52610 -11.32827 -11.21369 -11.04805 -10.92206 -10.90010 -10.82556 -10.71164 -10.67728 -10.47024 -9.87476 -9.75617 -9.37481 -8.86766 -8.21704 -7.30355 -6.46489 -4.05752 1.23077 1.93540 2.28784 2.34549 3.00123 3.12145 3.13646 3.18036 3.43436 3.79781 3.95015 4.08687 4.49134 4.66341 4.76122 4.88191 4.91707 5.00596 5.08041 5.09214 5.12825 5.18255 5.20566 5.29064 5.40536 5.44815 5.46845 5.57977 5.65803 5.70800 5.76632 5.87035 5.87652 6.08430 6.09870 6.14005 6.17686 6.28294 6.50235 6.56239 6.83307 6.95326 7.01412 7.15449 7.29403 7.38340 7.72382 7.97556 8.28011 8.98821 9.67582 10.71190 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008323 B = 0.003455 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3363.423423 B = 8102.791318 C =10714.226900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.069 3.931 4 C -0.085 4.085 5 H 0.080 0.920 6 C -0.144 4.144 7 C -0.021 4.021 8 C 0.175 3.825 9 N -0.390 5.390 10 O 0.075 5.925 11 C 0.200 3.800 12 C 0.019 3.981 13 C -0.062 4.062 14 C -0.200 4.200 15 C -0.075 4.075 16 C -0.227 4.227 17 C 0.151 3.849 18 O -0.175 6.175 19 C -0.393 4.393 20 H 0.092 0.908 21 C 0.041 3.959 22 N -0.860 5.860 23 Si 0.940 3.060 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.167 4.167 28 N -0.473 5.473 29 H 0.039 0.961 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.128 0.872 44 H 0.270 0.730 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.953 10.558 -12.166 17.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C -0.008 4.008 4 C -0.105 4.105 5 H 0.099 0.901 6 C -0.201 4.201 7 C -0.060 4.060 8 C -0.098 4.098 9 N -0.099 5.099 10 O 0.017 5.983 11 C -0.020 4.020 12 C -0.020 4.020 13 C -0.063 4.063 14 C -0.219 4.219 15 C -0.093 4.093 16 C -0.246 4.246 17 C 0.098 3.902 18 O -0.078 6.078 19 C -0.469 4.469 20 H 0.109 0.891 21 C -0.164 4.164 22 N -0.494 5.494 23 Si 0.765 3.235 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.192 1.192 27 C -0.187 4.187 28 N -0.206 5.206 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.135 0.865 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.145 0.855 44 H 0.080 0.920 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.752 10.472 -12.179 17.835 hybrid contribution 0.108 -0.858 0.105 0.871 sum -7.644 9.613 -12.074 17.223 Atomic orbital electron populations 1.22738 0.81088 1.02832 0.99816 1.87917 1.19547 1.27671 1.95361 1.22515 0.93130 0.84895 1.00210 1.21080 0.93026 0.95366 1.01038 0.90115 1.21787 1.02078 1.01059 0.95173 1.19903 0.83514 0.98221 1.04370 1.25572 0.99672 1.00673 0.83898 1.74579 0.89639 1.21502 1.24161 1.85269 1.20280 1.65499 1.27264 1.28806 0.98002 0.94282 0.80932 1.19130 0.86200 0.96628 0.99997 1.18849 0.99854 0.92829 0.94798 1.20474 1.06550 0.95077 0.99762 1.20721 0.98049 0.94607 0.95931 1.21247 1.05894 1.01492 0.95994 1.19295 0.92222 0.92335 0.86392 1.83983 1.70104 1.25363 1.28354 1.21321 1.36618 0.81643 1.07343 0.89073 1.25283 0.95880 1.00276 0.94956 1.70036 1.33530 1.36550 1.09315 0.85726 0.78345 0.80541 0.78924 1.19838 1.20211 1.19182 1.20063 1.06397 0.94178 0.98024 1.71949 0.98277 1.20270 1.30097 0.94238 0.89593 0.94030 0.92838 0.93272 0.92398 0.91747 0.91948 0.88383 0.89180 0.86500 0.87429 0.87232 0.87219 0.85465 0.91975 0.86093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.65 10.24 -35.23 -0.36 -5.02 16 3 C 0.07 0.70 5.32 37.16 0.20 0.90 16 4 C -0.09 -1.03 2.62 -90.62 -0.24 -1.27 16 5 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 6 C -0.14 -2.09 8.90 37.16 0.33 -1.76 16 7 C -0.02 -0.23 5.32 -27.88 -0.15 -0.38 16 8 C 0.17 2.53 6.67 -156.38 -1.04 1.49 16 9 N -0.39 -5.97 12.16 30.90 0.38 -5.59 16 10 O 0.07 1.11 11.31 18.10 0.20 1.31 16 11 C 0.20 2.89 7.75 -13.06 -0.10 2.79 16 12 C 0.02 0.24 5.97 -29.04 -0.17 0.07 16 13 C -0.06 -1.03 5.11 -104.65 -0.54 -1.56 16 14 C -0.20 -3.24 9.70 -39.53 -0.38 -3.63 16 15 C -0.07 -1.33 10.04 -39.61 -0.40 -1.73 16 16 C -0.23 -4.84 9.17 -39.40 -0.36 -5.20 16 17 C 0.15 3.59 6.65 -39.11 -0.26 3.33 16 18 O -0.17 -4.94 9.76 0.04 0.00 -4.94 16 19 C -0.39 -10.91 9.49 30.89 0.29 -10.61 16 20 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 21 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 22 N -0.86 -25.10 13.67 55.48 0.76 -24.34 16 23 Si 0.94 20.46 29.55 -169.99 -5.02 15.43 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 27 C -0.17 -3.41 9.65 -39.39 -0.38 -3.79 16 28 N -0.47 -7.39 10.87 -9.87 -0.11 -7.50 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.99 7.82 -51.93 -0.41 0.58 16 36 H 0.06 1.07 6.83 -51.93 -0.35 0.72 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.12 1.30 8.08 -51.93 -0.42 0.88 16 40 H 0.11 0.98 8.08 -51.93 -0.42 0.56 16 41 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.13 2.72 5.64 -52.49 -0.30 2.43 16 44 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 LS Contribution 385.14 15.07 5.80 5.80 Total: -1.00 -32.61 385.14 -6.91 -39.52 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.38 Total: 4.28 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -2.18 Total: -18.96 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 1.03 Total: -37.43 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.16 Total: -8.64 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.61 -6.91 -39.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844885187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.078 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds