Wall clock time and date at job start Tue Mar 31 2020 18:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99303 * 2 1 4 4 C 1.53003 * 109.46568 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47184 * 55.00443 * 4 3 2 6 6 C 1.52998 * 109.47542 * 295.00061 * 4 3 2 7 7 C 1.53006 * 109.47222 * 174.99720 * 4 3 2 8 8 C 1.50694 * 109.47019 * 185.00209 * 7 4 3 9 9 N 1.29944 * 126.28847 * 89.98367 * 8 7 4 10 10 O 1.21300 * 110.25251 * 179.97438 * 9 8 7 11 11 C 1.33642 * 109.81034 * 359.97438 * 10 9 8 12 12 C 1.50700 * 126.55191 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47293 * 270.02751 * 12 11 10 14 14 C 1.38328 * 119.96972 * 89.99434 * 13 12 11 15 15 C 1.38275 * 120.13835 * 180.02562 * 14 13 12 16 16 C 1.38123 * 120.06977 * 0.28020 * 15 14 13 17 17 C 1.38853 * 119.93133 * 359.45069 * 16 15 14 18 18 O 1.35749 * 120.07112 * 180.27775 * 17 16 15 19 19 C 1.34833 * 116.99801 * 354.75701 * 18 17 16 20 20 H 1.07999 * 120.00283 * 5.08278 * 19 18 17 21 21 C 1.38658 * 119.99720 * 185.08053 * 19 18 17 22 22 N 1.31553 * 120.00147 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99773 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46855 * 90.00122 * 23 21 19 25 25 H 1.48494 * 109.47218 * 210.00112 * 23 21 19 26 26 H 1.48498 * 109.46997 * 330.00116 * 23 21 19 27 27 C 1.38080 * 119.96292 * 270.02113 * 13 12 11 28 28 N 1.31127 * 106.89760 * 0.22731 * 11 10 9 29 29 H 1.08999 * 109.47435 * 60.00037 * 1 2 3 30 30 H 1.09001 * 109.46755 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47404 * 299.99672 * 1 2 3 32 32 H 1.09002 * 109.47437 * 60.00380 * 3 2 1 33 33 H 1.08997 * 109.47628 * 299.99621 * 3 2 1 34 34 H 1.08997 * 109.46821 * 300.00005 * 6 4 3 35 35 H 1.09005 * 109.46779 * 59.99930 * 6 4 3 36 36 H 1.09002 * 109.47092 * 179.97438 * 6 4 3 37 37 H 1.09000 * 109.46352 * 65.00238 * 7 4 3 38 38 H 1.08999 * 109.47195 * 305.00515 * 7 4 3 39 39 H 1.09001 * 109.47395 * 150.02322 * 12 11 10 40 40 H 1.08998 * 109.47262 * 30.02419 * 12 11 10 41 41 H 1.08001 * 119.92799 * 0.02562 * 14 13 12 42 42 H 1.08000 * 119.96093 * 180.02562 * 15 14 13 43 43 H 1.07996 * 120.03245 * 179.70156 * 16 15 14 44 44 H 0.96999 * 119.99776 * 179.97438 * 22 21 19 45 45 H 1.07996 * 120.03814 * 359.95608 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8514 0.5683 -0.8410 6 6 3.9952 0.5370 1.3082 7 6 4.1573 2.5770 -0.1252 8 6 5.6538 2.4494 -0.2481 9 7 6.3273 2.3302 -1.3529 10 8 7.5139 2.2493 -1.1147 11 6 7.7162 2.3117 0.2049 12 6 9.0448 2.2469 0.9132 13 6 9.3741 0.8116 1.2331 14 6 10.0824 0.0461 0.3244 15 6 10.3860 -1.2714 0.6142 16 6 9.9775 -1.8289 1.8101 17 6 9.2712 -1.0615 2.7267 18 8 8.8733 -1.6049 3.9053 19 6 9.0996 -2.9227 4.0792 20 1 9.6505 -3.4788 3.3351 21 6 8.6251 -3.5639 5.2133 22 7 7.9536 -2.8866 6.1195 23 14 8.9380 -5.3897 5.4539 24 1 10.2171 -5.5807 6.1837 25 1 7.8264 -5.9832 6.2395 26 1 9.0193 -6.0567 4.1296 27 6 8.9679 0.2618 2.4329 28 7 6.5374 2.4346 0.7658 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.6792 1.1534 2.1498 35 1 3.5521 -0.4549 1.3978 36 1 5.0818 0.4506 1.3084 37 1 3.9142 3.1648 0.7601 38 1 3.7609 3.0734 -1.0110 39 1 8.9923 2.8224 1.8375 40 1 9.8202 2.6628 0.2699 41 1 10.3990 0.4784 -0.6133 42 1 10.9395 -1.8664 -0.0972 43 1 10.2108 -2.8594 2.0336 44 1 7.6213 -3.3353 6.9127 45 1 8.4152 0.8599 3.1421 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844885187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:32 Heat of formation + Delta-G solvation = -14.238762 kcal Electronic energy + Delta-G solvation = -27799.549668 eV Core-core repulsion = 23785.215884 eV Total energy + Delta-G solvation = -4014.333784 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.59623 -40.81721 -39.38509 -38.55045 -37.56371 -35.93730 -34.67124 -34.22504 -32.35873 -30.87033 -29.12680 -28.44954 -28.23389 -27.24503 -26.47556 -24.64484 -23.51543 -23.02046 -22.28716 -21.16198 -19.61922 -19.14146 -18.82965 -18.41384 -17.40407 -16.98237 -16.75272 -16.50496 -16.37604 -16.12549 -16.04630 -15.49856 -15.33689 -15.19817 -14.76543 -14.53041 -14.46030 -14.12819 -13.92098 -13.63874 -13.45181 -13.22982 -12.97220 -12.83261 -12.77625 -12.65116 -12.45401 -12.41089 -12.24222 -12.17943 -12.10506 -12.06301 -11.93415 -11.72326 -11.24963 -10.86609 -10.80763 -10.62498 -9.73803 -9.01835 -8.47368 -6.15832 0.06967 0.46646 0.72366 1.20710 1.33760 1.42987 1.51123 1.87589 2.16699 2.54443 2.79116 2.92222 3.07941 3.18402 3.42616 3.71436 3.80420 3.87333 3.99276 4.09088 4.10168 4.30264 4.33476 4.38269 4.42008 4.48138 4.50872 4.54832 4.58398 4.61423 4.69738 4.74533 4.75533 4.84290 4.84762 4.92325 5.01874 5.04891 5.11674 5.12269 5.26003 5.27946 5.62697 5.69337 5.72492 6.01702 6.19126 6.23319 6.97270 7.16241 7.78227 8.75774 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008323 B = 0.003455 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3363.423423 B = 8102.791318 C =10714.226900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.071 3.929 4 C -0.077 4.077 5 H 0.062 0.938 6 C -0.138 4.138 7 C -0.019 4.019 8 C 0.170 3.830 9 N -0.404 5.404 10 O 0.076 5.924 11 C 0.199 3.801 12 C 0.023 3.977 13 C -0.050 4.050 14 C -0.174 4.174 15 C -0.074 4.074 16 C -0.241 4.241 17 C 0.109 3.891 18 O -0.232 6.232 19 C -0.414 4.414 20 H 0.101 0.899 21 C -0.022 4.022 22 N -0.919 5.919 23 Si 1.016 2.984 24 H -0.261 1.261 25 H -0.272 1.272 26 H -0.254 1.254 27 C -0.181 4.181 28 N -0.499 5.499 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.028 0.972 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.130 0.870 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.148 0.852 43 H 0.117 0.883 44 H 0.272 0.728 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 11.831 -15.271 20.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.005 4.005 4 C -0.097 4.097 5 H 0.080 0.920 6 C -0.195 4.195 7 C -0.058 4.058 8 C -0.103 4.103 9 N -0.113 5.113 10 O 0.019 5.981 11 C -0.021 4.021 12 C -0.015 4.015 13 C -0.052 4.052 14 C -0.192 4.192 15 C -0.092 4.092 16 C -0.260 4.260 17 C 0.059 3.941 18 O -0.139 6.139 19 C -0.490 4.490 20 H 0.118 0.882 21 C -0.219 4.219 22 N -0.557 5.557 23 Si 0.835 3.165 24 H -0.185 1.185 25 H -0.197 1.197 26 H -0.178 1.178 27 C -0.201 4.201 28 N -0.233 5.233 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.148 0.852 40 H 0.174 0.826 41 H 0.177 0.823 42 H 0.165 0.835 43 H 0.135 0.865 44 H 0.081 0.919 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.228 11.777 -15.342 20.648 hybrid contribution 0.010 -1.037 0.789 1.303 sum -7.219 10.740 -14.553 19.474 Atomic orbital electron populations 1.22914 0.79330 1.03613 1.01118 1.87870 1.21608 1.28914 1.95653 1.22548 0.91226 0.84650 1.02100 1.20976 0.94923 0.95455 0.98375 0.91988 1.21708 0.99661 1.00775 0.97401 1.20068 0.81575 0.97737 1.06407 1.26135 1.00953 0.99843 0.83379 1.74558 0.89935 1.22222 1.24590 1.85239 1.20141 1.65509 1.27245 1.29085 0.98286 0.93773 0.80948 1.19336 0.86602 0.93879 1.01670 1.19249 0.98024 0.95044 0.92859 1.21130 1.03285 0.94109 1.00711 1.21178 0.97359 0.95791 0.94857 1.21376 1.06241 1.01151 0.97233 1.19894 0.93840 0.93940 0.86401 1.83945 1.73033 1.25771 1.31150 1.21802 1.36997 0.82211 1.08000 0.88186 1.26562 0.95474 1.05575 0.94339 1.70185 1.36235 1.38897 1.10426 0.84623 0.78615 0.73844 0.79372 1.18530 1.19669 1.17813 1.20273 1.06899 0.93151 0.99728 1.71975 0.99242 1.20991 1.31044 0.92523 0.89238 0.93060 0.91449 0.90729 0.91648 0.93380 0.95232 0.86909 0.86453 0.85242 0.82563 0.82307 0.83463 0.86502 0.91882 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.42 -9.83 10.24 -148.98 -1.53 -11.35 16 3 C 0.07 1.32 5.32 71.98 0.38 1.70 16 4 C -0.08 -1.83 2.62 -10.79 -0.03 -1.85 16 5 H 0.06 1.68 8.14 -2.38 -0.02 1.67 16 6 C -0.14 -4.18 8.90 71.98 0.64 -3.54 16 7 C -0.02 -0.39 5.32 29.85 0.16 -0.24 16 8 C 0.17 4.69 6.67 138.46 0.92 5.62 16 9 N -0.40 -11.60 12.16 -60.33 -0.73 -12.33 16 10 O 0.08 2.05 11.31 74.84 0.85 2.89 16 11 C 0.20 5.30 7.75 88.38 0.68 5.99 16 12 C 0.02 0.50 5.97 29.10 0.17 0.67 16 13 C -0.05 -1.55 5.11 -19.88 -0.10 -1.66 16 14 C -0.17 -4.91 9.70 22.30 0.22 -4.69 16 15 C -0.07 -2.42 10.04 22.25 0.22 -2.20 16 16 C -0.24 -10.40 9.17 22.39 0.21 -10.19 16 17 C 0.11 5.45 6.65 22.58 0.15 5.60 16 18 O -0.23 -14.15 9.76 -22.76 -0.22 -14.37 16 19 C -0.41 -24.43 9.49 67.92 0.64 -23.78 16 20 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 21 C -0.02 -1.26 5.49 84.83 0.47 -0.80 16 22 N -0.92 -57.18 13.67 21.61 0.30 -56.89 16 23 Si 1.02 43.48 29.55 68.60 2.03 45.51 16 24 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 H -0.25 -10.16 7.11 99.48 0.71 -9.46 16 27 C -0.18 -7.58 9.65 22.39 0.22 -7.37 16 28 N -0.50 -15.14 10.87 -303.21 -3.30 -18.44 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.05 1.56 7.82 -2.38 -0.02 1.55 16 36 H 0.03 1.06 6.83 -2.39 -0.02 1.04 16 37 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.13 2.53 8.08 -2.39 -0.02 2.51 16 40 H 0.16 1.89 8.08 -2.39 -0.02 1.87 16 41 H 0.16 3.08 8.06 -2.91 -0.02 3.05 16 42 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 43 H 0.12 5.18 5.64 -2.91 -0.02 5.16 16 44 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 45 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -78.99 385.14 4.60 -74.39 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: 1.00 Total: 25.67 kcal Atomic # 6 Polarization: -41.29 SS G_CDS: 6.20 Total: -35.09 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -3.73 Total: -87.66 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.90 Total: -22.83 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -78.99 4.60 -74.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844885187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.156 kcal (2) G-P(sol) polarization free energy of solvation -78.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds